BAC Information

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BAC

Clone NameB6Ng01-288G16
Chromosome19 (Build37)
Map Location 38,320,869 - 38,480,361
singlet/doubletdoublet
Overlap geneLgi1, Tmem20
Upstream geneIde, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
Downstream geneLOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G16.bB6Ng01-288G16.g
ACCGA086084GA086085
length5101,150
definitionB6Ng01-288G16.b B6Ng01-288G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,320,869 - 38,321,384)(38,479,222 - 38,480,361)
sequence
tgcctgctcaccatccactaatagacgcttcacattaaattgcatgtttt
caatagggaaaaatggaacagttcccattaacacttgacaatcaatcagt
gatgctggctgcttctcccacggagaaaacaaacccgaggaaatgagaca
aatactcacttgtccctcaatctttaaagtcaaattaacaattctccgtc
catccagttcctactccgttcccttgggagggaattattctaaatctgct
tttgagttcctcccaacatagccagggacctgcgaagagaacttcttaga
acacaatcaaagcttctggctacagcctcaaagctccctgagggcaggaa
ccactctgcccgcctcccccgcccccgtactacctccccacccccacccc
cacaccccctcacacccccacacccgcaccctacccctgctttttcccgg
catcctccagaccgctacccacaccgtggaactcagggtgcaactgcaac
agggctccag
gaattcctagggcactacagaacctagctgtagaagacaacacaacttca
agctgctctgagctctgtgggtttagaaaagtgaaggtctcttaacagat
tactatttattttggagatgttgtatttgttgtgtatgaggaacagataa
agtttgaaaatttaagatcacagcctacaaaacggctagaggcgagtctt
ctatagaaaatgagttttgaagcgcccggtcgagaagagaaacgagtcgt
gagacactttctatagttgtaaaacccaacatctttcttttatgatttta
ttacttacaaaataaaaacacattaggaaaaaaatatttccctttgcaag
atatagaaactacaatctttggaaaatacataaacccccgtaattgttac
aatacatagccttgtataccacttgaacattgtttaaaaatcataccctg
taaaggttggtataagaaacattgtctccaatgtcagccacatatcctga
catccatgtacttaagacacagttgaaatataatgtatttccaaaggggt
tatcttccactatcccagacactcttctattgtgtaagtttggtggtact
ccaggagtggaactcagtaagaggaggctgctatggaaaccagctattgc
agccctccctcccgtcatccctcaggatgccctctaagacccctccagag
tactaagagtctgctgactctgtgttttctaggatgttggtagaacggca
ccattggcagatctatgcggggtcaaatgcaactgaggtgattcagctaa
gtacatatgtaggatgtcaggtggctaaggtgatttaaaaccaccaactc
aaagttcctcttaggaactactggagaagatcctttcatagctaaatgta
agatccaggagaccagtcccttcctccagaagagctgtgaggagtgtggg
gagagagcaatagccccttcaagtctgcagctaatgataacagtagacag
gtgtctgacaagttagaggtggcagccacaatgggcctcacataaaggca
tcgaaggccgccccaaagaacggcatggtcaattactcccgattctacca
aggttttactcttgcacagaggagtacctgggacctgctgggtgctccac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38320869_38321384
seq2: B6Ng01-288G16.b_45_560

seq1  GAATTCTGCCTGCTCACCATCCACTAATAGACGCTTCACATTAAATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCTCACCATCCACTAATAGACGCTTCACATTAAATTGCA  50

seq1  TGTTTTCAATAGGGAAAAATGGAACAGTTCCCATTAACACTTGACAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAATAGGGAAAAATGGAACAGTTCCCATTAACACTTGACAATCA  100

seq1  ATCAGTGATGCTGGCTGCTTCTCCCACGGAGAAAACAAACCCGAGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGATGCTGGCTGCTTCTCCCACGGAGAAAACAAACCCGAGGAAAT  150

seq1  GAGACAAATACTCACTTGTCCCTCAATCTTTAAAGTCAAATTAACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAATACTCACTTGTCCCTCAATCTTTAAAGTCAAATTAACAATTC  200

seq1  TCCGTCCATCCAGTTCCTACTCCGTTCCCTTGGGAGGGAATTATTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCCATCCAGTTCCTACTCCGTTCCCTTGGGAGGGAATTATTCTAAA  250

seq1  TCTGCTTTTGAGTTCCTCCCAACATAGCCAGGGACCTGCGAAGAGAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTGAGTTCCTCCCAACATAGCCAGGGACCTGCGAAGAGAACTT  300

seq1  CTTAGAACACAATCAAAGCTTCTGGCTACAGCCTCAAAGCTCCCTGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACACAATCAAAGCTTCTGGCTACAGCCTCAAAGCTCCCTGAGGG  350

seq1  CAGGAACCACTCTGCCCGCCTCCCCCGCCCCCGTACTACCTCCCCACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCACTCTGCCCGCCTCCCCCGCCCCCGTACTACCTCCCCACCCC  400

seq1  CACCCCCACACCCCCCCACACCCCCACACCCGCACCCTACCCCTGCTATC  450
      ||||||||||||||| ||||||||||||||||||||||||||||||| | 
seq2  CACCCCCACACCCCCTCACACCCCCACACCCGCACCCTACCCCTGCTTTT  450

seq1  TCCCGGCATCTTCCAGAACGCTACCCACACCGTGGAACTCAGGGTGCAAC  500
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TCCCGGCATCCTCCAGACCGCTACCCACACCGTGGAACTCAGGGTGCAAC  500

seq1  TGCAACAGGGCTCCAG  516
      ||||||||||||||||
seq2  TGCAACAGGGCTCCAG  516

seq1: chr19_38479222_38480361
seq2: B6Ng01-288G16.g_65_1214 (reverse)

seq1  GTGGAGCA-CCAGCAGG--CCA-GTACTCCTCTGTGAAAGAGGAAAA-CT  45
      |||||||| ||||||||  ||| ||||||||||||| ||||| |||| ||
seq2  GTGGAGCACCCAGCAGGTCCCAGGTACTCCTCTGTGCAAGAGTAAAACCT  50

seq1  TGGTAG-ATTGGGAGTAAATGACCATGC--GTCTTTGGGGC-GCTTTGGA  91
      |||||| || |||||||| |||||||||   |||||||||| || || ||
seq2  TGGTAGAATCGGGAGTAATTGACCATGCCGTTCTTTGGGGCGGCCTTCGA  100

seq1  TGCCTTTATGGTGAGG-CCATTGTGGCTGCCACCTCTTACTTTGTCAGAC  140
      ||||||||| |||||| |||||||||||||||||||| || |||||||||
seq2  TGCCTTTAT-GTGAGGCCCATTGTGGCTGCCACCTCTAAC-TTGTCAGAC  148

seq1  A-CTGTCTACTGTTATCATTAGCTGCAGACTTG-AGGGGCTATTGCTCTC  188
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTGTCTACTGTTATCATTAGCTGCAGACTTGAAGGGGCTATTGCTCTC  198

seq1  T-CCCACACTCCTCACAGCTCTTCTGGAGGAAGGGACTGGTCTCCTGGAT  237
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACACTCCTCACAGCTCTTCTGGAGGAAGGGACTGGTCTCCTGGAT  248

seq1  CTTACATTTAGCTATGAAAGGATCTTCTCCAGTAGTTCCTAAGAGGAACT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTTAGCTATGAAAGGATCTTCTCCAGTAGTTCCTAAGAGGAACT  298

seq1  TTGAGTTTGGTGGTTTTAAATCACCTTAGCCACCTGACATCCTACATATG  337
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAG-TTGGTGGTTTTAAATCACCTTAGCCACCTGACATCCTACATATG  347

seq1  TACTTAGCTGAATCACCTCAGTTGCATTTGACCCCGCATAGATCTGCCAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCTGAATCACCTCAGTTGCATTTGACCCCGCATAGATCTGCCAA  397

seq1  TGGTGCCGTTCTACCAACATCCTAGAAAACACAGAGTCAGCAGACTCTTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCGTTCTACCAACATCCTAGAAAACACAGAGTCAGCAGACTCTTA  447

seq1  GTACTCTGGAGGGGTCTTAGAGGGCATCCTGAGGGATGACGGGAGGGAGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGGAGGGGTCTTAGAGGGCATCCTGAGGGATGACGGGAGGGAGG  497

seq1  GCTGCAATAGCTGGTTTCCATAGCAGCCTCCTCTTACTGAGTTCCACTCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATAGCTGGTTTCCATAGCAGCCTCCTCTTACTGAGTTCCACTCC  547

seq1  TGGAGTACCACCAAACTTACACAATAGAAGAGTGTCTGGGATAGTGGAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACCACCAAACTTACACAATAGAAGAGTGTCTGGGATAGTGGAAG  597

seq1  ATAACCCCTTTGGAAATACATTATATTTCAACTGTGTCTTAAGTACATGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCTTTGGAAATACATTATATTTCAACTGTGTCTTAAGTACATGG  647

seq1  ATGTCAGGATATGTGGCTGACATTGGAGACAATGTTTCTTATACCAACCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGATATGTGGCTGACATTGGAGACAATGTTTCTTATACCAACCT  697

seq1  TTACAGGGTATGATTTTTAAACAATGTTCAAGTGGTATACAAGGCTATGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGTATGATTTTTAAACAATGTTCAAGTGGTATACAAGGCTATGT  747

seq1  ATTGTAACAATTACGGGGGTTTATGTATTTTCCAAAGATTGTAGTTTCTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAACAATTACGGGGGTTTATGTATTTTCCAAAGATTGTAGTTTCTA  797

seq1  TATCTTGCAAAGGGAAATATTTTTTTCCTAATGTGTTTTTATTTTGTAAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCAAAGGGAAATATTTTTTTCCTAATGTGTTTTTATTTTGTAAG  847

seq1  TAATAAAATCATAAAAGAAAGATGTTGGGTTTTACAACTATAGAAAGTGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATCATAAAAGAAAGATGTTGGGTTTTACAACTATAGAAAGTGT  897

seq1  CTCACGACTCGTTTCTCTTCTCGACCGGGCGCTTCAAAACTCATTTTCTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGACTCGTTTCTCTTCTCGACCGGGCGCTTCAAAACTCATTTTCTA  947

seq1  TAGAAGACTCGCCTCTAGCCGTTTTGTAGGCTGTGATCTTAAATTTTCAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACTCGCCTCTAGCCGTTTTGTAGGCTGTGATCTTAAATTTTCAA  997

seq1  ACTTTATCTGTTCCTCATACACAACAAATACAACATCTCCAAAATAAATA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATCTGTTCCTCATACACAACAAATACAACATCTCCAAAATAAATA  1047

seq1  GTAATCTGTTAAGAGACCTTCACTTTTCTAAACCCACAGAGCTCAGAGCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGTTAAGAGACCTTCACTTTTCTAAACCCACAGAGCTCAGAGCA  1097

seq1  GCTTGAAGTTGTGTTGTCTTCTACAGCTAGGTTCTGTAGTGCCCTAGGAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGTTGTGTTGTCTTCTACAGCTAGGTTCTGTAGTGCCCTAGGAA  1147

seq1  TTC  1140
      |||
seq2  TTC  1150