BAC Information

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BAC

Clone NameB6Ng01-293L22
Chromosome19 (Build37)
Map Location 29,983,641 - 29,984,749
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a1, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293L22.bB6Ng01-293L22.g
ACCGA090050GA090051
length9761,123
definitionB6Ng01-293L22.b B6Ng01-293L22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagctcctcctgcaccatgcctgcctggataccgccatgctca
caccttgatgataatggactgaacctctgaacctgtaagccagccccaat
taaatgttgttgtttttttttttttaataagacttgccttggtcatggta
tctgttcacagcagtaaaaccctaactaagacacctatcaacaaatgggg
aacagagctaaacagagaattctcaactgaggaaacctgaatgactgaga
agcacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatc
aaaacgaccctgagattccaccttaaactagtcaggatggctaagattaa
aacctcaggtaacaacacatgttggagaggatgtggagaaagacgaatac
tcctccactgctggtgggattgcaagctggtacaaccactctggaaatca
gtattgtggttcctcagaaaactgggcatagtactacctgaggacctagc
tataccactcctgggcatatacccagaatatgctccaacatgcagtaaag
acacatgctccattatgttcatagcagtcatatttataatagccaaaagc
tagaaacaacacagatatccctcaacagaggaatagatacagaaaatgtg
gtatatttacacaatggaatactacttagctattaaaaacaatgacttca
tgaaattcacaggcaaatgtatggatctagaaaatatcatcctaagtgag
gtaactcagtcacaaaacacacacggtatatactcactgataagtggata
ttagacaaagagtgtggaatacccatgacacaactcatggaccacatgaa
gctcaaaaggaaggaagaccaagagtagatgtttcagtcctacttagaag
gaggaacaaaataatcaaagggaagtagagcatgagaggaacttgggagg
aagaagaggaatggggggaggggaaa
gaattcttctaaatcactctcataggagctattactatggagttagaaat
ctttgaggaagacatgctatcttggttttcatgttgtttttgtttctttg
tggggacaggaacatctggagttagtttgatggttgaagtttcttacttt
caaatattttactttgacttttaaattcaagacacattttccagtggtgg
catctatgatattcaggagagaaccaaatgattgtagagttgtagtatct
tttgcctctatagtactgatatttatggtcaagggctctatcccaagact
tcctctgagggtcaagtcttgtcttgtgtcagctcaagcctccttcctgt
gtctgcagctttttctagttgtggcactcagcatgaacctgtgggcccta
cccagagtaagatcccagccccaccctgagctcacgattcagctggagca
gttgcagcctgtggaacttcctccaggtcagacacagctccacctttgcc
cccttgcccgggttccactgatgctgcggatgtggaaattcccttgtgcc
tctggtctaacccagagtcatgtatggtctccacctcaggtctccatctt
ctaccaaaacctttgttttcatacagactctcattatataaccttcagtg
ccttagaatgtgacgtgtcaaaaatgctacccttgaatttgcagtggtct
tgctgcctctgcctcatggatgctgggattacaggcatctatggctgtat
ttcaaattttggttctattttaaatttttttttgagtaacccccattctg
ttttccgtagtatactcatttatacttccacagagagtttacaaatgatt
caccattttgacagctggtagaaatttacatagtgcagccactgtggaaa
tcatcctggaagtccaccaaaaagattaaacaagtctcccatagacagca
ggaactgcattccctaagtagacagtggagaaaaagttaaaaacatatat
ccattaaaaattaacacagaatatatattatggggagtattttgttaaca
ccactcaataaagtgaagaaggggtgaatttggcaaggttccagtggact
agacctattaattgaacatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29983641_29984749
seq2: B6Ng01-293L22.g_64_1186 (reverse)

seq1  TTACATTGTCAAATAATA-GTCTAGT-CAATGGA--CTTTC--AAATCAC  44
      ||||||  |||| ||||| ||||||| || ||||  ||| |  || ||||
seq2  TTACATGTTCAATTAATAGGTCTAGTCCACTGGAACCTTGCCAAATTCAC  50

seq1  CCCTTCTTC-CATTA-TGAGTGGTGTTA--CAAATACT-CCCATATATAT  89
      ||||||||| | ||| ||||||||||||   ||||||| |||||| ||||
seq2  CCCTTCTTCACTTTATTGAGTGGTGTTAACAAAATACTCCCCATA-ATAT  99

seq1  AT-TTTTGTGTTTAATTTTTTAATGGATATATGTTTTTA--CTTTTCTCC  136
      || || ||||||  | |||||||||||||||||||||||   ||||||||
seq2  ATATTCTGTGTT--AATTTTTAATGGATATATGTTTTTAACTTTTTCTCC  147

seq1  ACTGTCTACTTA-GGAATGCAGTTCCTGCTGTCTATGGGAGACTTGTTTA  185
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTACTTAGGGAATGCAGTTCCTGCTGTCTATGGGAGACTTGTTTA  197

seq1  ATC-TTTTGGTGGACTTCCAGGATGATTTCCACAGTGGCTGCACTATGTA  234
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGGTGGACTTCCAGGATGATTTCCACAGTGGCTGCACTATGTA  247

seq1  AATTTCTACCAGCTGTCAAAATGGTGAATCATTTGTAAACTCTCTGTGGA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTACCAGCTGTCAAAATGGTGAATCATTTGTAAACTCTCTGTGGA  297

seq1  AGTATAAATGAGTATACTACGGAAAACAGAATGGGGGTTACTC-AAAAAA  333
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTATAAATGAGTATACTACGGAAAACAGAATGGGGGTTACTCAAAAAAA  347

seq1  AATTTAAAATAGAACCAAAATTTGAAATACAGCCATAGATGCCTGTAATC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATAGAACCAAAATTTGAAATACAGCCATAGATGCCTGTAATC  397

seq1  CCAGCATCCATGAGGCAGAGGCAGCAAGACCACTGCAAATTCAAGGGTAG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCATGAGGCAGAGGCAGCAAGACCACTGCAAATTCAAGGGTAG  447

seq1  CATTTTTGACACGTCACATTCTAAGGCACTGAAGGTTATATAATGAGAGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGACACGTCACATTCTAAGGCACTGAAGGTTATATAATGAGAGT  497

seq1  CTGTATGAAAACAAAGGTTTTGGTAGAAGATGGAGACCTGAGGTGGAGAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAAAACAAAGGTTTTGGTAGAAGATGGAGACCTGAGGTGGAGAC  547

seq1  CATACATGACTCTGGGTTAGACCAGAGGCACAAGGGAATTTCCACATCCG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGACTCTGGGTTAGACCAGAGGCACAAGGGAATTTCCACATCCG  597

seq1  CAGCATCAGTGGAACCCGGGCAAGGGGGCAAAGGTGGAGCTGTGTCTGAC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAGTGGAACCCGGGCAAGGGGGCAAAGGTGGAGCTGTGTCTGAC  647

seq1  CTGGAGGAAGTTCCACAGGCTGCAACTGCTCCAGCTGAATCGTGAGCTCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAAGTTCCACAGGCTGCAACTGCTCCAGCTGAATCGTGAGCTCA  697

seq1  GGGTGGGGCTGGGATCTTACTCTGGGTAGGGCCCACAGGTTCATGCTGAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCTGGGATCTTACTCTGGGTAGGGCCCACAGGTTCATGCTGAG  747

seq1  TGCCACAACTAGAAAAAGCTGCAGACACAGGAAGGAGGCTTGAGCTGACA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACTAGAAAAAGCTGCAGACACAGGAAGGAGGCTTGAGCTGACA  797

seq1  CAAGACAAGACTTGACCCTCAGAGGAAGTCTTGGGATAGAGCCCTTGACC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAAGACTTGACCCTCAGAGGAAGTCTTGGGATAGAGCCCTTGACC  847

seq1  ATAAATATCAGTACTATAGAGGCAAAAGATACTACAACTCTACAATCATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCAGTACTATAGAGGCAAAAGATACTACAACTCTACAATCATT  897

seq1  TGGTTCTCTCCTGAATATCATAGATGCCACCACTGGAAAATGTGTCTTGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTCCTGAATATCATAGATGCCACCACTGGAAAATGTGTCTTGA  947

seq1  ATTTAAAAGTCAAAGTAAAATATTTGAAAGTAAGAAACTTCAACCATCAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGTCAAAGTAAAATATTTGAAAGTAAGAAACTTCAACCATCAA  997

seq1  ACTAACTCCAGATGTTCCTGTCCCCACAAAGAAACAAAAACAACATGAAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCCAGATGTTCCTGTCCCCACAAAGAAACAAAAACAACATGAAA  1047

seq1  ACCAAGATAGCATGTCTTCCTCAAAGATTTCTAACTCCATAGTAATAGCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATAGCATGTCTTCCTCAAAGATTTCTAACTCCATAGTAATAGCT  1097

seq1  CCTATGAGAGTGATTTAGAAGAATTC  1109
      ||||||||||||||||||||||||||
seq2  CCTATGAGAGTGATTTAGAAGAATTC  1123