BAC Information

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BAC

Clone NameB6Ng01-286N02
Chromosome19 (Build37)
Map Location 7,274,177 - 7,416,209
singlet/doubletdoublet
Overlap geneOtub1, Cox8a, Nat11, Rcor2, Mark2
Upstream geneEhd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
Downstream geneAI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286N02.bB6Ng01-286N02.g
ACCGA084915GA084916
length2811,114
definitionB6Ng01-286N02.b B6Ng01-286N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,415,929 - 7,416,209)(7,274,177 - 7,275,285)
sequence
acccatcgtctgggccgagaggaaaaggctcttccccctcccgttcctag
ttgtttcggatgtttccggctcttgccggcggaaagagccgagggctggc
ggtggtggcggccatgttgggagcagcaggtccggcggcggctgcctgtg
tgtcgggcgcggagcagtgcggctgagggcaggggaggagcgaggcaggc
ggccggctgcggcggttgagagtaggcggagcggcgcggccgggccgaaa
ggcggcacaacccagccgggggtcggggggg
gaattcagtgaagccctgggataccaggtcctctttactcttggcagaca
cggctttgaacctgcaggtgggaaggaatgggaagccaatatgggctcct
cggctagcagagcaaggccctagccagcccagtcctgcctagacaaggac
acccaccaagctcaaaaagaagtccccaagcaacccaaatgatgggtagc
ctaaggccctgacttcctcatgagaggtccagagccccagtgcctgtcgt
cctcaccgctgcagttccttgctgtcatctagcagtgcctccaggtggga
gaagccaaacgctcggtagaagcagttgccatcaggccgggtcttccgta
tgtatgagtactttttgtggaggtcctgcagagatgcagctcagcttaac
attcaccagcccaagaaatggctagaacagcaggtggcaactgagctccc
acctcctggcttctgaatggggacaccaagtaacccactggcactcttgg
aagctatgcacttatgtgtcaatggttgtacggtcgccagccgctaagcc
atgtgggtaccactggctagagctttgtttaaaaacaggtgactaaatct
gtccttgactaatacagctttttaaggtctttaatgcaagcaagacaaac
gggaacaggacaggccatactaccagctgccctgcccagtagggctctag
ccacagagaagctctccctacagtctggggctaaactggctctccaatac
actttcacctttctaaccatgctgcccacaacagggaccacctccttcag
cccttcctgcttcctcgagatgaagcagtcccatgacacagactcctagt
actgctttaagcaggtcttaccccatctggacaaccctggccctggtcac
cccttgtgcctgctccttcctcagatgactatccctcagacaactgtcag
taaagagagtcctttacactgaaaatatggcctgacatttcatctgccac
tatgctgccccaatattcactaccagctctgtcccctcagatcaaaggac
accttcctaattaaggtttgactccagagtcatataagatccaggtaagt
cctcccagtacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7415929_7416209
seq2: B6Ng01-286N02.b_53_333 (reverse)

seq1  CCCCCCCGACCCCCGGCTGGGTTGTGCCGCCTTTCGGCCCGGCCGCGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCGACCCCCGGCTGGGTTGTGCCGCCTTTCGGCCCGGCCGCGCCG  50

seq1  CTCCGCCTACTCTCAACCGCCGCAGCCGGCCGCCTGCCTCGCTCCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTACTCTCAACCGCCGCAGCCGGCCGCCTGCCTCGCTCCTCCCC  100

seq1  TGCCCTCAGCCGCACTGCTCCGCGCCCGACACACAGGCAGCCGCCGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGCCGCACTGCTCCGCGCCCGACACACAGGCAGCCGCCGCCGG  150

seq1  ACCTGCTGCTCCCAACATGGCCGCCACCACCGCCAGCCCTCGGCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGCTCCCAACATGGCCGCCACCACCGCCAGCCCTCGGCTCTTTC  200

seq1  CGCCGGCAAGAGCCGGAAACATCCGAAACAACTAGGAACGGGAGGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGCAAGAGCCGGAAACATCCGAAACAACTAGGAACGGGAGGGGGAA  250

seq1  GAGCCTTTTCCTCTCGGCCCAGACGATGGGT  281
      |||||||||||||||||||||||||||||||
seq2  GAGCCTTTTCCTCTCGGCCCAGACGATGGGT  281

seq1: chr19_7274177_7275285
seq2: B6Ng01-286N02.g_68_1181

seq1  GAATTCAGTGAAGCCCTGGGATACCAGGTCCTCTTTACTCTTGGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAGCCCTGGGATACCAGGTCCTCTTTACTCTTGGCAGACA  50

seq1  CGGCTTTGAACCTGCAGGTGGGAAGGAATGGGAAGCCAATATGGGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTGAACCTGCAGGTGGGAAGGAATGGGAAGCCAATATGGGCTCCT  100

seq1  CGGCTAGCAGAGCAAGGCCCTAGCCAGCCCAGTCCTGCCTAGACAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAGCAGAGCAAGGCCCTAGCCAGCCCAGTCCTGCCTAGACAAGGAC  150

seq1  ACCCACCAAGCTCAAAAAGAAGTCCCCAAGCAACCCAAATGATGGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAAGCTCAAAAAGAAGTCCCCAAGCAACCCAAATGATGGGTAGC  200

seq1  CTAAGGCCCTGACTTCCTCATGAGAGGTCCAGAGCCCCAGTGCCTGTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCCTGACTTCCTCATGAGAGGTCCAGAGCCCCAGTGCCTGTCGT  250

seq1  CCTCACCGCTGCAGTTCCTTGCTGTCATCTAGCAGTGCCTCCAGGTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCGCTGCAGTTCCTTGCTGTCATCTAGCAGTGCCTCCAGGTGGGA  300

seq1  GAAGCCAAACGCTCGGTAGAAGCAGTTGCCATCAGGCCGGGTCTTCCGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAACGCTCGGTAGAAGCAGTTGCCATCAGGCCGGGTCTTCCGTA  350

seq1  TGTATGAGTACTTTTTGTGGAGGTCCTGCAGAGATGCAGCTCAGCTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTACTTTTTGTGGAGGTCCTGCAGAGATGCAGCTCAGCTTAAC  400

seq1  ATTCACCAGCCCAAGAAATGGCTAGAACAGCAGGTGGCAACTGAGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGCCCAAGAAATGGCTAGAACAGCAGGTGGCAACTGAGCTCCC  450

seq1  ACCTCCTGGCTTCTGAATGGGGACACCAAGTAACCCACTGGCACTCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGGCTTCTGAATGGGGACACCAAGTAACCCACTGGCACTCTTGG  500

seq1  AAGCTATGCACTTATGTGTCAATGGTTGTACGGTCGCCAGCCGCTAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGCACTTATGTGTCAATGGTTGTACGGTCGCCAGCCGCTAAGCC  550

seq1  ATGTGGGTACCACTGGCTAGAGCTTTGTTTAAAAACAGGTGACTAAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTACCACTGGCTAGAGCTTTGTTTAAAAACAGGTGACTAAATCT  600

seq1  GTCCTTGACTAATACAGCTTTTTAAGGTCTTTAATGCAAGCAAGACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGACTAATACAGCTTTTTAAGGTCTTTAATGCAAGCAAGACAAAC  650

seq1  GGGAACAGGACAGGCCATACTACCAGCTGCCCTGCCCAGTAGGGCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGGACAGGCCATACTACCAGCTGCCCTGCCCAGTAGGGCTCTAG  700

seq1  CCACAGAGAAGCTCTCCCTACAGTCTGGGGCTAAACTGGCTCTCCAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAAGCTCTCCCTACAGTCTGGGGCTAAACTGGCTCTCCAATAC  750

seq1  ACTTTCACC-TTCTAACCATGCTGCCCACAACAGGGACCACCTCCTTCAG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACCTTTCTAACCATGCTGCCCACAACAGGGACCACCTCCTTCAG  800

seq1  CCCTTCCTGCTTCCTCGAGATGAAGCAGTCCCATGACACAGACTCCTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGCTTCCTCGAGATGAAGCAGTCCCATGACACAGACTCCTAGT  850

seq1  ACTGC-TTAAGCAGGTCTTA-CCCATCTGGACAACCCTGGCCCTGGTCAC  897
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTGCTTTAAGCAGGTCTTACCCCATCTGGACAACCCTGGCCCTGGTCAC  900

seq1  CCCTTGTGCCTGCTCCTTCCTCAGATGACTAT-CCTCAGACAACTGTCAG  946
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTTGTGCCTGCTCCTTCCTCAGATGACTATCCCTCAGACAACTGTCAG  950

seq1  TAAAGAGAGTCCTTTTACACTGAAAATATGGCCCTGACATTTCATCTGCC  996
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TAAAGAGAGTCC-TTTACACTGAAAATATGG-CCTGACATTTCATCTGCC  998

seq1  ACTATGCTGCCCCAATATTCACTACCAGCTCCTGT-CCCTCAGATTCAAG  1045
      |||||||||||||||||||||||||||||| |||| |||||||||  |||
seq2  ACTATGCTGCCCCAATATTCACTACCAGCT-CTGTCCCCTCAGATCAAAG  1047

seq1  GACACCTTCCTA--TCAGTTTTGACTCCAGAGTCATATAAGATCCAGGT-  1092
      ||||||||||||  | || |||||||||||||||||||||||||||||| 
seq2  GACACCTTCCTAATTAAGGTTTGACTCCAGAGTCATATAAGATCCAGGTA  1097

seq1  AGGCCTCCCAGTACAGA  1109
      || ||||||||||||||
seq2  AGTCCTCCCAGTACAGA  1114