BAC Information

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BAC

Clone NameB6Ng01-288J05
Chromosome19 (Build37)
Map Location 33,282,274 - 33,283,408
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288J05.bB6Ng01-288J05.g
ACCGA086203GA086204
length1,1901,139
definitionB6Ng01-288J05.b B6Ng01-288J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgttttgctctgtagcccactttttaaattgggttatttggt
tctctggaatctaacttctagaattctttgtatatactggattttagccc
tctattagatgtagtattggtaaagatcttttcacaatgtgtaggctgcc
attttgtcctcatgacagtgtcctttgccttacagaagcatttcaatttt
atgagatcccatttgtctatagttgatcttagagcccgaaccatggtatt
ctaatcaggaaattttctcctgtggccatatgttcaaagctttttcccaa
ttcctcttataataatagattcagtgtatgtttttatgtggaggttcttg
atccacttggccttgagctttgcacaagaagaaaagaatgggtcaattca
aattcttctacatgcagaccaccacttgagtcagcaccacttgttgaata
tgctgtactttttttccccactggatggttaaagcttgtcaaagatcaag
tgaccatagggtgtgggttcatttctgggtcttcacttctattccactga
tctacctgcctctgtaccaataccatgtggtttttattactattgctctg
tagcagagcttgaggtcagggatggtgattcccccagaagttctcttatt
gttgagaatagttttatctatgctggttttgttgttgctgttgttgttcc
aaatgaatttgagaattgctctatctctatgaagaattaagtttgaattt
tgatggggattgcattgaaccctgcaaactgcttttggtaatatggtcat
ttttactatgttaatcttgctgacccatgatcatggaatatctttacaaa
ttctgaggtcttcttcaattctttcttcaaagacttgaagttcttttcat
atagatatttcactttcttggttagagtcacaccatgatctttatattat
tgtgactattgtgaagggtggcattccctaattctttctcaaactgtcta
atccttgagtagagaagctactgattaagttaatttttatatcagccact
gtgcttcaagttgtttatcagcctgagagttcttgtgaaactttgagctt
gtatagttggactttttatggacaatgttaagcttattgccaattgcacc
cacctgtgtaatacacgtctcagaccatgatcagtcaacg
gaattcaagagaaagctcatgcactgtactgatttaactcctaagaccag
gccttccagctctgtggatacacaaagataaagctatcttagccagaata
gctgtgcttgctgcacttaaaagggatgtaggaatagaaccaaaagacca
agtttttataaatagtccctacaggaagctagtatggagcttgacaattt
accatttgagagtcattccttttgtgtgatagtgtcatcacagaagtggt
catctttcactccacctggaacaaattgagtgtgcacttggactccatag
gcatggctgtcgttaagcctggaagcacagtttcagaagtacttctggca
agcaataaatctagagtttattgatgacagacttcagcagttatagctat
gtaggagttccctggggaaatatttcttttatcctgagaggcatctctgg
agccagaaaaatctgggtctgaatttggttctgacatctgtatgacctta
ctccagttacttaatctccctcagcatctgcttgcttgtaaaatgagaat
aataatagtccctgccttaaagggctcttaaaacatgagattagatgata
gaaagtacttaacacaatacctagaatataaaagagaactgcaaaaatac
aataggattgatttttaaaaggcttttgagctatctttgagcatatcctt
tgtgtttgtaattatgtatctgtacacacacacacacacacacacacaca
cacacacacacacacacacacccatgagtctttcacttgctaaccatatg
ctctacccactgagttacacttcagcctggacacatcaggacagtataac
actaacaatacctttctgactttgtgtctcagagcagaagataaaaaaca
aaacaagagaacacttagtgggatcattatgcaaactaaagtgtttttat
ttagagggaaagtgtatatttttgaaaactttaatgcaaatttgtgattt
ttttttccagaaagaaatctgtttttagaaggttgaagatttagcccatt
tgttttgaaatgacaaaatccctgcattggatattttcctatcaccagga
taggtcaaactagtgaccacattaataggcttcataagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33282274_33283408
seq2: B6Ng01-288J05.g_70_1208

seq1  GAATTCAAGAGAAAGCTCATGCACTGTACTGATTTAACTCCTAAGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAAGCTCATGCACTGTACTGATTTAACTCCTAAGACCAG  50

seq1  GCCTTCCAGCTCTGTGGATACACAAAGATAAAGCTATCTTAGCCAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAGCTCTGTGGATACACAAAGATAAAGCTATCTTAGCCAGAATA  100

seq1  GCTGTGCTTGCTGCACTTAAAAGGGATGTAGGAATAGAACCAAAAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTTGCTGCACTTAAAAGGGATGTAGGAATAGAACCAAAAGACCA  150

seq1  AGTTTTTATAAATAGTCCCTACAGGAAGCTAGTATGGAGCTTGACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATAAATAGTCCCTACAGGAAGCTAGTATGGAGCTTGACAATTT  200

seq1  ACCATTTGAGAGTCATTCCTTTTGTGTGATAGTGTCATCACAGAAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGAGAGTCATTCCTTTTGTGTGATAGTGTCATCACAGAAGTGGT  250

seq1  CATCTTTCACTCCACCTGGAACAAATTGAGTGTGCACTTGGACTCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCACTCCACCTGGAACAAATTGAGTGTGCACTTGGACTCCATAG  300

seq1  GCATGGCTGTCGTTAAGCCTGGAAGCACAGTTTCAGAAGTACTTCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTGTCGTTAAGCCTGGAAGCACAGTTTCAGAAGTACTTCTGGCA  350

seq1  AGCAATAAATCTAGAGTTTATTGATGACAGACTTCAGCAGTTATAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAATCTAGAGTTTATTGATGACAGACTTCAGCAGTTATAGCTAT  400

seq1  GTAGGAGTTCCCTGGGGAAATATTTCTTTTATCCTGAGAGGCATCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGTTCCCTGGGGAAATATTTCTTTTATCCTGAGAGGCATCTCTGG  450

seq1  AGCCAGAAAAATCTGGGTCTGAATTTGGTTCTGACATCTGTATGACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAAAATCTGGGTCTGAATTTGGTTCTGACATCTGTATGACCTTA  500

seq1  CTCCAGTTACTTAATCTCCCTCAGCATCTGCTTGCTTGTAAAATGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTACTTAATCTCCCTCAGCATCTGCTTGCTTGTAAAATGAGAAT  550

seq1  AATAATAGTCCCTGCCTTAAAGGGCTCTTAAAACATGAGATTAGATGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGTCCCTGCCTTAAAGGGCTCTTAAAACATGAGATTAGATGATA  600

seq1  GAAAGTACTTAACACAATACCTAGAATATAAAAGAGAACTGCAAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACTTAACACAATACCTAGAATATAAAAGAGAACTGCAAAAATAC  650

seq1  AATAGGATTGATTTTTAAAAGGCTTTTGAGCTATCTTTGAGCATATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATTGATTTTTAAAAGGCTTTTGAGCTATCTTTGAGCATATCCTT  700

seq1  TGTGTTTGTAATTATGTATCTGT--ACACACACACACACACACACACACA  748
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TGTGTTTGTAATTATGTATCTGTACACACACACACACACACACACACACA  750

seq1  CACACACACACACACACACACCCATGAGTCTTTCACTTGCTAACCATATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACCCATGAGTCTTTCACTTGCTAACCATATG  800

seq1  CTCTA-CCACTGAGTTACACTTCAGCCTGGACACATCAGGACAGTATAAC  847
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCACTGAGTTACACTTCAGCCTGGACACATCAGGACAGTATAAC  850

seq1  ACTAACAATACC-TTCTGACTTTGTGTCTCAGAGCAGAAGAT-AAAAACA  895
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  ACTAACAATACCTTTCTGACTTTGTGTCTCAGAGCAGAAGATAAAAAACA  900

seq1  AAACAAGAGAACACTTAGT-GGATCATTATGCAAACTAAAGTG-TTTTAT  943
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AAACAAGAGAACACTTAGTGGGATCATTATGCAAACTAAAGTGTTTTTAT  950

seq1  TTAGAGGGAAGGTGTATATTTTTGAAAAC-TTAATGCAAA-TTGTGATTT  991
      |||||||||| |||||||||||||||||| |||||||||| |||||||||
seq2  TTAGAGGGAAAGTGTATATTTTTGAAAACTTTAATGCAAATTTGTGATTT  1000

seq1  TTTTTT-CAGAAAGAAATCTG-TTTTAGAAGGTTGAAGATTTAG-CCATT  1038
      |||||| |||||||||||||| |||||||||||||||||||||| |||||
seq2  TTTTTTCCAGAAAGAAATCTGTTTTTAGAAGGTTGAAGATTTAGCCCATT  1050

seq1  TGTTTTTGAAAATGAACAAAAT-CCTGCATTTTGGATAATTTTCCTATCA  1087
      ||||||   ||||| ||||||| ||||||  |||||| ||||||||||||
seq2  TGTTTT--GAAATG-ACAAAATCCCTGCA--TTGGAT-ATTTTCCTATCA  1094

seq1  CCAAGGATAGTTTCAAACTAGTGACCCACTTTATTAGGCTTCTTAAGG  1135
      || |||||||  |||||||||||| |||| ||| |||||||| |||||
seq2  CC-AGGATAG-GTCAAACTAGTGA-CCACATTAATAGGCTTCATAAGG  1139