BAC Information

Click to search

BAC

Clone NameB6Ng01-291O14
Chromosome19 (Build37)
Map Location 15,982,565 - 16,120,674
singlet/doubletdoublet
Overlap genePsat1, LOC100041424, Cep78, LOC100042048
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291O14.bB6Ng01-291O14.g
ACCGA088680GA088681
length1,102352
definitionB6Ng01-291O14.b B6Ng01-291O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,982,565 - 15,983,668)(16,120,323 - 16,120,674)
sequence
gaattccaaaatggcaaccttgctgagcagtgaagaggggactatgtgga
agtagggaatggagagcagaggaggaagagggaacgggaggactgtggag
gaggaggctgcccaagctctggttagtttgctctcggttagcatgctggg
ctcctggcaggaatgtctggaggcacatgaccctggtccatggagagcgt
gctggccctctttcagcaatttgactgggtcagtaatgatgatgggtagt
gagtttgcacagtagtagatctgagttttagaaaaacagccatgggggct
ggagatggctcggtcagccagctgcttgctctgcatgtgcctgaatacag
cgacggtgtactcacatacataaaataaatttttttttaaagatgctaag
ttcatggatgctttattacagcagccccaggaaacatctacaagatccat
gtgttgtccagacctcacaaatgcagccagtgatcaacacatgaccaccc
atctttgtcatgaaagtatttaacttcaaccctgccaatctcattcagac
tgcaggtgagcgatggggacacctgtcctagaagcaaggagccagtgaac
tttgatagaaggggaaggagagcagactgttcaaattcccagagcataca
taatgcctgatgggcagaacacatctgcaatcccagggcttctaaggtaa
aatgggaggaggatccgtggcagctcacgggactgttagcccggcaaatg
tcactatgaaaagcaaagagaccctgcttcaaacaaggaagtgagggaaa
gtgatgactgccaaggaggttgacctcaaacctatacaggcaaaatgccc
atgtgtgcctgtgttcaagcccacatggggaggtggtatcaggagcaggg
atttacaatgagggaccaataggaaccttaaggcaaagctgaatagcctc
cctgcaacagtttccagtgtccacagggaagaaggagttgagaggggttc
tattcctgacagtaattatgcaccctaccccagtcagagtttttggggac
ttgacacaaggactggtgttcccagcgtgagcacatgagcaaagaacctt
tc

tacacacactgaatgaccagacttgagcctgcaagagagtgacccataac
cccagttctgcaagtgggcactgccctcttaatccatacagacatgagtt
tcttcatctcaaaattaagtaaattagctgacaagaattttcatttcctc
tagaaagagtcagagactagtgctgattttctggagtggggacaattttg
aaagagaaattagaagcagcagtgagaatgttaacatgactagttagtgt
gctaggagttctttgtgcgtgtgcatgcatcgtgtgtgtgcatgtgcgtg
cgtgcgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15982565_15983668
seq2: B6Ng01-291O14.b_48_1149

seq1  GAATTCCAAAATGGCAACCTTGCTGAGCAGTGAAGAGGGGACTATGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGGCAACCTTGCTGAGCAGTGAAGAGGGGACTATGTGGA  50

seq1  AGTAGGGAATGGAGAGCAGAGGAGGAAGAGGGAACGGGAGGACTGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAATGGAGAGCAGAGGAGGAAGAGGGAACGGGAGGACTGTGGAG  100

seq1  GAGGAGGCTGCCCAAGCTCTGGTTAGTTTGCTCTCGGTTAGCATGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCTGCCCAAGCTCTGGTTAGTTTGCTCTCGGTTAGCATGCTGGG  150

seq1  CTCCTGGCAGGAATGTCTGGAGGCACATGACCCTGGTCCATGGAGAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCAGGAATGTCTGGAGGCACATGACCCTGGTCCATGGAGAGCGT  200

seq1  GCTGGCCCTCTTTCAGCAATTTGACTGGGTCAGTAATGATGATGGGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTCTTTCAGCAATTTGACTGGGTCAGTAATGATGATGGGTAGT  250

seq1  GAGTTTGCACAGTAGTAGATCTGAGTTTTAGAAAAACAGCCATGGGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCACAGTAGTAGATCTGAGTTTTAGAAAAACAGCCATGGGGGCT  300

seq1  GGAGATGGCTCGGTCAGCCAGCTGCTTGCTCTGCATGTGCCTGAATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGCTCGGTCAGCCAGCTGCTTGCTCTGCATGTGCCTGAATACAG  350

seq1  CGACGGTGTACTCACATACATAAAATAAATTTTTTTTTAAAGATGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGGTGTACTCACATACATAAAATAAATTTTTTTTTAAAGATGCTAAG  400

seq1  TTCATGGATGCTTTATTACAGCAGCCCCAGGAAACATCTACAAGATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGATGCTTTATTACAGCAGCCCCAGGAAACATCTACAAGATCCAT  450

seq1  GTGTTGTCCAGACCTCACAAATGCAGCCAGTGATCAACACATGACCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCCAGACCTCACAAATGCAGCCAGTGATCAACACATGACCACCC  500

seq1  ATCTTTGTCATGAAAGTATTTAACTTCAACCCTGCCAATCTCATTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTCATGAAAGTATTTAACTTCAACCCTGCCAATCTCATTCAGAC  550

seq1  TGCAGGTGAGCGATGGGGACACCTGTCCTAGAAGCAAGGAGCCAGTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGAGCGATGGGGACACCTGTCCTAGAAGCAAGGAGCCAGTGAAC  600

seq1  TTTGATAGAAGGGGAAGGAGAGCAGACTGTTCAAATTCCCAGAGCATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGAAGGGGAAGGAGAGCAGACTGTTCAAATTCCCAGAGCATACA  650

seq1  TAATGCCTGATGGGCAGAACACATCTGCAATCCCAGGGCTTCTAAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTGATGGGCAGAACACATCTGCAATCCCAGGGCTTCTAAGGTAA  700

seq1  AATGGGAGGAGGATCCGTGGCAGCTCACGGGACTGTTAGCCCGGCAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGAGGATCCGTGGCAGCTCACGGGACTGTTAGCCCGGCAAATG  750

seq1  TCACTATGAAAAGCAAAGAGACCCTGCTTCAAACAAGGAAGTGAGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGAAAAGCAAAGAGACCCTGCTTCAAACAAGGAAGTGAGGGAAA  800

seq1  GTGATGACTGCCAAGGAGGTTGACCTCAAACCTATACAGGCAAAATGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACTGCCAAGGAGGTTGACCTCAAACCTATACAGGCAAAATGCCC  850

seq1  ATGTGTGCCTGTGTTCAAGCCCACATGGGGAGGTGGTATCAGGAGCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCCTGTGTTCAAGCCCACATGGGGAGGTGGTATCAGGAGCAGGG  900

seq1  ATTTACAATGAGGGACCAATAGGAAACCTTAGGCAAAGCTG-ATAGCCT-  948
      ||||||||||||||||||||||||| | | ||||||||||| ||||||| 
seq2  ATTTACAATGAGGGACCAATAGGAACCTTAAGGCAAAGCTGAATAGCCTC  950

seq1  CCTGCAACAGTTTCCAGTGTCACAAGGGAAGAAGGAGTGGAGAGGGGTTC  998
      |||||||||||||||||||||   |||||||||||||| |||||||||||
seq2  CCTGCAACAGTTTCCAGTGTCCACAGGGAAGAAGGAGTTGAGAGGGGTTC  1000

seq1  TATCCCTGACAGTAAATAATGCACCCTACCCCAGGTCAGAGTTTTTGGGG  1048
      ||| ||||||||| ||| ||||||||||||||| ||||||||||||||||
seq2  TATTCCTGACAGT-AATTATGCACCCTACCCCA-GTCAGAGTTTTTGGGG  1048

seq1  ACTTGACACAAAAGACTGGTGTTTCCCAGCGTGAGGCACAAGAGCAAAGA  1098
      ||||||||| || |||||||| |||||||||||| ||||| |||||||||
seq2  ACTTGACAC-AAGGACTGGTG-TTCCCAGCGTGA-GCACATGAGCAAAGA  1095

seq1  A-CTTTC  1104
      | |||||
seq2  ACCTTTC  1102


seq1: chr19_16120323_16120674
seq2: B6Ng01-291O14.g_75_426 (reverse)

seq1  CACACACACACACACACACACACACACACACACACGCACATGCACACGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGCACATGCACACGCA  50

seq1  CGCACGCACATGCACACACACGATGCATGCACACGCACAAAGAACTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCACATGCACACACACGATGCATGCACACGCACAAAGAACTCCTA  100

seq1  GCACACTAACTAGTCATGTTAACATTCTCACTGCTGCTTCTAATTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAACTAGTCATGTTAACATTCTCACTGCTGCTTCTAATTTCTCT  150

seq1  TTCAAAATTGTCCCCACTCCAGAAAATCAGCACTAGTCTCTGACTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTGTCCCCACTCCAGAAAATCAGCACTAGTCTCTGACTCTTTC  200

seq1  TAGAGGAAATGAAAATTCTTGTCAGCTAATTTACTTAATTTTGAGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAATGAAAATTCTTGTCAGCTAATTTACTTAATTTTGAGATGAA  250

seq1  GAAACTCATGTCTGTATGGATTAAGAGGGCAGTGCCCACTTGCAGAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATGTCTGTATGGATTAAGAGGGCAGTGCCCACTTGCAGAACTG  300

seq1  GGGTTATGGGTCACTCTCTTGCAGGCTCAAGTCTGGTCATTCAGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGGGTCACTCTCTTGCAGGCTCAAGTCTGGTCATTCAGTGTGTG  350

seq1  TA  352
      ||
seq2  TA  352


| Home | SequenceCutter | Blast | Download |