BAC Information

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BAC

Clone NameB6Ng01-291L23
Chromosome19 (Build37)
Map Location 35,752,109 - 35,879,189
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L23.bB6Ng01-291L23.g
ACCGA088557GA088558
length1,078381
definitionB6Ng01-291L23.b B6Ng01-291L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,752,109 - 35,753,175)(35,878,803 - 35,879,189)
sequence
gaattctcagctgagaaataccaaatggatgagaagcacctaaaaaaatg
ttcaacatccttagtcatgagagaaatacaaatcaaaacaaccctgagat
accgcctcacaacagtcagaatgactaagatcaaaaactcaggtggcagc
agatgctggtgaggatgtggagaaagagaagcactcctccattgctggtg
ggattgaaagctggcacaaccaatctggaaatcagtttggcagttcctct
gaaaattagacatagtattacctgaagatctttctaatgaaaataaattt
aaatttaaaacaagaggtggagagattacaatgcttggggggcatgaagt
taaatatgtggaagcaagtttaagagatatgcggatgagtgaggagaaat
agctttcatttaatcaggttcccagagggagtggggctgaaggagcatgt
gaagaatgccagaggattttgaaaaactgttaaatatcaagattttaaaa
gaccatagaagtcagagaatggcagggtttattattattattattattat
tattattattattattattatttttatttaagatacagaagagaagaaaa
tgttgtgtttatggcatgacttgactgttgtgctcatggactgacagctg
ccatgtttgcccacacaggagctgcacaagatcaagctactctgcatccc
agaatggattggagatcagctgccaaggctccacccctggaggaggagcg
attgataattaatgatggcctgtaaaaggataatcgtttcttctttgagg
ttgtggccatgatctaatggatggctccgcactgatgcacatacaggaca
ttaataagagtttttaaaagagaaaatgaaatgatgaggaataccctggg
aagcctccaaggggagtttaaaggggaaaaatatcaattggaaataatca
tacctgcattgccatacataagtaaatttgccacagaacaacttaaacat
accatattttttttaatttcaaagtcacaaacactttacaaataagatgt
ctttggtataactagataacattctaaa
atgcccttattaagatatgcatcataaattcactgttcttatgggaatct
taaccaaaaagagagcctgttattacatgaaagtgcaaacaaaaggttgt
attagtgttaaagaatgtcccaagggaacaaaaatatgagtaatagtatt
taaattgggtcagtagagtaaaaaccataatctgcaagggaataacagga
gacataagctataaataagaccctacagttccatgttcatgtctgtttat
ggcagtttctcatattttgcccttggcctttcttcttctgtggttatcag
attttttatttattgttccataatgaataatcccttttttgcatactaga
agccaggacagcggcggggggtggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35752109_35753175
seq2: B6Ng01-291L23.b_45_1122

seq1  GAATTCTCAGCTGAGAAATACCAAATGGATGAGAAGCACCTAAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGAGAAATACCAAATGGATGAGAAGCACCTAAAAAAATG  50

seq1  TTCAACATCCTTAGTCATGAGAGAAATACAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAGTCATGAGAGAAATACAAATCAAAACAACCCTGAGAT  100

seq1  ACCGCCTCACAACAGTCAGAATGACTAAGATCAAAAACTCAGGTGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCTCACAACAGTCAGAATGACTAAGATCAAAAACTCAGGTGGCAGC  150

seq1  AGATGCTGGTGAGGATGTGGAGAAAGAGAAGCACTCCTCCATTGCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGATGTGGAGAAAGAGAAGCACTCCTCCATTGCTGGTG  200

seq1  GGATTGAAAGCTGGCACAACCAATCTGGAAATCAGTTTGGCAGTTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAAAGCTGGCACAACCAATCTGGAAATCAGTTTGGCAGTTCCTCT  250

seq1  GAAAATTAGACATAGTATTACCTGAAGATCTTTCTAATGAAAATAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAGACATAGTATTACCTGAAGATCTTTCTAATGAAAATAAATTT  300

seq1  AAATTTAAAACAAGAGGTGGAGAGATTACAATGCTTGGGGGGCATGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAACAAGAGGTGGAGAGATTACAATGCTTGGGGGGCATGAAGT  350

seq1  TAAATATGTGGAAGCAAGTTTAAGAGATATGCGGATGAGTGAGGAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTGGAAGCAAGTTTAAGAGATATGCGGATGAGTGAGGAGAAAT  400

seq1  AGCTTTCATTTAATCAGGTTCCCAGAGGGAGTGGGGCTGAAGGAGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATTTAATCAGGTTCCCAGAGGGAGTGGGGCTGAAGGAGCATGT  450

seq1  GAAGAATGCCAGAGGATTTTGAAAAACTGTTAAATATCAAGATTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGCCAGAGGATTTTGAAAAACTGTTAAATATCAAGATTTTAAAA  500

seq1  GACCATAGAAGTCAGAGAATGGCAGGGTTTATTATTATTATTATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGAAGTCAGAGAATGGCAGGGTTTATTATTATTATTATTATTAT  550

seq1  TATTATTATTATTATTATTATTTTTATTTAAGATACAGAAGAGAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTTTTATTTAAGATACAGAAGAGAAGAAAA  600

seq1  TGTTGTGTTTATGGCATGACTTGACTGTTGTGCTCATGGACTGACAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTATGGCATGACTTGACTGTTGTGCTCATGGACTGACAGCTG  650

seq1  CCATGTTTGCCCACACAGGAGCTGCACAAGATCAAGCTACTCTGCATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTGCCCACACAGGAGCTGCACAAGATCAAGCTACTCTGCATCCC  700

seq1  AGAATGGATTGGAGATCAGCTGCCAAGGCTCCACCCCTGGAGGAGGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATTGGAGATCAGCTGCCAAGGCTCCACCCCTGGAGGAGGAGCG  750

seq1  ATTGATAATTAATGATGGCCTGTAAAAGGATAATCG-TTCTTCTTTGAGG  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGATAATTAATGATGGCCTGTAAAAGGATAATCGTTTCTTCTTTGAGG  800

seq1  TTGTGGCCATGATCTAATGGATGGCTCCGCACTGATGCACATACAGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCATGATCTAATGGATGGCTCCGCACTGATGCACATACAGGACA  850

seq1  TTAATAAGAGTTTTTAAAAGAGAAAATGAAATGATGAGG-ATACACTGGG  898
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  TTAATAAGAGTTTTTAAAAGAGAAAATGAAATGATGAGGAATACCCTGGG  900

seq1  AAG-CTCCAAGGGGAG-TTAAAGGGGAAAAATATCAATTGGATATAATCA  946
      ||| |||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AAGCCTCCAAGGGGAGTTTAAAGGGGAAAAATATCAATTGGAAATAATCA  950

seq1  TA-CTGCATTG-CATACATAAGTAAAATTGCCACAGAACAACTTAAA-AT  993
      || |||||||| |||||||||||||| |||||||||||||||||||| ||
seq2  TACCTGCATTGCCATACATAAGTAAATTTGCCACAGAACAACTTAAACAT  1000

seq1  A-CATA-TTTTTTTAATTTCAAAGTCACAAA-ACATTACAAATAAAATGT  1040
      | |||| |||||||||||||||||||||||| || |||||||||| ||||
seq2  ACCATATTTTTTTTAATTTCAAAGTCACAAACACTTTACAAATAAGATGT  1050

seq1  C-TGGGTATAACTAGATAACATTCTAAA  1067
      | | ||||||||||||||||||||||||
seq2  CTTTGGTATAACTAGATAACATTCTAAA  1078

seq1: chr19_35878803_35879189
seq2: B6Ng01-291L23.g_67_453 (reverse)

seq1  ACCCCCCCCACCCCCCGCCGCTGTCCTGGCTTCTAGTATGCAAAAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCACCCCCCGCCGCTGTCCTGGCTTCTAGTATGCAAAAAAGGG  50

seq1  ATTATTCATTATGGAACAATAAATAAAAAATCTGATAACCACAGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCATTATGGAACAATAAATAAAAAATCTGATAACCACAGAAGAAG  100

seq1  AAAGGCCAAGGGCAAAATATGAGAAACTGCCATAAACAGACATGAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAAGGGCAAAATATGAGAAACTGCCATAAACAGACATGAACATG  150

seq1  GAACTGTAGGGTCTTATTTATAGCTTATGTCTCCTGTTATTCCCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTAGGGTCTTATTTATAGCTTATGTCTCCTGTTATTCCCTTGCAG  200

seq1  ATTATGGTTTTTACTCTACTGACCCAATTTAAATACTATTACTCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGTTTTTACTCTACTGACCCAATTTAAATACTATTACTCATATTT  250

seq1  TTGTTCCCTTGGGACATTCTTTAACACTAATACAACCTTTTGTTTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCTTGGGACATTCTTTAACACTAATACAACCTTTTGTTTGCACT  300

seq1  TTCATGTAATAACAGGCTCTCTTTTTGGTTAAGATTCCCATAAGAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAATAACAGGCTCTCTTTTTGGTTAAGATTCCCATAAGAACAGT  350

seq1  GAATTTATGATGCATATCTTAATAAGGGCATGAATTC  387
      |||||||||||||||||||||||||||||||||||||
seq2  GAATTTATGATGCATATCTTAATAAGGGCATGAATTC  387