BAC Information

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BAC

Clone NameB6Ng01-286F07
Chromosome19 (Build37)
Map Location 31,604,359 - 31,740,813
singlet/doubletdoublet
Overlap genePrkg1
Upstream geneLOC668020, EG546723, Dkk1, LOC625995, Cstf2t, 8430431K14Rik
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286F07.bB6Ng01-286F07.g
ACCGA084556GA084557
length1,1821,098
definitionB6Ng01-286F07.b B6Ng01-286F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,604,359 - 31,605,546)(31,739,706 - 31,740,813)
sequence
gaattcttttccagtagatgtacaggaaggtgaaggaacacaggaatgga
cacacagaggcaagctgctcagatactcaggatgagatactgttgcagtg
agtcacaggaggaccaaacagcaggtcactttttatcttcctgtcactct
caggaaatgccaaaaagtaaaaataaaaagacagcaacaacagcttttcc
atgcactcggtcagcagcagctacctcaacaggaaactcttctaatggtt
acagactccaacggttcatcagaaatagtacaactgtgtaggaaagcaga
ggtggggctgccaacttcatccatcctaagagaagtacatcaccaagaaa
cgccaaagcaagagagaaaaaagttttattttgtttgttttagatagcaa
aatagctcctcgtttcttgtttcctctctaagtccaaccataaaagaatg
aagtacacagatcgtcacatataggacccaggggaaaagatcacctggct
agccacaagctttcatgtggtactgtgcaccagcaagaaaacagggtaag
gcaatattcaaaatagatccttccttcaaagagttaagactagctttaaa
agaactctccaaagttcactttgcaaatattaggaaacttgcatcatctt
gattatcctttaagaaagtactgctttataattggggaaccatagggccc
atagaatttaaaggatttttacaaaaaaaaaaaaaaagtaaaacttgcag
ttaacagaagtagcattgaagcccaggtcttctgagtcaatgtcttccta
taatactaaccactggacttgctgatagtgcttttcatttatttatttat
tttccttaaagcattgccacatctcctgctgtgcccttggttgcctagaa
aatttcattcaggcttcacattttctcttgggccgttagtcagaaaaaca
gtccggataaggctctgtcataatcaccgccgggcctcacagcacagcat
tacactttcaggaaatgccaaaagtaaaataaagagcacaatactttttc
ccatgcacaaagcagcagcagctactcaacagcagtggcagctctacaga
aagaagggctgcagaaccgaatgggaatggagatgaaacttagaagaagg
tcgttcgcctctcttcagctcatgaaatgtga
gaattcccacaggttaactgaagttctggatctttgcctgagaggaggaa
actgtcccagagggaagatgctgcaggatgcaattagtcacacaatgttg
cagacttctgctcaagatgacttttaagagaaataacagttaattcagaa
ctattatttaactgctatcttttgaaaatatttcctgtcctgtggacttt
ttacattgtactctgaagcgaattcaaagcttctggttgtaaggaataca
catggctccatctgtagagagaactacatcatagtctttgtggaagaagt
tttgttaatgtgctagtggctagtaggctttctctttccagctttcttag
ctcagatagaaaatgttggccatttgaggaaataaataggcaacgttttt
gttgttgttgttgttgtttaagagagatttgtgtccttggctaatttgag
atttcaggcagaagttttgtattgcaacttagttttaatgaattttctat
ctgtttcgtttaagtgttaaagggtgggtagatagaatatgagaattata
acacggagtgtgaaagaatagcaagtttaaaggttccctttctttctttc
tttctttttaagctataagtttggacaagctggtgaaggtttagttaact
attaggcacttatgtaagcattaggtaaatattttgggtattctaaataa
gtgttcccaagatgagagaccaattcttggactgaaagaatgccgccttc
ttgctagcagtttagcccacactgagcagttggttctggctggtgaagtg
gttgggttgagagctagtgtagtgggtgggacagtgcaattacagctcct
gtagttttcccatcctttgttgatcttacctcttccccaagttggcaaaa
ttttctcattaactcctgggctgttaggaaagtaacgttgaaaagtatgg
gttccttttctgaaagaatgttttggaactcgctgtgtttttttaagcct
cactccacttcaccaatccagcaatggaagaaggcagctctagggaccat
tcgcaattgatacctagccaaattggagactaaggagctgctgaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31604359_31605546
seq2: B6Ng01-286F07.b_48_1229

seq1  GAATTCTTTTCCAGTAGATGTACAGGAAGGTGAAGGAACACAGGAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGTAGATGTACAGGAAGGTGAAGGAACACAGGAATGGA  50

seq1  CACACAGAGGCAAGCTGCTCAGATACTCAGGATGAGATACTGTTGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGGCAAGCTGCTCAGATACTCAGGATGAGATACTGTTGCAGTG  100

seq1  AGTCACAGGAGGACCAAACAGCAGGTCACTTTTTATCTTCCTGTCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGAGGACCAAACAGCAGGTCACTTTTTATCTTCCTGTCACTCT  150

seq1  CAGGAAATGCCAAAAAGTAAAAATAAAAAGACAGCAACAACAGCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGCCAAAAAGTAAAAATAAAAAGACAGCAACAACAGCTTTTCC  200

seq1  ATGCACTCGGTCAGCAGCAGCTACCTCAACAGGAAACTCTTCTAATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCGGTCAGCAGCAGCTACCTCAACAGGAAACTCTTCTAATGGTT  250

seq1  ACAGACTCCAACGGTTCATCAGAAATAGTACAACTGTGTAGGAAAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCCAACGGTTCATCAGAAATAGTACAACTGTGTAGGAAAGCAGA  300

seq1  GGTGGGGCTGCCAACTTCATCCATCCTAAGAGAAGTACATCACCAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCTGCCAACTTCATCCATCCTAAGAGAAGTACATCACCAAGAAA  350

seq1  CGCCAAAGCAAGAGAGAAAAAAGTTTTATTTTGTTTGTTTTAGATAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAAGCAAGAGAGAAAAAAGTTTTATTTTGTTTGTTTTAGATAGCAA  400

seq1  AATAGCTCCTCGTTTCTTGTTTCCTCTCTAAGTCCAACCATAAAAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCCTCGTTTCTTGTTTCCTCTCTAAGTCCAACCATAAAAGAATG  450

seq1  AAGTACACAGATCGTCACATATAGGACCCAGGGGAAAAGATCACCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAGATCGTCACATATAGGACCCAGGGGAAAAGATCACCTGGCT  500

seq1  AGCCACAAGCTTTCATGTGGTACTGTGCACCAGCAAGAAAACAGGGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAAGCTTTCATGTGGTACTGTGCACCAGCAAGAAAACAGGGTAAG  550

seq1  GCAATATTCAAAATAGATCCTTCCTTCAAAGAGTTAAGACTAGCTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTCAAAATAGATCCTTCCTTCAAAGAGTTAAGACTAGCTTTAAA  600

seq1  AGAACTCTCCAAAGTTCACTTTGCAAATATTAGGAAACTTGCATCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCCAAAGTTCACTTTGCAAATATTAGGAAACTTGCATCATCTT  650

seq1  GATTATCCTTTAAGAAAGTACTGCTTTATAATTGGGGAACCATAGGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCCTTTAAGAAAGTACTGCTTTATAATTGGGGAACCATAGGGCCC  700

seq1  ATAGAATTTAAAGGATTTTTACAAAAAAAAAAAAAAAGTAAAACTTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTAAAGGATTTTTACAAAAAAAAAAAAAAAGTAAAACTTGCAG  750

seq1  TTAACAGAAGTAGCATTGAAGCCCAGGTCTTCTGAGTCAATGTCTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAAGTAGCATTGAAGCCCAGGTCTTCTGAGTCAATGTCTTCCTA  800

seq1  TAATACTAACCACTGGACTTGCTGATAGTGCTTTTCATTTATTTATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAACCACTGGACTTGCTGATAGTGCTTTTCATTTATTTATTTAT  850

seq1  TTTCCTTAAAGCATTGCCACATCTCCTGCTGTGCCCTTGGTTGCCTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAAGCATTGCCACATCTCCTGCTGTGCCCTTGGTTGCCTAGAA  900

seq1  AATTTCATTCAGGCTTCACATTTTCTCTT-GGCCGTTAGTCAG-AAAACA  948
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AATTTCATTCAGGCTTCACATTTTCTCTTGGGCCGTTAGTCAGAAAAACA  950

seq1  GTCCGGATAAGGCTCTGTCATAAATCACCGCC-GGCCTCACAGCACAGCA  997
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GTCCGGATAAGGCTCTGTCAT-AATCACCGCCGGGCCTCACAGCACAGCA  999

seq1  TTACACTTTCAGGAAATGCCAAAAAGTAAAAATAAAAGAAGCAACAATAC  1047
      |||||||||||||||||||| |||||| ||||||||   ||| |||||||
seq2  TTACACTTTCAGGAAATGCC-AAAAGT-AAAATAAA--GAGC-ACAATAC  1044

seq1  TTTTT-CCATGCACAAAGCCAGCAGCAGCTACCTCAACAGCAGTGGCAGC  1096
      ||||| |||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTTTCCCATGCACAAAG-CAGCAGCAGCTA-CTCAACAGCAGTGGCAGC  1092

seq1  TTCTACAGAAAGAAGGGCTGCAGAACCGGATGGG-ATGGAGATGAAAACC  1145
       ||||||||||||||||||||||||||| ||||| ||||||||||||  |
seq2  -TCTACAGAAAGAAGGGCTGCAGAACCGAATGGGAATGGAGATGAAA--C  1139

seq1  TAAGAAGGAAGGTTCGTTCGCCTCTC-TCAGCTCATG-AATGTGA  1188
      | |||| ||||| ||||||||||||| |||||||||| |||||||
seq2  TTAGAA-GAAGG-TCGTTCGCCTCTCTTCAGCTCATGAAATGTGA  1182

seq1: chr19_31739706_31740813
seq2: B6Ng01-286F07.g_70_1167 (reverse)

seq1  GCCTCTCAGCAGCTCCCTGGTCCCTCCCATTTGTGCTA-GTATCAATTGC  49
      |||| ||||||||||| | ||  |||| ||||| |||| |||||||||||
seq2  GCCT-TCAGCAGCTCCTTAGT--CTCCAATTTG-GCTAGGTATCAATTGC  46

seq1  GGAATGGTTCCCTAGAGGCCTGGCTTCTTCCATTTGCTGGATTTGGTGAA  99
       |||||| |||||||||  ||| ||||||||| |||||||| ||||||||
seq2  -GAATGG-TCCCTAGAG--CTGCCTTCTTCCA-TTGCTGGA-TTGGTGAA  90

seq1  GTGG-GTGGGGGCTTAAAAAACACAGCGGAGTTCCAAAACATTCTTTCAG  148
      |||| ||| ||  | |||||||||||| ||||||||||||||||||||||
seq2  GTGGAGTGAGGCTTAAAAAAACACAGC-GAGTTCCAAAACATTCTTTCAG  139

seq1  AAAGGGAA-CCATACCTTTTCAACGTTACTTTCCTAACAGCCCAGGAGTT  197
      ||| |||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAGGAACCCATA-CTTTTCAACGTTACTTTCCTAACAGCCCAGGAGTT  188

seq1  AATGAGAAAATTTTGCCAACTTTGGGGAAGAGGTAAGATCAACAAAGGAT  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGAGAAAATTTTGCCAAC-TTGGGGAAGAGGTAAGATCAACAAAGGAT  237

seq1  GGGAAAACTACAGGAGCTGTAATTGCACTGTCCCACCCACTACACTAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTACAGGAGCTGTAATTGCACTGTCCCACCCACTACACTAGCT  287

seq1  CTCAACCCAACCACTTCACCAGCCAGAACCAACTGCTCAGTGTGGGCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCAACCACTTCACCAGCCAGAACCAACTGCTCAGTGTGGGCTAA  337

seq1  ACTGCTAGCAAGAAGGCGGCATTCTTTCAGTCCAAGAATTGGTCTCTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGCAAGAAGGCGGCATTCTTTCAGTCCAAGAATTGGTCTCTCAT  387

seq1  CTTGGGAACACTTATTTAGAATACCCAAAATATTTACCTAATGCTTACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAACACTTATTTAGAATACCCAAAATATTTACCTAATGCTTACAT  437

seq1  AAGTGCCTAATAGTTAACTAAACCTTCACCAGCTTGTCCAAACTTATAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTAATAGTTAACTAAACCTTCACCAGCTTGTCCAAACTTATAGC  487

seq1  TTAAAAAGAAAGAAAGAAAGAAAGGGAACCTTTAAACTTGCTATTCTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAGAAAGAAAGAAAGGGAACCTTTAAACTTGCTATTCTTTC  537

seq1  ACACTCCGTGTTATAATTCTCATATTCTATCTACCCACCCTTTAACACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCGTGTTATAATTCTCATATTCTATCTACCCACCCTTTAACACTT  587

seq1  AAACGAAACAGATAGAAAATTCATTAAAACTAAGTTGCAATACAAAACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAACAGATAGAAAATTCATTAAAACTAAGTTGCAATACAAAACTT  637

seq1  CTGCCTGAAATCTCAAATTAGCCAAGGACACAAATCTCTCTTAAACAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAAATCTCAAATTAGCCAAGGACACAAATCTCTCTTAAACAACA  687

seq1  ACAACAACAACAAAAACGTTGCCTATTTATTTCCTCAAATGGCCAACATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAAAAACGTTGCCTATTTATTTCCTCAAATGGCCAACATT  737

seq1  TTCTATCTGAGCTAAGAAAGCTGGAAAGAGAAAGCCTACTAGCCACTAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTGAGCTAAGAAAGCTGGAAAGAGAAAGCCTACTAGCCACTAGC  787

seq1  ACATTAACAAAACTTCTTCCACAAAGACTATGATGTAGTTCTCTCTACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACAAAACTTCTTCCACAAAGACTATGATGTAGTTCTCTCTACAG  837

seq1  ATGGAGCCATGTGTATTCCTTACAACCAGAAGCTTTGAATTCGCTTCAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCATGTGTATTCCTTACAACCAGAAGCTTTGAATTCGCTTCAGA  887

seq1  GTACAATGTAAAAAGTCCACAGGACAGGAAATATTTTCAAAAGATAGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGTAAAAAGTCCACAGGACAGGAAATATTTTCAAAAGATAGCAG  937

seq1  TTAAATAATAGTTCTGAATTAACTGTTATTTCTCTTAAAAGTCATCTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATAGTTCTGAATTAACTGTTATTTCTCTTAAAAGTCATCTTGA  987

seq1  GCAGAAGTCTGCAACATTGTGTGACTAATTGCATCCTGCAGCATCTTCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTCTGCAACATTGTGTGACTAATTGCATCCTGCAGCATCTTCCC  1037

seq1  TCTGGGACAGTTTCCTCCTCTCAGGCAAAGATCCAGAACTTCAGTTAACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACAGTTTCCTCCTCTCAGGCAAAGATCCAGAACTTCAGTTAACC  1087

seq1  TGTGGGAATTC  1108
      |||||||||||
seq2  TGTGGGAATTC  1098