BAC Information

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BAC

Clone NameB6Ng01-288A23
Chromosome19 (Build37)7 (Build37)
Map Location 4,875,931 - 4,876,422106,069,020 - 106,069,144
singlet/doubletsingletsinglet
Overlap geneActn3
Upstream geneChka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf
Downstream geneZdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288A23.bB6Ng01-288A23.g
ACCGA085821GA085822
length487281
definitionB6Ng01-288A23.b B6Ng01-288A23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,875,931 - 4,876,422)(106,069,020 - 106,069,144)
sequence
aagaccatcttgggttacgtgagaccttttaaaaatgcctagaaatgttt
atgaaccaattttttttaatactgtcaaccacagtggactctggtatcag
gggagaacagaatgttccgaagctgggaaccatagatattggagtcactg
gtaagtgaagatgaatgcaggagcagggatggatggggcagggtggtacc
tgctgtaccacaggatgttacagctttgagataaacaaagcggaccgagg
gaagaaaacgcacatgtccacccacacacagggcatgctaactggttttc
agagcatctgccccgttctgttgatggattaatggtggacttgggttggt
ggtggagatcgttgatggacatgggtggctagaaattggaatgaaaggat
ggttctgatactttagatgacaaaggcaagaaagagactgccagcttttt
gtggtgggaacacccagactgtgatctgggagggtga
ctgatttgattaaaataattttaggaagaaagtttaaggagatggcttta
gttgttttgtcagaaagatgtaataaagttagaatcaagaatagaatgtg
ggggggggggactggagagatggcttagcgggtaagaacactgactattc
tttcaaaggtcccgagttcaaatcccagcaaccatatggtggctcactac
cattggtaatgagatctgatgccttcttctggtgtgtctgaagacagtgt
acttataataacaaatgaatctttaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4875931_4876422
seq2: B6Ng01-288A23.b_43_535

seq1  GAATTCAAGACCATCTTGGGTTACGTGAGACCTTTTAAAAATGCCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCATCTTGGGTTACGTGAGACCTTTTAAAAATGCCTAGAA  50

seq1  ATGTTTATGAACCAATTTTTTTTAATACTGTCAACCACAGTGGACTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGAACCAATTTTTTTTAATACTGTCAACCACAGTGGACTCTGG  100

seq1  TATCAGGGGAGAACAGAATGTTCCGAAGCTGGGAACCATAGATATTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGGAGAACAGAATGTTCCGAAGCTGGGAACCATAGATATTGGAG  150

seq1  TCACTGGTAAGTGAAGATGAATGCAGGAGCAGGGATGGATGGGGCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTAAGTGAAGATGAATGCAGGAGCAGGGATGGATGGGGCAGGGT  200

seq1  GGTACCTGCTGTACCACAGGATGTTACAGCTTTGAGATAAACAAAGCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGCTGTACCACAGGATGTTACAGCTTTGAGATAAACAAAGCGGA  250

seq1  CCGAGGGAAGAAAACGCACATGTCCACCCACACACAGGGCATGCTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGAAGAAAACGCACATGTCCACCCACACACAGGGCATGCTAACTG  300

seq1  GTTTTCAGAGCATCTGCCCCGTTCTGTTGATGGATTAATGGTGGACTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGAGCATCTGCCCCGTTCTGTTGATGGATTAATGGTGGACTTGG  350

seq1  GTTGGTGGTGGAGATCGTTGATGGACATGGGTGGCTAGAAATTGGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGTGGAGATCGTTGATGGACATGGGTGGCTAGAAATTGGAATGA  400

seq1  AAGGATGGTTCTGATACTTTAGATGACAAAGGCAAGAAAGAGACTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGTTCTGATACTTTAGATGACAAAGGCAAGAAAGAGACTGCCAG  450

seq1  C-TGTTGTGGTGGGAACACACAGACTGTGATCTGGGAGGGGGA  492
      | | ||||||||||||||| |||||||||||||||||||| ||
seq2  CTTTTTGTGGTGGGAACACCCAGACTGTGATCTGGGAGGGTGA  493

seq1: chr7_106069020_106069144
seq2: B6Ng01-288A23.g_237_351 (reverse)

seq1  TTTTTTTAAAGATTTATTTATTATAATATCTAAGTACACTGTAGCTGACT  50
      |||||||||||||| |||| ||||    | ||||||||||||      ||
seq2  TTTTTTTAAAGATTCATTTGTTAT----TATAAGTACACTGT------CT  40

seq1  TCAGATGCACCAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGTGAGC  100
      |||||  |||||||||| ||| ||||||||||||||  ||||| ||||||
seq2  TCAGACACACCAGAAGAAGGCATCAGATCTCATTACCAATGGTAGTGAGC  90

seq1  CACCATGTGGTTGCTGGGATTTGAA  125
      |||||| ||||||||||||||||||
seq2  CACCATATGGTTGCTGGGATTTGAA  115