BAC Information

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BAC

Clone NameB6Ng01-287C23
Chromosome19 (Build37)
Map Location 34,143,602 - 34,303,143
singlet/doubletdoublet
Overlap geneLipn, Ankrd22, Stambpl1
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462
Downstream geneActa2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287C23.bB6Ng01-287C23.g
ACCGA085177GA085178
length9991,152
definitionB6Ng01-287C23.b B6Ng01-287C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,302,144 - 34,303,143)(34,143,602 - 34,144,791)
sequence
gaattcaaacccgctgaagactcagtgacccaaaggaggaaatggccctt
tgccttcatgtggaggatgtccagaaacttacacaaaactggaccagaag
gtggaaaatatatgacccattgaaaatataattcagaaactgtagtctcc
cctcccccagcctgaaacctgcttgctcaggggtggagcatgccggctca
atcattctgccatgcccactgctggaacctgccgctttgctgttcgtagc
cgtgcacgtggtcaccctgctattggaccccaagattaattggagggaat
cgggccccttcccctgctttataactgcgtgtggaacagtaaagttagct
ttgatcagaatgcctgtcttagctgcatttctttctctcgctgcctagcc
cctcttctcttccaggtttccaaaatgcctttccaggctagaacccaggt
tgtgatctactggccagacacaacaagaaactataaagccgttagagcat
tttggtcatagactgtagtaggcaatcctcagttccttatttatttttca
acttcctgctaacagttgatttttcccaggtaggatgaaggcagtcaccc
attctctagatttccaagttaatctgtcaagctattaccttagaaattaa
ataacccgtaaatccttcttctttgttcttgatggaatcactaaaagtgg
tttttaaaaatattttattcgtttcatttgaatgttttcagaataaccac
ctccacctgaactactgtaatcataaataaaataaaaaaatacagaaaaa
cacgtatttcatgtatttggaatttttaaaagtcaaaggctttgccacac
acacactggcatgcacttgtagtgctgaagattctggagagccaggagga
ccaggatttaacttcatccttccccagatacacggtgtttccagtctggg
ctacatgaaagcctttgtccaaacaagcaaaagggggggggggggggcg
gaattctattggcatggaactttaccatctctaaagcctagaggagagtc
aaaagacaagtagcaaggaaatttaactttgtcagaaaaatcaacaccaa
atacgcaccccaatatctcagtagataccttccagcattcatttatttta
tactgacttatgtaagaaatttaattttacaactacctgcagctatagat
tttgtataatctacccccattaacttgttcatcactttgtctagtttttc
ttctggtgtctcctgaaaggaggaattacaaataactctatgtcctctac
agagtgaaataatcatgtacaacggctaccccagtgaagagtatgacgtc
accaccgcagatgggtacattctcgccatcaacagaattccccatgggag
agcacagactgggcagacaggtacaggagatgtgtcttttggggagaaag
atacatgactaaaatttaatgctagctattcattggaagggagacaacgt
tatccaaattggcttcagttactgcagtggtcttttaatggctagtgaga
aagttcattcttttccccccaacttctctaaagactcaaaggacaagaca
gatgctagaaggagaaatcaaacatgcaaaagtataaaaattatactcta
aaagggaaagctaactgcacccattaaaagattgtttaaggcagctaatt
aactatgctgagggtgaaagaagtgtaaacaaaagatttgcaaaggatca
ggggtagcccattcattagtccctgcataccaggttggtcctgcagcctc
tttcctaccaagcatattcagggcagccaagaccaccagaatcacagcgt
gctacattctgcccttccaataagaaacatgattcaagggctcccaaata
aaactcagagtggtgtgtggacaaaatatagctgttcaagttagatttaa
tatcagtaccacagacacatgtaatgatatgaataatatatctagagatg
atctacaaaaataaagcactgtcccttcatttcaatagaagagcatactg
catactgatctgctggtttggttggattattgattgacctaagctttatc
tataaatcaggcacacttgagaaagctatgcagagagaatttagaaataa
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34302144_34303143
seq2: B6Ng01-287C23.b_42_1040 (reverse)

seq1  CG-CCCCCCCCCCCCCCTTTTGCTTGTTTGGACAAAGGCTTTCATGTAGC  49
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCCCCCCCCCCCTTTTGCTTGTTTGGACAAAGGCTTTCATGTAGC  50

seq1  CCAGACTGGAAAACACCGTGTATCTGGGGAAGGATGAAGTTAAATCCCTG  99
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CCAGACTGG-AAACACCGTGTATCTGGGGAAGGATGAAGTTAAAT-CCTG  98

seq1  GTCCTCCTGGCTCTCCAGAATCTTCAGCACTACAAGTGCATGCCAGTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTGGCTCTCCAGAATCTTCAGCACTACAAGTGCATGCCAGTGTG  148

seq1  TGTGTGGCAAAGCCTTTGACTTTTAAAAATTCCAAATACATGAAATACGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCAAAGCCTTTGACTTTTAAAAATTCCAAATACATGAAATACGT  198

seq1  GTTTTTCTGTATTTTTTTATTTTATTTATGATTACAGTAGTTCAGGTGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGTATTTTTTTATTTTATTTATGATTACAGTAGTTCAGGTGGA  248

seq1  GGTGGTTATTCTGAAAACATTCAAATGAAACGAATAAAATATTTTTAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTATTCTGAAAACATTCAAATGAAACGAATAAAATATTTTTAAAA  298

seq1  ACCACTTTTAGTGATTCCATCAAGAACAAAGAAGAAGGATTTACGGGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTTAGTGATTCCATCAAGAACAAAGAAGAAGGATTTACGGGTTA  348

seq1  TTTAATTTCTAAGGTAATAGCTTGACAGATTAACTTGGAAATCTAGAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTAAGGTAATAGCTTGACAGATTAACTTGGAAATCTAGAGAA  398

seq1  TGGGTGACTGCCTTCATCCTACCTGGGAAAAATCAACTGTTAGCAGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACTGCCTTCATCCTACCTGGGAAAAATCAACTGTTAGCAGGAAG  448

seq1  TTGAAAAATAAATAAGGAACTGAGGATTGCCTACTACAGTCTATGACCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATAAATAAGGAACTGAGGATTGCCTACTACAGTCTATGACCAA  498

seq1  AATGCTCTAACGGCTTTATAGTTTCTTGTTGTGTCTGGCCAGTAGATCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTAACGGCTTTATAGTTTCTTGTTGTGTCTGGCCAGTAGATCAC  548

seq1  AACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAG  598

seq1  GGGCTAGGCAGCGAGAGAAAGAAATGCAGCTAAGACAGGCATTCTGATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGCAGCGAGAGAAAGAAATGCAGCTAAGACAGGCATTCTGATCA  648

seq1  AAGCTAACTTTACTGTTCCACACGCAGTTATAAAGCAGGGGAAGGGGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACTTTACTGTTCCACACGCAGTTATAAAGCAGGGGAAGGGGCCC  698

seq1  GATTCCCTCCAATTAATCTTGGGGTCCAATAGCAGGGTGACCACGTGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCCAATTAATCTTGGGGTCCAATAGCAGGGTGACCACGTGCAC  748

seq1  GGCTACGAACAGCAAAGCGGCAGGTTCCAGCAGTGGGCATGGCAGAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACGAACAGCAAAGCGGCAGGTTCCAGCAGTGGGCATGGCAGAATGA  798

seq1  TTGAGCCGGCATGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCGGCATGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAG  848

seq1  GGGAGACTACAGTTTCTGAATTATATTTTCAATGGGTCATATATTTTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTACAGTTTCTGAATTATATTTTCAATGGGTCATATATTTTCCA  898

seq1  CCTTCTGGTCCAGTTTTGTGTAAGTTTCTGGACATCCTCCACATGAAGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGTCCAGTTTTGTGTAAGTTTCTGGACATCCTCCACATGAAGGC  948

seq1  AAAGGGCCATTTCCTCCTTTGGGTCACTGAGTCTTCAGCGGGTTTGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCATTTCCTCCTTTGGGTCACTGAGTCTTCAGCGGGTTTGAATT  998

seq1  C  1000
      |
seq2  C  999

seq1: chr19_34143602_34144791
seq2: B6Ng01-287C23.g_65_1216

seq1  GAATTCTATTGGCATGGAACTTTACCATCTCTAAAGCCTAGAGGAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGCATGGAACTTTACCATCTCTAAAGCCTAGAGGAGAGTC  50

seq1  AAAAGACAAGTAGCAAGGAAATTTAACTTTGTCAGAAAAATCAACACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAGTAGCAAGGAAATTTAACTTTGTCAGAAAAATCAACACCAA  100

seq1  ATACGCACCCCAATATCTCAGTAGATACCTTCCAGCATTCATTTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCACCCCAATATCTCAGTAGATACCTTCCAGCATTCATTTATTTTA  150

seq1  TACTGACTTATGTAAGAAATTTAATTTTACAACTACCTGCAGCTATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTTATGTAAGAAATTTAATTTTACAACTACCTGCAGCTATAGAT  200

seq1  TTTGTATAATCTACCCCCATTAACTTGTTCATCACTTTGTCTAGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAATCTACCCCCATTAACTTGTTCATCACTTTGTCTAGTTTTTC  250

seq1  TTCTGGTGTCTCCTGAAAGGAGGAATTACAAATAACTCTATGTCCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGTCTCCTGAAAGGAGGAATTACAAATAACTCTATGTCCTCTAC  300

seq1  AGAGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAATAATCATGTACAACGGCTACCCCAGTGAAGAGTATGACGTC  350

seq1  ACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAG  400

seq1  AGCACAGACTGGGCAGACAGGTACAGGAGATGTGTCTTTTGGGGAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGACTGGGCAGACAGGTACAGGAGATGTGTCTTTTGGGGAGAAAG  450

seq1  ATACATGACTAAAATTTAATGCTAGCTATTCATTGGAAGGGAGACAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGACTAAAATTTAATGCTAGCTATTCATTGGAAGGGAGACAACGT  500

seq1  TATCCAAATTGGCTTCAGTTACTGCAGTGGTCTTTTAATGGCTAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAATTGGCTTCAGTTACTGCAGTGGTCTTTTAATGGCTAGTGAGA  550

seq1  AAGTTCATTCTTTTCCCCCCAACTTCTCTAAAGACTCAAAGGACAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATTCTTTTCCCCCCAACTTCTCTAAAGACTCAAAGGACAAGACA  600

seq1  GATGCTAGAAGGAGAAATCAAACATGCAAAAGTATAAAAATTATACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGAAGGAGAAATCAAACATGCAAAAGTATAAAAATTATACTCTA  650

seq1  AAAGGGAAAGCTAACTGCACCCATTAAAAGATTGTTTAAGGCAGCTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAGCTAACTGCACCCATTAAAAGATTGTTTAAGGCAGCTAATT  700

seq1  AACTATGCTGAGGGTGAAAGAAGTGTAAACAAAAGATTTGCAAAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCTGAGGGTGAAAGAAGTGTAAACAAAAGATTTGCAAAGGATCA  750

seq1  GGGGTAGCCCATTCATTAGTCCCTGCATACCAGGTTGGTCCTGCAGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGCCCATTCATTAGTCCCTGCATACCAGGTTGGTCCTGCAGCCTC  800

seq1  TTTCCTACCAAGCATATTCAGGGGCAGCCAAGACCACCAGAATCACAGCG  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCCTACCAAGCATATTCA-GGGCAGCCAAGACCACCAGAATCACAGCG  849

seq1  TGCTACATTCTGCCCTTCCAATAAAGAAACATGATTCAAGGGCTCCCAAA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTACATTCTGCCCTTCCAAT-AAGAAACATGATTCAAGGGCTCCCAAA  898

seq1  TAAAAACTCAGAGTGGTGTGTGGACAAAATATAGCTGTTCAAGTTAGATT  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAACTCAGAGTGGTGTGTGGACAAAATATAGCTGTTCAAGTTAGATT  947

seq1  TAAATATCAAGTAACCAACAGACACATTGTAATGGAATAATGGAATATAT  1000
      | |||||| ||||  | ||||||||| |||||||  ||    ||||| ||
seq2  T-AATATC-AGTA--CCACAGACACA-TGTAATGATAT----GAATA-AT  987

seq1  AT-TCTAGGAGATGATTCTACCAAAAATAAAGCACTGTTCCCTTCATTTC  1049
      || |||| ||||||| |||| |||||||||||||||| ||||||||||||
seq2  ATATCTA-GAGATGA-TCTA-CAAAAATAAAGCACTG-TCCCTTCATTTC  1033

seq1  AAATTAGAAGAGCATACTGGAATACTGGATCTTGTTTGTTTTGTTTGATT  1099
      ||  |||||||||||||| | ||||| |||| || | |||| ||| ||||
seq2  AA--TAGAAGAGCATACT-GCATACT-GATC-TGCTGGTTTGGTTGGATT  1078

seq1  AATTGATTGACTTTAGTTTTATCTTTATTAAATCAGGCAACAAACTTGAG  1149
       |||||||||| | || |||||||    |||||||||   || |||||||
seq2  -ATTGATTGACCTAAGCTTTATCT---ATAAATCAGG---CACACTTGAG  1121

seq1  GGAGAAAAAGCTATGGAGAGGAGAATTTTATAGAAATAACT  1190
            ||||||||| ||| |||||||   |||||||||||
seq2  ------AAAGCTATGCAGA-GAGAATT---TAGAAATAACT  1152