BAC Information

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BAC

Clone NameB6Ng01-291O20
Chromosome19 (Build37)
Map Location 20,174,055 - 20,296,502
singlet/doubletdoublet
Overlap geneLOC100041541
Upstream geneRorb, LOC100042218
Downstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291O20.bB6Ng01-291O20.g
ACCGA088692GA088693
length1,167490
definitionB6Ng01-291O20.b B6Ng01-291O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,174,055 - 20,175,252)(20,296,007 - 20,296,502)
sequence
gaattccacttcacttacagttacacacatctacaaattgcaaatgtacg
tgaacaatgtgcctgtaaggataaaggcttcagaaaaattcatttgatat
aattgtgtgtcacaaatttctccttggaaacaattatatttccctttaaa
aactcaaacacaaacttcactggcagacactgggaagacaacccagacag
tagcacaagaaattgtttagatccaacacaatcccacctcaaatatagag
tttctcatcccagatgccaagttgagtctgtcagataaaacctgttattg
ctatcattagccaaagagtaaatccctgatagatgagcatgccatagggt
gccccttcagtcatctctggctcagccctgccattaatctcaggaaaggc
tttttgtgttctttcagccagactgaaacgctgtgaccttgggctttgga
cactgacattggactaagactagagaatcgaagattctttcctttcctct
gacttcttactgaaacagctgacgtgaactgaattacctggtgcggtatt
gcaagtttcttgttttgagatgaatacacacaagcattgcatacacatgt
gcatgcacacacacacacacacacacacacacacacacacacacagagag
agagagagaggggggggggctaactcacccaaattcttattttcttttct
tttttttctttttttaaaaatattttttattattacgtattttcctcaat
tacatttagaatgctatcccaaaagtcccccataccttccccccacttcc
ctacccacccattcccattttttggccctggcattcccctgtactggggc
acataaagtttgcgcttcagtttcatggacgaataagtactgtatcgaac
aatgttctttaataactgctatttttatttacttttatggggcaatacaa
actgcaaactagataaaatctgtagtctctctatcctaaacacagggcaa
gagatttttgctgtgagaggagagtatgcatcagttttcactatattctc
atacaatccacagatactagcatattttgattctagatgtctatagaact
acattagatcttacaaagtatgtgtctaacctttattacattttggagat
gcctcagtaccctggtg

cagatgtttaatgattgtcaactaaaaactttctccaagttcctagatat
ctcccactgctgaagaggacctgaataggaagttagcaacaatcgagcag
tggaaagtaaggtcatttttctttgtttgtttgtttgtttgtttttgttt
gtttgtttgttttcatttttccagacagggtttctctgtatagccctggc
tgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatct
gcctgcctctgcctcccgagtgctgggattgaaggcatgcactgccacca
gaacttaagagctgacttagctctgcttcaaattattcaggatgcaaatt
taattggttttactttatctatctatctatctatctatctatctatctat
ctatctatctatctatctatccatctattattatttattctttatttttc
tgtttggtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20174055_20175252
seq2: B6Ng01-291O20.b_51_1217

seq1  GAATTCCACTTCACTTACAGTTACACACATCTACAAATTGCAAATGTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCACTTACAGTTACACACATCTACAAATTGCAAATGTACG  50

seq1  TGAACAATGTGCCTGTAAGGATAAAGGCTTCAGAAAAATTCATTTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATGTGCCTGTAAGGATAAAGGCTTCAGAAAAATTCATTTGATAT  100

seq1  AATTGTGTGTCACAAATTTCTCCTTGGAAACAATTATATTTCCCTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTGTCACAAATTTCTCCTTGGAAACAATTATATTTCCCTTTAAA  150

seq1  AACTCAAACACAAACTTCACTGGCAGACACTGGGAAGACAACCCAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAACACAAACTTCACTGGCAGACACTGGGAAGACAACCCAGACAG  200

seq1  TAGCACAAGAAATTGTTTAGATCCAACACAATCCCACCTCAAATATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAGAAATTGTTTAGATCCAACACAATCCCACCTCAAATATAGAG  250

seq1  TTTCTCATCCCAGATGCCAAGTTGAGTCTGTCAGATAAAACCTGTTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCCCAGATGCCAAGTTGAGTCTGTCAGATAAAACCTGTTATTG  300

seq1  CTATCATTAGCCAAAGAGTAAATCCCTGATAGATGAGCATGCCATAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTAGCCAAAGAGTAAATCCCTGATAGATGAGCATGCCATAGGGT  350

seq1  GCCCCTTCAGTCATCTCTGGCTCAGCCCTGCCATTAATCTCAGGAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCAGTCATCTCTGGCTCAGCCCTGCCATTAATCTCAGGAAAGGC  400

seq1  TTTTTGTGTTCTTTCAGCCAGACTGAAACGCTGTGACCTTGGGCTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTTCTTTCAGCCAGACTGAAACGCTGTGACCTTGGGCTTTGGA  450

seq1  CACTGACATTGGACTAAGACTAGAGAATCGAAGATTCTTTCCTTTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATTGGACTAAGACTAGAGAATCGAAGATTCTTTCCTTTCCTCT  500

seq1  GACTTCTTACTGAAACAGCTGACGTGAACTGAATTACCTGGTGCGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTACTGAAACAGCTGACGTGAACTGAATTACCTGGTGCGGTATT  550

seq1  GCAAGTTTCTTGTTTTGAGATGAATACACACAAGCATTGCATACACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTCTTGTTTTGAGATGAATACACACAAGCATTGCATACACATGT  600

seq1  GCATGCACACACACACACACACACACACACACACACACACACACAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACACACACACACACACACACACACACACACACACACACAGAGAG  650

seq1  AGAGAGAGAGGGGGGGGGGCTAACTCACCCAAATTCTTATTTTCTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGGGGGGGGGCTAACTCACCCAAATTCTTATTTTCTTTTCT  700

seq1  TTTTTTTCTTTTTTTAAAAATATTTTTTATTATTACGTATTTTCCTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTTTAAAAATATTTTTTATTATTACGTATTTTCCTCAAT  750

seq1  TACATTTAGAATGCTATCCCAAAAGTCCCCCATACCTTCCCCCCACTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAGAATGCTATCCCAAAAGTCCCCCATACCTTCCCCCCACTTCC  800

seq1  CTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGC  850

seq1  ACATAAAGTTTGCGCTTCAGTTTCATGGACGAATAAGTACTGTATCGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTTTGCGCTTCAGTTTCATGGACGAATAAGTACTGTATCGAAC  900

seq1  AATGTTCTTTAATAACTGCTA-TTTTATTTACTTTTATGGGGCAATACAA  949
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AATGTTCTTTAATAACTGCTATTTTTATTTACTTTTATGGGGCAATAC-A  949

seq1  AACTGCAAACTAGGATAAAAATCTGTAGTCTCTCTATCCTAAACACAGGG  999
      |||||||||||| ||| |||||||||||||||||||||||||||||| ||
seq2  AACTGCAAACTA-GAT-AAAATCTGTAGTCTCTCTATCCTAAACACA-GG  996

seq1  GCAAGAGATTTTTGGCTGTGAGAGGAGAGTATGCAATCAGGTTTTCACTA  1049
      ||||||||||||| |||||||||||||||||||| |||| ||||||||| 
seq2  GCAAGAGATTTTT-GCTGTGAGAGGAGAGTATGC-ATCA-GTTTTCACT-  1042

seq1  ATATTCTCATACAAATCACAGATACTAGCATATTTTGGAATTCTAGATGT  1099
      ||||||||||||||  |||||||||||||||||||||  |||||||||||
seq2  ATATTCTCATACAATCCACAGATACTAGCATATTTTG--ATTCTAGATGT  1090

seq1  CTATAGAAAACTACCATTTTAGTATC-TACAAAAAGGTAATGTGGTCTAA  1148
      ||||||  ||||||    |||| ||| ||||||   || |||| ||||||
seq2  CTATAG--AACTAC---ATTAG-ATCTTACAAA---GT-ATGT-GTCTAA  1129

seq1  CACTTTAATACAATTTTTTTGAGAAGGATTTGGTCTCAGTACCCCTGGTG  1198
      | ||||| ||||   |||| ||||        | ||||||| ||||||||
seq2  C-CTTTATTACA---TTTTGGAGA-------TGCCTCAGTA-CCCTGGTG  1167


seq1: chr19_20296007_20296502
seq2: B6Ng01-291O20.g_69_564 (reverse)

seq1  ACACACACACACACACACACACACATGCACACACCAAACAGAAAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATGCACACACCAAACAGAAAAATAAA  50

seq1  GAATAAATAATAATAGATGGATAGATAGATAGATAGATAGATAGATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATAATAATAGATGGATAGATAGATAGATAGATAGATAGATAGAT  100

seq1  AGATAGATAGATAGATAGATAGATAAAGTAAAACCAATTAAATTTGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAAAGTAAAACCAATTAAATTTGCATC  150

seq1  CTGAATAATTTGAAGCAGAGCTAAGTCAGCTCTTAAGTTCTGGTGGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAATTTGAAGCAGAGCTAAGTCAGCTCTTAAGTTCTGGTGGCAGT  200

seq1  GCATGCCTTCAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTCAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGA  250

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  300

seq1  TACAGAGAAACCCTGTCTGGAAAAATGAAAACAAACAAACAAACAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCCTGTCTGGAAAAATGAAAACAAACAAACAAACAAAAAC  350

seq1  AAACAAACAAACAAACAAAGAAAAATGACCTTACTTTCCACTGCTCGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAGAAAAATGACCTTACTTTCCACTGCTCGATT  400

seq1  GTTGCTAACTTCCTATTCAGGTCCTCTTCAGCAGTGGGAGATATCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAACTTCCTATTCAGGTCCTCTTCAGCAGTGGGAGATATCTAGGA  450

seq1  ACTTGGAGAAAGTTTTTAGTTGACAATCATTAAACATCTGGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGAAAGTTTTTAGTTGACAATCATTAAACATCTGGAATTC  496


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