BAC Information

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BAC

Clone NameB6Ng01-291C07
Chromosome19 (Build37)
Map Location 37,205,066 - 37,280,273
singlet/doubletdoublet
Overlap geneCpeb3
Upstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291C07.bB6Ng01-291C07.g
ACCGA088109GA088110
length1,127955
definitionB6Ng01-291C07.b B6Ng01-291C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,205,066 - 37,205,721)(37,279,411 - 37,280,273)
sequence
gaattcattgtttttaatagctaagtagtactccattgtataaatataac
acattttctgtatccatccctctgttgagagacatctgggttctttccag
tttctggctattataaataaggctgctatgaacttagtggagcatgtggc
ctttgttatatattggagcatcttctgggtatatgcccaggagtggtata
acctgagtcaccaggtggtaatatgtctgattttctgaggaacctccaaa
ctgatttccagagtggtcacaccaacttgcaatcccaccagcaatggaag
agtgttcctctttctccatatccttgccagcaactaatgtcccctgagtt
ttttatcttaaccattctgactggtgtgaggtagaatctcagggttgttt
tgatttgcatttccctgatgactaaggatgttgaacatttctttaggtgc
ttcttggccatttggtattccacaattgagaattctttgtttagctctgt
accccatttttttaatagggttatttggttctctggagtctaacttgagt
tctttgtatatattggatatatatcaaatgtaggattggtaaagatcttt
tcccaatctgttggttgctattgagagtgtcctttgccttacagaagctt
tgcaattttatgaggtcccatttgtcaattcttgatcttacagcataagc
tattgtgaacacacacacatatggtcacttgatctttgacaaagcagcta
aacctatccagtggaaaaaaagacagcattttcaacaaatggtgctggct
caactggcagttagcatgtagaagaatgagaattgatccattcttatctc
cttgtataaagttcaagtccaagtagatcaaggacctccacatgaaaaca
gagacactgaaacgtatagaaaagaaactgggaaagagcctcgagcacat
aggcacaggggtaaatttcctgatcaaataatttttctgttttctgggga
tgttgcccttttagcctgagtttgagcacagctaacatgtccctttgggc
tctttctaggagtagaaaatctcacttgaaaaggggtaatcatgctgcct
cactgaatactgcaactgtctttctta
gaattcactaggtacactaggctgagcttgaactcagaactttgcctccc
tctgtctcctgtgcttaaaggcttgtaccaacaaacaaggctacttttat
tattttttgtgggggtacacgtatgtgggcagaagtctaaggtcagcttt
gggtagattcatttattgttctccagactgggtttctcaaagaacccaga
gcttgttggttacctaaaccagctggccagagatctgcctacccttgtcc
tccctggggctaggattgtagatgccacaggtacacctggcctttgtgtg
agtactaggggctggaatttgggtctttatgcttaggttacaagtacttt
gtatctagagccttgtactggctagttttgtgtcaatttgacacagctgg
agttatcacagacaaaggagcttcagttgaggaaatgcctccatgagata
taactgtcaggcattttctcaattagtgattaaaggggaaaggccccttg
tgggtaggaccatctctgtgctggtagtcttggttctataagagagcagg
ctgagcaagccagtaaaaaatatccctccatggcctctgcatcagctctt
tctttctaacctgcttgagttccagtcctgacttcctttggtgatgaaca
gcagtatggaagtgtaagccaaataaaccctttcctccccaacttgcttc
ttggtcatgatgtttgtgcaggaatagaaaccctgactaagacaagcctc
tagaagcatggtttcatgaaatattttaggatactataattaatattcct
tctcatgaaaagagaaataggctgccaacctttggaaggaaaatgagtag
attaagcagagtgtgtaatatttaactttttttttttttttgcttcgtgt
gctatgtaagcctgcttctagtgtgcgtatctcttttaagcagttaacca
tgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37205066_37205721
seq2: B6Ng01-291C07.b_525_1172

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTTAATAGGGTTATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTTAATAGGGTTATTTGGT  50

seq1  TCTCTGGAGTCTAACTTGAGTTCTTTGTATATATTGGATATATATCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAGTCTAACTTGAGTTCTTTGTATATATTGGATATATATCAAAT  100

seq1  GTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTATTGAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTATTGAGAGTG  150

seq1  TCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAAT  200

seq1  TCTTGATCTTACAGCATAAGCTATTGTGAACACACACACATATGGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTTACAGCATAAGCTATTGTGAACACACACACATATGGTCACT  250

seq1  TGATCTTTGACAAAGCAGCTAAACCTATCCAGTGGAAAAAAAGACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTGACAAAGCAGCTAAACCTATCCAGTGGAAAAAAAGACAGCAT  300

seq1  TTTCAACAAATGGTGCTGGCTCAACTGGCAGTTAGCATGTAGAAGAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAAATGGTGCTGGCTCAACTGGCAGTTAGCATGTAGAAGAATGA  350

seq1  GAATTGATCCATTCTTATCTCCTTGTATAAAGTTCAAGTCCAAGTAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCCATTCTTATCTCCTTGTATAAAGTTCAAGTCCAAGTAGATC  400

seq1  AAGGACCTCCACATGAAAACAGAGACACTGAAACGTATAGAAAAGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTCCACATGAAAACAGAGACACTGAAACGTATAGAAAAGAAACT  450

seq1  GGGAAAGAGCCTCGAGCACATAGGCACAGGGGTAAATTTCCTGATCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAGCCTCGAGCACATAGGCACAGGGGTAAATTTCCTGATCAAAT  500

seq1  AATTTTTCTGTTTTCTGGGGATGTTGCCCTTTTAGCCTGAGTTTGAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTGTTTTCTGGGGATGTTGCCCTTTTAGCCTGAGTTTGAGCAC  550

seq1  AGCT-ACATGTCCCTTTGGGCTCTTTCCTAAGGAGTTAGAAAATCTCACC  599
      |||| ||||||||||||||||||||||   ||||| |||||||||||| |
seq2  AGCTAACATGTCCCTTTGGGCTCTTTC--TAGGAG-TAGAAAATCTCA-C  596

seq1  TTGAAAAGGGGGTTATCATTGCCTGCCCTCACTGGATACTTGCAACTGTC  649
      ||||||| ||||| |||||   ||| |||||||| |||| ||||||||||
seq2  TTGAAAA-GGGGTAATCAT--GCTG-CCTCACTGAATAC-TGCAACTGTC  641

seq1  TTTCTTA  656
      |||||||
seq2  TTTCTTA  648

seq1: chr19_37279411_37280273
seq2: B6Ng01-291C07.g_65_927 (reverse)

seq1  CACTCTGCTTAATCTACTCATTTTCCTTCCAAAGGTTGGCAGCCTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTTAATCTACTCATTTTCCTTCCAAAGGTTGGCAGCCTATTTC  50

seq1  TCTTTTCATGAGAAGGAATATTAATTATAGTATCCTAAAATATTTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATGAGAAGGAATATTAATTATAGTATCCTAAAATATTTCATGA  100

seq1  AACCATGCTTCTAGAGGCTTGTCTTAGTCAGGGTTTCTATTCCTGCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCTTCTAGAGGCTTGTCTTAGTCAGGGTTTCTATTCCTGCACAA  150

seq1  ACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTTAC  200

seq1  ACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAG  250

seq1  CAGGTTAGAAAGAAAGAGCTGATGCAGAGGCCATGGAGGGATATTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGAAAGAAAGAGCTGATGCAGAGGCCATGGAGGGATATTTTTTA  300

seq1  CTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCACAGAG  350

seq1  ATGGTCCTACCCACAAGGGGCCTTTCCCCTTTAATCACTAATTGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTACCCACAAGGGGCCTTTCCCCTTTAATCACTAATTGAGAAAA  400

seq1  TGCCTGACAGTTATATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACAGTTATATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTT  450

seq1  GTCTGTGATAACTCCAGCTGTGTCAAATTGACACAAAACTAGCCAGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGATAACTCCAGCTGTGTCAAATTGACACAAAACTAGCCAGTACA  500

seq1  AGGCTCTAGATACAAAGTACTTGTAACCTAAGCATAAAGACCCAAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTAGATACAAAGTACTTGTAACCTAAGCATAAAGACCCAAATTCC  550

seq1  AGCCCCTAGTACTCACACAAAGGCCAGGTGTACCTGTGGCATCTACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTAGTACTCACACAAAGGCCAGGTGTACCTGTGGCATCTACAATC  600

seq1  CTAGCCCCAGGGAGGACAAGGGTAGGCAGATCTCTGGCCAGCTGGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCAGGGAGGACAAGGGTAGGCAGATCTCTGGCCAGCTGGTTTAG  650

seq1  GTAACCAACAAGCTCTGGGTTCTTTGAGAAACCCAGTCTGGAGAACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAACAAGCTCTGGGTTCTTTGAGAAACCCAGTCTGGAGAACAATA  700

seq1  AATGAATCTACCCAAAGCTGACCTTAGACTTCTGCCCACATACGTGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCTACCCAAAGCTGACCTTAGACTTCTGCCCACATACGTGTACC  750

seq1  CCCACAAAAAATAATAAAAGTAGCCTTGTTTGTTGGTACAAGCCTTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAAAATAATAAAAGTAGCCTTGTTTGTTGGTACAAGCCTTTAAG  800

seq1  CACAGGAGACAGAGGGAGGCAAAGTTCTGAGTTCAAGCTCAGCCTAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACAGAGGGAGGCAAAGTTCTGAGTTCAAGCTCAGCCTAGTGT  850

seq1  ACCTAGTGAATTC  863
      |||||||||||||
seq2  ACCTAGTGAATTC  863