BAC Information

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BAC

Clone NameB6Ng01-286H19
Chromosome19 (Build37)
Map Location 4,710,451 - 4,711,394
singlet/doubletsinglet
Overlap geneSpnb3
Upstream gene1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960
Downstream geneRbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286H19.bB6Ng01-286H19.g
ACCGA084671GA084672
length1,168948
definitionB6Ng01-286H19.b B6Ng01-286H19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatggctagctttctttctttctttcattctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctacaaaaatgtagtgatcttatactaaacttaacaacacacct
tgagtctgtagaacaaaaagaagtaagcatacccaaaaagagtagatggc
aagaaataataaaactgagaactgaaattattaaaatagaaacaaggaga
acactgcaaagaatcaatgaaaccaagagttggttctttcagaaaatcaa
caagataaacaaacctttatcaaaactaactaaaagatggagagagaata
ttcaaataaacaacatcaggaccaagaaaggggacataacaacagacact
gcataaatccaaagaatcattagatcatattttaaaaacctgtaatccat
aaaattagaaaatctaaaataaatgaataatcttctaaattggtaccatt
tgccaaagttgaatcaatatcaggtaaatgatttaaatagcctttaagga
aatagaagaaatcattgaaaaatcttcaaaccacaaaagcccagggacaa
atgattttagcacagaattttaccacacattcaaaaaaattaatgtcaat
actccttaaattattccagaaaatagaaacagcagaaacattacctaaat
tattttgctaggtcacagttaccctggtaccaaagccacataaagactca
actaagaaagagaattacacactaatttacctttgaacatagatttaaaa
ctacttaataaaattcttgcactctgaatccaagaatacatcaaaaagat
agctaccatgacccaggatgttccatttcagagatgcagggatgggttca
atatataaaaaacagtaaatgtaatccaccctataaacaaactgaaagaa
atacacacacacacacacacacacacactacacacacacacacacaagtt
ggtgcagaaaaagaaccttgaaaaaatctaacatttcttcatgataagtc
tagagaatacaagggaacatgcccacacattatgaagaacattacagcct
gctagagactacatccattgaatgaagtacttagcaattcactaatcaga
acaggacttggggtggtc
gaattccggcctagtcactgtcttaagggggttgggggcagggatggaca
tttctagtcctagcacggccgggtttcttcctggtttattagcagctgag
tggtctacggtttaatggcattaaccaaggtgagctgctatctgcctagg
agaggaaggaaatatgcccaaatcagagcaaatgcacagagtgggtgcta
gcagtgggtgctaaaagtgcgttatgtcatgtgacactcccacccccact
ccagctctgaaagtactgttcctccagattggagagctaactaagctcag
ggaggtaccagaagggagaaaaaaaaaaaaaaaaaaaaaaaaagatggat
ttttgtagcaagcctttgggttctatactcctgagaagagctaggccctt
tcatacactaggaatgcctgagatggacaagaaaggaccacaaaaagaat
gttctttcagtgaattattgagcttagggtattaaaatagctttatcgtt
aactaaattttaccattttgcttctttctgggaaggtatgcatatctaaa
acagctacatgtaatcacactacttttcaggtatgattttcacagagtaa
gatcactgtgttcaatgtagttttaaaaaatctgtaaagtaaaacaaaac
cttgctaccaccaccaaacagttgcattgttttatccatctggccctggt
tttcctcgtgtataaagtgggttggggagggactggggagttttgttaaa
ctgctaatcagatctgagattctatcattaaacgggaatttagccctctg
taaactgtatttcaaggtgttttatgatttttaaaaagtcacttatgtag
aatggtgctacgcctttaatcccagagttcagaaaagaaggcaaagaaca
ggcaatcctgagttcaaagccagcctgctctacatgtgaattccaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4710451_4711394
seq2: B6Ng01-286H19.g_70_1017 (reverse)

seq1  GCCTGGAATTCCCATGTAGAGCAGGCTGGCTTTGAACTCAGGATTTGCCT  50
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GCCTGGAATTCACATGTAGAGCAGGCTGGCTTTGAACTCAGGA-TTGCCT  49

seq1  G-TCTCTGCCT--CTTTCTGAACTCTGGGATTAAAGGCGTAGCA-CATTC  96
      | ||| |||||   |||||||||||||||||||||||||||||| |||||
seq2  GTTCTTTGCCTTCTTTTCTGAACTCTGGGATTAAAGGCGTAGCACCATTC  99

seq1  TACATAAGTGACTTTTTAAAAATCAT-AAACACCCTGAAATACAGTTTAC  145
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TACATAAGTGACTTTTTAAAAATCATAAAACACCTTGAAATACAGTTTAC  149

seq1  AGAAGGCTAAATTCCCGTTTAATGATAGAATCTCAGATCTGATTAGCAGT  195
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTAAATTCCCGTTTAATGATAGAATCTCAGATCTGATTAGCAGT  199

seq1  TTAACAAAACTCCCCAGTCCCTCCCCAACCCACTTTATACACGAGGAAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAACTCCCCAGTCCCTCCCCAACCCACTTTATACACGAGGAAAA  249

seq1  CCAGGGCCAGATGGATAAAACAATGCAACTGTTTGGTGGTGGTAGCAAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCAGATGGATAAAACAATGCAACTGTTTGGTGGTGGTAGCAAGG  299

seq1  TTTTGTTTTACTTTACAGATTTTTTAAAACTACATTGAACACAGTGATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTACTTTACAGATTTTTTAAAACTACATTGAACACAGTGATCT  349

seq1  TACTCTGTGAAAATCATACCTGAAAAGTAGTGTGATTACATGTAGCTGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTGAAAATCATACCTGAAAAGTAGTGTGATTACATGTAGCTGTT  399

seq1  TTAGATATGCATACCTTCCCAGAAAGAAGCAAAATGGTAAAATTTAGTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATGCATACCTTCCCAGAAAGAAGCAAAATGGTAAAATTTAGTTA  449

seq1  ACGATAAAGCTATTTTAATACCCTAAGCTCAATAATTCACTGAAAGAACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAAAGCTATTTTAATACCCTAAGCTCAATAATTCACTGAAAGAACA  499

seq1  TTCTTTTTGTGGTCCTTTCTTGTCCATCTCAGGCATTCCTAGTGTATGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTGGTCCTTTCTTGTCCATCTCAGGCATTCCTAGTGTATGAA  549

seq1  AGGGCCTAGCTCTTCTCAGGAGTATAGAACCCAAAGGCTTGCTACAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAGCTCTTCTCAGGAGTATAGAACCCAAAGGCTTGCTACAAAAA  599

seq1  TCCATCTTTTTTTTTTTTTTTTTTTTTTTTTCTCCCTTCTGGTACCTCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTTTTTTTTTTTTTTTTTTTTTTTCTCCCTTCTGGTACCTCCC  649

seq1  TGAGCTTAGTTAGCTCTCCAATCTGGAGGAACAGTACTTTCAGAGCTGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAGTTAGCTCTCCAATCTGGAGGAACAGTACTTTCAGAGCTGGA  699

seq1  GTGGGGGTGGGAGTGTCACATGACATAACGCACTTTTAGCACCCACTGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTGGGAGTGTCACATGACATAACGCACTTTTAGCACCCACTGCT  749

seq1  AGCACCCACTCTGTGCATTTGCTCTGATTTGGGCATATTTCCTTCCTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACTCTGTGCATTTGCTCTGATTTGGGCATATTTCCTTCCTCTC  799

seq1  CTAGGCAGATAGCAGCTCACCTTGGTTAATGCCATTAAACCGTAGACCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGATAGCAGCTCACCTTGGTTAATGCCATTAAACCGTAGACCAC  849

seq1  TCAGCTGCTAATAAACCAGGAAGAAACCCGGCCGTGCTAGGACTAGAAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTAATAAACCAGGAAGAAACCCGGCCGTGCTAGGACTAGAAAT  899

seq1  GTCCATCCCTGCCCCCAACCCCCTTAAGACAGTGACTAGGCCGGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCCTGCCCCCAACCCCCTTAAGACAGTGACTAGGCCGGAATTC  948