BAC Information

Click to search

BAC

Clone NameB6Ng01-290C20
Chromosome19 (Build37)
Map Location 20,103,809 - 20,104,858
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C20.bB6Ng01-290C20.g
ACCGA087382GA087383
length1,0401,164
definitionB6Ng01-290C20.b B6Ng01-290C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccattcagatccagtcaccttatgggttgtaacagtctctgct
ccttctccctcattgcaattactattatgcttgaattttatatgggctcc
atggatctaaaatccatgtcctcgtgcttgcatagcaagcacattatctg
ccgagttatctcaccaactgcaaagtagatctttcttaaaatatgttaat
cgttgttcaaaataaattcttcattttttacttggaaattcctgaatata
ttcttctattttagagggttttgccttaattctatttttgatatttgtat
gatcttcttagtcatggtttcccttatccctgtatacacttctatagtac
aaagtaccagataggtcatcaatgcttctcttgagagtagaactggattt
tgcaatttgctaatgagtggtacacaaaatagcaggaggagacttagcag
gatgcctcatcatcaaggttttcctttgtcactggtttactgaggatatt
cacttttgccattcttaggctgaaattcattcaataataatttaatatct
aagtagcttttagagttttttttttaagcagccatcacttgtatgtattc
aggatgcacagtacaataatttgattgacaaatttaattcatgttttatt
gatctccataacagaaacttttgttgagttaatatgtgcatcagatgaat
aacagaacaacagtatagaaaagaaacatcttttcttaacttggtcttat
aaatcagaatctatctcaagtatttccttgcttataaagctttgtttttg
agactttccttacttccttccaattctagaatccaacttctttattgttc
cagagaacattatacaatatagtcatctctgttttcctgctttaaatgat
gttcacaggctggtacttggatatagacttttgtttttttctttttcttt
tccttttcttttctttttttttcttttcttttcttttcttttcttttctt
tcttttctttcttttcttttcatttcttttccttttcttt

gaattcctgatctatccaatacttttaacatgaagttgtattgtattttg
tcagatgcttttccaccatctaatgagatgatcatgtgatttttttcctt
tgagatgtttatataatagattatgttaatggattttttttatattgaac
caatcttgcatccctgagatgaagcctacaggattgtggtgaatgatggt
tttggtgtgttcttagatttggtttgctagaatttattgtatattttgca
tcaatattgataagcaaaattggcctgaagtcctttttcatttctggtct
ttgtgtggattaggcatcagaataactgtggcttcatagagtgaattagg
tagtgttccttcagtttttattttgtagaatagtttgagtagtatttgta
ttagcttttctttgaggatctggtgaattccatgctcaagcgttatgata
tttggctatttttcattgggaaatttttaacgacttcttctatttcttta
tgggactgtttagatagtttaccttcttttaatttaattttggtatgtgg
tatttggatagaaaaatcatcattttgtctagattttccatttgtattga
gtatgggctttggtaggaagttctgatgatttttttttttaatttcctca
gtttctcctgttaagtcccccttttcattttttattttattaatttggat
gttatctctgggatctttaattgctttggctatgggtttatctatcttgt
tgatttactcaaagaactaggtgttgggttttgcgattctttgtattgtt
ctctttgtttctaactgtttgattttgaccctgagtttgactatttccta
ccatctactcctcttggttgtgtttgctattttttgttctatgactttta
ggtgtgctgttaagttgctagtgtaagatccctctaactttctttacagg
atacttagtgctatgaaattttctcttagcattgctttaccttgcacaaa
actcacttcagtggatcaaggacctcatcctaaatcaggtatacttgaat
ctattataatatgagaaatgttgccagggaacgcgggcgtgctgttgtgg
ctctctctctaatcagcggggatacatcatggtgttttggacagcatgca
tgtgcccagcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20103809_20104858
seq2: B6Ng01-290C20.b_44_1083 (reverse)

seq1  AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA  50
      |||||||| |||||   ||| |||||   |||||||| | || ||  |||
seq2  AAAGAAAAGGAAAA--GAAATGAAAA--GAAAAGAAAGAAAAGAAAGAAA  46

seq1  AGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAAAGAAAAAGAAAAAGGA  100
      ||||||   |||||||||   |||||||||||||||||||   |||||||
seq2  AGAAAA--GAAAAGAAAA--GAAAAGAAAAAAAAAGAAAA--GAAAAGGA  90

seq1  AAAGAAAAAGAAAAAAACAAAAGTCTATATCCAAGTACCAGCCTGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAAAACAAAAGTCTATATCCAAGTACCAGCCTGTGAAC  140

seq1  ATCATTTAAAGCAGGAAAACAGAGATGACTATATTGTATAATGTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAAAGCAGGAAAACAGAGATGACTATATTGTATAATGTTCTCTG  190

seq1  GAACAATAAAGAAGTTGGATTCTAGAATTGGAAGGAAGTAAGGAAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAAAGAAGTTGGATTCTAGAATTGGAAGGAAGTAAGGAAAGTCT  240

seq1  CAAAAACAAAGCTTTATAAGCAAGGAAATACTTGAGATAGATTCTGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAGCTTTATAAGCAAGGAAATACTTGAGATAGATTCTGATTT  290

seq1  ATAAGACCAAGTTAAGAAAAGATGTTTCTTTTCTATACTGTTGTTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCAAGTTAAGAAAAGATGTTTCTTTTCTATACTGTTGTTCTGTT  340

seq1  ATTCATCTGATGCACATATTAACTCAACAAAAGTTTCTGTTATGGAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGATGCACATATTAACTCAACAAAAGTTTCTGTTATGGAGATC  390

seq1  AATAAAACATGAATTAAATTTGTCAATCAAATTATTGTACTGTGCATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATGAATTAAATTTGTCAATCAAATTATTGTACTGTGCATCCT  440

seq1  GAATACATACAAGTGATGGCTGCTTAAAAAAAAAACTCTAAAAGCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATACAAGTGATGGCTGCTTAAAAAAAAAACTCTAAAAGCTACTT  490

seq1  AGATATTAAATTATTATTGAATGAATTTCAGCCTAAGAATGGCAAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAAATTATTATTGAATGAATTTCAGCCTAAGAATGGCAAAAGTG  540

seq1  AATATCCTCAGTAAACCAGTGACAAAGGAAAACCTTGATGATGAGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTCAGTAAACCAGTGACAAAGGAAAACCTTGATGATGAGGCATC  590

seq1  CTGCTAAGTCTCCTCCTGCTATTTTGTGTACCACTCATTAGCAAATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGTCTCCTCCTGCTATTTTGTGTACCACTCATTAGCAAATTGCA  640

seq1  AAATCCAGTTCTACTCTCAAGAGAAGCATTGATGACCTATCTGGTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGTTCTACTCTCAAGAGAAGCATTGATGACCTATCTGGTACTTT  690

seq1  GTACTATAGAAGTGTATACAGGGATAAGGGAAACCATGACTAAGAAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATAGAAGTGTATACAGGGATAAGGGAAACCATGACTAAGAAGATC  740

seq1  ATACAAATATCAAAAATAGAATTAAGGCAAAACCCTCTAAAATAGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATATCAAAAATAGAATTAAGGCAAAACCCTCTAAAATAGAAGAA  790

seq1  TATATTCAGGAATTTCCAAGTAAAAAATGAAGAATTTATTTTGAACAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAGGAATTTCCAAGTAAAAAATGAAGAATTTATTTTGAACAACG  840

seq1  ATTAACATATTTTAAGAAAGATCTACTTTGCAGTTGGTGAGATAACTCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATATTTTAAGAAAGATCTACTTTGCAGTTGGTGAGATAACTCGG  890

seq1  CAGATAATGTGCTTGCTATGCAAGCACGAGGACATGGATTTTAGATCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATGTGCTTGCTATGCAAGCACGAGGACATGGATTTTAGATCCAT  940

seq1  GGAGCCCATATAAAATTCAAGCATAATAGTAATTGCAATGAGGGAGAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCATATAAAATTCAAGCATAATAGTAATTGCAATGAGGGAGAAGG  990

seq1  AGCAGAGACTGTTACAACCCATAAGGTGACTGGATCTGAATGGAGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACTGTTACAACCCATAAGGTGACTGGATCTGAATGGAGAATTC  1040


| Home | SequenceCutter | Blast | Download |