BAC Information

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BAC

Clone NameB6Ng01-292I08
Chromosome19 (Build37)
Map Location 45,923,686 - 45,924,831
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream geneLOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Downstream geneEG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292I08.bB6Ng01-292I08.g
ACCGA089139GA089140
length1,1331,174
definitionB6Ng01-292I08.b B6Ng01-292I08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatcccagcaaccacatggtggctcacaaccacccataatgag
atctgacgccctcttctggtacatcagaagtcagctacagtatataataa
taaataaatctttgggctggagcaagcagggactagcaaacagcggagtt
ttccggagagagtggggccaactggagtgagtgaggttgaccagagcaag
cagaggtcctaaaaattcaattcccaacaaccacgtgaaggctcacaacc
atctgtacagctacagtgtacttacatacataaaataaataaatctcaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagagaagaga
agagaagagaagagaagagaagagaagagaagagaagagaagagaagaga
agtaaggaaaacatgaaaaagccagtgcttgattcctacggcaaataagt
agaagagtcaggattttcccactactaaatgatctaacctaaggtcttgc
acatgctgggtggatgctttcccactgagattcatcgggatctctgtatt
ttgagacagagtctctttttttgtttttgtttttgtttttgggttttttg
agacagggtttctctgtgtagccttggctgtcctggaactcactttgtag
accaggctggcctcaaactcagaaatctgcctgcctctgcctcccaaatg
ctgggattaaaggcgtgcgccaccaagcccggcttcgagacagagtctcc
tttacttaggctggccttaaatccttcaacctcctgagtgctaggattat
aggtatgtgccacagtgctgagtgaggaatcaggattttaactggggact
tctttctctatatctaaagtccttggatttgggttttttgttttgggttt
tgtttcttttttcattatgtgttgttcatggaatagtgttattttaacta
ggcttctgggaaaaatagactcagtcttttggtgggtgagagaaatagca
ttcatatgacaaccccagaagcaaaatggaagacctttcctgatcatcac
agttgaaaaataagacttatgcctctttctgatgtggggactgacttcag
ctcttgagaacggtcagcatcaccctgtgttcc
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagaggcaatgcgcagagagatgtgcagagaggcagtgcgcag
agaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaata
caacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgc
tccagtagaatacttacaaattaaagagcttgccgagtcggtccgtaaat
acggaaccaatgctaattttaccttggtgcagttagacaggctcgccggc
atggcactaactcctgccgactggcaaacggttgtaaaagccgctctccc
tagtatgggcaaatatatggaatggagagctctttggcatgaaactgcac
aagcgcaggcccgagcaaacgcagctgctttgactccagagcagagagat
tggacttttgacttgttaacgggtcagggagcttattctgctgatcaaac
aaactaccattggggagcttatgcccagatttcttccacggctattaggg
cctggaaggcgctctcccgagcaggtgaaaccactggtcaattaacaaaa
gttgtccagggacctcagaatccttctcagattttgtggccagaatgaca
gaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctgat
agaacagctaatctatgagcaagccacaaaggagtgccgagcggccatag
ccccaagaaaagaacaaaggcttacaagactggctcatggtctgtcgaga
gcttgggggacctctcagcaatgcaggtttagcggctgccatccttcaat
cccaaaaccgctccatgggccagaaatatcagaggacatgtttttaactg
gcggaaagctgggcattttaagaaagattgccagagcttcagaataacag
ggaagggaactctccactcttgctctaaggttggccaggttatcattaga
gcttgaccagtgatcgcgcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45923686_45924831
seq2: B6Ng01-292I08.b_41_1173 (reverse)

seq1  GGAACACAGGGGTGACTGCCTGACGGTGCTC-AGAGCTTGGAAGCTCAGG  49
      |||||||| |||||| || ||||| || ||| ||||||  |||| |||| 
seq2  GGAACACA-GGGTGA-TG-CTGACCGTTCTCAAGAGCT--GAAG-TCAGT  44

seq1  CCCCACATTCAG-AAGAGGCAT-AGTCCTTATTTTCAACTGTGATGATCA  97
      ||||||| |||| ||||||||| |||| |  |||||||||||||||||||
seq2  CCCCACA-TCAGAAAGAGGCATAAGTCTTATTTTTCAACTGTGATGATCA  93

seq1  GGGAAAGGGTCTCCATTTTGCCTTCTGGGGTTTGGTCATATGGAATGCTA  147
       |||||||   ||||||||| |||||||||||  ||||||| ||||||||
seq2  -GGAAAGGTCTTCCATTTTG-CTTCTGGGGTT--GTCATAT-GAATGCTA  138

seq1  TTTCTCTTCACCACCAAAAGACCTGAGTCTTATTTTTCCCAGAAGGCCTA  197
      |||||||   ||||||||||| ||||||| |||||||||||||| |||||
seq2  TTTCTCTCACCCACCAAAAGA-CTGAGTC-TATTTTTCCCAGAA-GCCTA  185

seq1  GTTAAAATAACACTATTTCCATGAACAACACATAATGAAAAAAGAAACAA  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTAAAATAACACTA-TTCCATGAACAACACATAATGAAAAAAGAAACAA  234

seq1  AACCCAAAACAAAAAACCCAAATCCAAGGACTTTAGATATAGAGAAAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAACAAAAAACCCAAATCCAAGGACTTTAGATATAGAGAAAGAA  284

seq1  GTCCCCAGTTAAAATCCTGATTCCTCACTCAGCACTGTGGCACATACCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAGTTAAAATCCTGATTCCTCACTCAGCACTGTGGCACATACCTA  334

seq1  TAATCCTAGCACTCAGGAGGTTGAAGGATTTAAGGCCAGCCTAAGTAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAGCACTCAGGAGGTTGAAGGATTTAAGGCCAGCCTAAGTAAAG  384

seq1  GAGACTCTGTCTCGAAGCCGGGCTTGGTGGCGCACGCCTTTAATCCCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGTCTCGAAGCCGGGCTTGGTGGCGCACGCCTTTAATCCCAGC  434

seq1  ATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTC  484

seq1  TACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTC  534

seq1  AAAAAACCCAAAAACAAAAACAAAAACAAAAAAAGAGACTCTGTCTCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCAAAAACAAAAACAAAAACAAAAAAAGAGACTCTGTCTCAAA  584

seq1  ATACAGAGATCCCGATGAATCTCAGTGGGAAAGCATCCACCCAGCATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGATCCCGATGAATCTCAGTGGGAAAGCATCCACCCAGCATGTG  634

seq1  CAAGACCTTAGGTTAGATCATTTAGTAGTGGGAAAATCCTGACTCTTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTTAGGTTAGATCATTTAGTAGTGGGAAAATCCTGACTCTTCTA  684

seq1  CTTATTTGCCGTAGGAATCAAGCACTGGCTTTTTCATGTTTTCCTTACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGCCGTAGGAATCAAGCACTGGCTTTTTCATGTTTTCCTTACTT  734

seq1  CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT  784

seq1  CTCTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  834

seq1  CTGAGATTTATTTATTTTATGTATGTAAGTACACTGTAGCTGTACAGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTATTTATTTTATGTATGTAAGTACACTGTAGCTGTACAGATG  884

seq1  GTTGTGAGCCTTCACGTGGTTGTTGGGAATTGAATTTTTAGGACCTCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCTTCACGTGGTTGTTGGGAATTGAATTTTTAGGACCTCTGC  934

seq1  TTGCTCTGGTCAACCTCACTCACTCCAGTTGGCCCCACTCTCTCCGGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGGTCAACCTCACTCACTCCAGTTGGCCCCACTCTCTCCGGAAA  984

seq1  ACTCCGCTGTTTGCTAGTCCCTGCTTGCTCCAGCCCAAAGATTTATTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCTGTTTGCTAGTCCCTGCTTGCTCCAGCCCAAAGATTTATTTAT  1034

seq1  TATTATATACTGTAGCTGACTTCTGATGTACCAGAAGAGGGCGTCAGATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATACTGTAGCTGACTTCTGATGTACCAGAAGAGGGCGTCAGATC  1084

seq1  TCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTC  1133