BAC Information

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BAC

Clone NameB6Ng01-291P20
Chromosome19 (Build37)7 (Build37)
Map Location 31,168,021 - 31,168,69858,262,636 - 58,262,840
singlet/doubletsingletsinglet
Overlap genePrkg1
Upstream geneUhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995, Cstf2t
Downstream gene8430431K14Rik, 1810073H04Rik, Asah2, EG668042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P20.bB6Ng01-291P20.g
ACCGA088740GA088741
length1,047205
definitionB6Ng01-291P20.b B6Ng01-291P20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,168,021 - 31,168,698)(58,262,636 - 58,262,840)
sequence
gaattcactggtcgtcccatgttccccatcatcctgaagaagctggtctg
ctagaaagatggaatggccttttgaagacacagttacaatgccaattagg
tggcaatagcttggagggctgggacagagttcttcagtatacatgctttg
aatcagcatcctatatatggtacagtttccccatagccaggatccatggg
tccaggaatcaagggttggaaaagaaaatagttccactcactattacttc
tagtgaccctctaggaaaatttttgcttcctgtccccacaactctaggtt
ctgctggtctagatgttttggttccagatggaggtggggagtgctcctac
caggagccacaacaaacattccattgaacttgaagctcctggtcattttg
ggcttctaatgcccttaaaccaacaggctaagaaaggaataacagtatta
ggaggggtgatagattaccatggggaaattggattacctctccacaatgg
cggtaagcaagattatgtccggcgtgcagatgatcccttagggcatctct
tagtactaccatgtcctgtgattaaagtcaatgggaaactacaacagcct
aatccaagcaggatgacaaaggatgaagacacataaggaatgaaggtatg
ggccaatcaccaggaaaagtgccaagacctgctgaggtgcttgctgacgg
tgaaagaaatacagagtgggtagtagaagaagtagttataaataccagct
aaggccacataaccagttgcagaaataaggattataaagtaatatgaatg
tcttattttgttaagaatacatttgtctttctttccaatttctttaacat
caattggtatttaagtttgagacactaaaagaaatgtttcccaaggggca
ttgctccattgtaaatttacaaatgggtttgcaattatgtgagggatagt
ttatatgatgttaggcatcttcatgacctttgttattggtttttcatgtg
gtacatggagatattatttgtgttcagaatgacaaggggtagattgt

tatgatgaaaagatgtacaagcttacacacaaaaacaaaacaaaaaactt
tatcatgtggaaacagaaagcaaggttcaaaggggtgaaccctaacttta
acccccaaacaaagcaaaacaaagaaatgcatcatggtttccatataaca
agagcagagcagtattatatggtagtggcagtagtgtgtgtgtgtgtggg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31168021_31168698
seq2: B6Ng01-291P20.b_409_1098

seq1  CACAACAAACATTCCATTGAACTGGAAGCTCAGACTTCCCCCTGGTCATT  50
      ||||||||||||||||||||||| ||||||          ||||||||||
seq2  CACAACAAACATTCCATTGAACTTGAAGCT----------CCTGGTCATT  40

seq1  TTGGGCTTCTAATGCCCTTAAACCAACAGGGTAAGAAAGGAATAACAGTG  100
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAGAAAGGAATAACAGTA  90

seq1  TTAGGAGGGGAGATAGATCCAGATTACCATGGGGAAGTTGGATTACCTCT  150
      |||||||||| |||      |||||||||||||||| |||||||||||||
seq2  TTAGGAGGGGTGAT------AGATTACCATGGGGAAATTGGATTACCTCT  134

seq1  CCACAATGGATGGAGGTAAGCAAGATTATGTCTGGAGTGCAAGAGATCCC  200
      |||||    |||| |||||||||||||||||| || |||||   ||||||
seq2  CCACA----ATGGCGGTAAGCAAGATTATGTCCGGCGTGCAGATGATCCC  180

seq1  TGAGAG--TGTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAA  248
      | || |  | ||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCATCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAA  230

seq1  ACTACAACAGCCTAATCCAAGCAGGATGACAAAGGACACAGACCCATCAG  298
      ||||||||||||||||||||||||||||||||||||   |||| ||| ||
seq2  ACTACAACAGCCTAATCCAAGCAGGATGACAAAGGATGAAGACACATAAG  280

seq1  GAATGAAGGTATGGGTCAATCCTCCAGGAAAAGAGCCACGACCTGCTGAG  348
      ||||||||||||||| |||| | |||||||||| |||| |||||||||||
seq2  GAATGAAGGTATGGGCCAAT-CACCAGGAAAAGTGCCAAGACCTGCTGAG  329

seq1  GTGCTGGCTGAAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAG  398
      ||||| ||||| |||||| |||||||||| ||||||||||| ||| ||||
seq2  GTGCTTGCTGACGGTGAAAGAAATACAGAGTGGGTAGTAGAAGAA-GTAG  378

seq1  TTATAAATACCAAAGAAGGCCACTTAACCAGTTGCAGAAACGAGGATTAT  448
      ||||||||||||   |||||||| ||||||||||||||||  ||||||||
seq2  TTATAAATACCAGCTAAGGCCACATAACCAGTTGCAGAAATAAGGATTAT  428

seq1  A---TAATATGAATGCTTCTGTCTTATTTTGCTAATGAATACATTTGCCT  495
      |   |||||||||      |||||||||||| ||| ||||||||||| ||
seq2  AAAGTAATATGAA------TGTCTTATTTTGTTAA-GAATACATTTGTCT  471

seq1  TTTCTTCCAATTTCTTTAACATCAATTGGTATTTAAGGT----ACACTAA  541
      ||  ||||||||||||||||||||||||||||||||| |    |||||||
seq2  TTCTTTCCAATTTCTTTAACATCAATTGGTATTTAAGTTTGAGACACTAA  521

seq1  AAG-AATG-TACCCAAGGGACATTGCCCCATTGTAAATTTACAAA-----  584
      ||| |||| | |||||||| |||||| ||||||||||||||||||     
seq2  AAGAAATGTTTCCCAAGGGGCATTGCTCCATTGTAAATTTACAAATGGGT  571

seq1  -TGCA-----------------TTATATCATGTTAGGCATATTCATGACC  616
       ||||                 |||||| ||||||||||| |||||||||
seq2  TTGCAATTATGTGAGGGATAGTTTATATGATGTTAGGCATCTTCATGACC  621

seq1  -TTATTATTG---TTTCATGTG---CATATGAGATATTATTTGTG-TCAA  658
       || ||||||   |||||||||   |||  ||||||||||||||| ||| 
seq2  TTTGTTATTGGTTTTTCATGTGGTACAT-GGAGATATTATTTGTGTTCAG  670

seq1  GTTGACAAGGGGTAGATTGT  678
        ||||||||||||||||||
seq2  AATGACAAGGGGTAGATTGT  690


seq1: chr7_58262636_58262840
seq2: B6Ng01-291P20.g_75_279

seq1  TATGATGAAAAGATGTACAAGCTTACACACAAAAACAAAACAAAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAAAAGATGTACAAGCTTACACACAAAAACAAAACAAAAAACTT  50

seq1  TATCATGTGGAAACAGAAAGCAAGGTTCAAAGGGGTGAACCCTAACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTGGAAACAGAAAGCAAGGTTCAAAGGGGTGAACCCTAACTTTA  100

seq1  ACCCCCAAACAAAGCAAAACAAAGAAATGCATCATGGTTTCCATATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAAACAAAGCAAAACAAAGAAATGCATCATGGTTTCCATATAACA  150

seq1  AGAGCAGAGCAGTATTATATGGTAGTGGCAGTAGTGTGTGTGTGTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGCAGTATTATATGGTAGTGGCAGTAGTGTGTGTGTGTGTGGG  200

seq1  GGGGG  205
      |||||
seq2  GGGGG  205


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