BAC Information

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BAC

Clone NameB6Ng01-294F14
Chromosome19 (Build37)
Map Location 15,845,092 - 16,034,121
singlet/doubletdoublet
Overlap genePsat1, LOC100041424, Cep78
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneLOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294F14.bB6Ng01-294F14.g
ACCGA090499GA090500
length1,0801,134
definitionB6Ng01-294F14.b B6Ng01-294F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,845,092 - 15,846,172)(16,033,008 - 16,034,121)
sequence
gaattcacaaagtcaagtgcaaataggaacaacaagctgaagagactcgg
gcacatcatgaagcccctctaaggtcaaccactttgaggacatagggcat
tgcgaaggacagtgaataaacagccagctgctgcctgcagttccctcctt
caagctacaagagttttccattcacagccgttcacaggcagcatcccagg
ggacagcctgatgaggcttaccccgtcacttgccttcctccccaccagct
ttcctcgcttgaaagtttagcatccccctaaatccacacttgctgatgta
catctgaattttaataaagaatatatgtctgacagggccactgctgcctc
tggccttggtgaggacagtctatcatctccttatagaacagccatgatgg
agacaagagaaacagcacagaaaacaaatgcagaggatcttggtcagcat
ttctcaacctgtgggtcacgtccctttggcaaacctctacctggaaaaat
atttacattacaattcacaacagtagcaacattacagttatgaaatagta
acaaaaataattttatgtttggaaggtgtcaccataaaaattaaagatca
caacaataggagagttgagaaccagtgatctagatataagaaaacaagac
aaacaaataggccaatgctgaataaagtagttaatcatgtatggcatata
atcaagacatttccatggtttggtcccccgaaggctcatgttttagaagc
ttggttgccagtacactgaggttcaaagatgaagctgaatgcaaagtaac
taggtcataggggacactagcctcaaaagggattagtgtggttctggtgg
gactctagttagttcctaagaggtttgatttcagcaagcaagactaggtc
ctgcccatctcacatgctttggccagaatgtcacaccaggatgctacctg
ccatcatgtgatacagctgggaccacaaaatattacagaggtagaaagat
gcacttagattttcagatttgaaaacacaaaaagctaagtaaaccttctt
ttcattataaggtactgggtctcaataata
gaattccacggttaatacacctatacaagaacagaaggcacttgaagatg
aaactctgcatccgaaacagactgccaccggacaaatgcaggatatccga
gtgagtgggcctctcagaccttggttcaagccctgagcaaggagctcccc
aagtcggagaaaggaatggtggtctatctctagaagagctaagtttgtac
ctgtttccagaagcagcatcgttgtcagtaagaaaatggggctagacatg
atgatgcaaaccttgatcccagtgcctgggaggcagggacaggcaggtct
ctctgagcttgaggctaacctggtctgcatagtgaattccagaccagtca
aaactacatagtgagaccttacctacaaaaaaagaaaaaaaaaaaaaagg
aagttcttttttttttttttttttttttgataatttatacttgaaataag
caatcttcagtgaggaaagaaagagtaaagagataatcagaaattaaatt
tttgtaaactgctattgtatgcagtcagcttacaatgaagggacactaat
gaaggtccaagtactagtgcagagaacgcttgagaccagtaatctggaca
gactagcatgcttacagcctccacttgtggatggaggaggttggctggca
caggaaccctctctccccccccccacccgaatattttttcttctgccccc
accaagacccagcagccagtcttaagacttgtctgaggagctgctggctt
tgagagctcagtcatgccacaccttggatacttcacatacacagagaggc
taggaattaggttttcttagaaatagcttagaaatagttttgtttttttt
aatggtggaaaattggagctaatatagagaacaaaaaaatgctaaaaata
taacagctaactttgggcataatataataattttgagttgccatccacat
tggcatcgtataattaagaaaaatgtatgactatagaatccttctgagtg
ggtggaactgacttagtagatatcacagttcccaggctctggagagatgg
ccctgactgtgtggagagagcttaatgctcttgtaagatggaatagaagt
ccttagctcccaaggttgggggggctcgcaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15845092_15846172
seq2: B6Ng01-294F14.b_48_1127

seq1  GAATTCACAAAGTCAAGTGCAAATAGGAACAACAAGCTGAAGAGACTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGTCAAGTGCAAATAGGAACAACAAGCTGAAGAGACTCGG  50

seq1  GCACATCATGAAGCCCCTCTAAGGTCAACCACTTTGAGGACATAGGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCATGAAGCCCCTCTAAGGTCAACCACTTTGAGGACATAGGGCAT  100

seq1  TGCGAAGGACAGTGAATAAACAGCCAGCTGCTGCCTGCAGTTCCCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGGACAGTGAATAAACAGCCAGCTGCTGCCTGCAGTTCCCTCCTT  150

seq1  CAAGCTACAAGAGTTTTCCATTCACAGCCGTTCACAGGCAGCATCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACAAGAGTTTTCCATTCACAGCCGTTCACAGGCAGCATCCCAGG  200

seq1  GGACAGCCTGATGAGGCTTACCCCGTCACTTGCCTTCCTCCCCACCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTGATGAGGCTTACCCCGTCACTTGCCTTCCTCCCCACCAGCT  250

seq1  TTCCTCGCTTGAAAGTTTAGCATCCCCCTAAATCCACACTTGCTGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGCTTGAAAGTTTAGCATCCCCCTAAATCCACACTTGCTGATGTA  300

seq1  CATCTGAATTTTAATAAAGAATATATGTCTGACAGGGCCACTGCTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAATTTTAATAAAGAATATATGTCTGACAGGGCCACTGCTGCCTC  350

seq1  TGGCCTTGGTGAGGACAGTCTATCATCTCCTTATAGAACAGCCATGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGGTGAGGACAGTCTATCATCTCCTTATAGAACAGCCATGATGG  400

seq1  AGACAAGAGAAACAGCACAGAAAACAAATGCAGAGGATCTTGGTCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAGAAACAGCACAGAAAACAAATGCAGAGGATCTTGGTCAGCAT  450

seq1  TTCTCAACCTGTGGGTCACGTCCCTTTGGCAAACCTCTACCTGGAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTGTGGGTCACGTCCCTTTGGCAAACCTCTACCTGGAAAAAT  500

seq1  ATTTACATTACAATTCACAACAGTAGCAACATTACAGTTATGAAATAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTACAATTCACAACAGTAGCAACATTACAGTTATGAAATAGTA  550

seq1  ACAAAAATAATTTTATGTTTGGAAGGTGTCACCATAAAAATTAAAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAATTTTATGTTTGGAAGGTGTCACCATAAAAATTAAAGATCA  600

seq1  CAACAATAGGAGAGTTGAGAACCAGTGATCTAGATATAAGAAAACAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAGGAGAGTTGAGAACCAGTGATCTAGATATAAGAAAACAAGAC  650

seq1  AAACAAATAGGCCAATGCTGAATAAAGTAGTTAATCATGTATGGCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAGGCCAATGCTGAATAAAGTAGTTAATCATGTATGGCATATA  700

seq1  ATCAAGACATTTCCATGGTTTGGTCCCCCGAAGGCTCATGTTTTAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACATTTCCATGGTTTGGTCCCCCGAAGGCTCATGTTTTAGAAGC  750

seq1  TTGGTTGCCAGTACACTGAGGTTCAAAGATGAAGCTGAATGCAAAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCCAGTACACTGAGGTTCAAAGATGAAGCTGAATGCAAAGTAAC  800

seq1  TAGGTCATAGGGGACACTAGCCTCAAAAGGGATTAGTGTGGTTCTGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATAGGGGACACTAGCCTCAAAAGGGATTAGTGTGGTTCTGGTGG  850

seq1  GACTCTAGTTAGTTCCTAAGAGGTTTGATTTCAGCAAGCAAGACTAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGTTAGTTCCTAAGAGGTTTGATTTCAGCAAGCAAGACTAGGTC  900

seq1  CTGCCCATCTCACATGCTTTGGCCAGAATGTCACACCAGGATGCTACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCTCACATGCTTTGGCCAGAATGTCACACCAGGATGCTACCTG  950

seq1  CCATCATGTGATACAGCTGGGAACACAAAATATTACAGAGGTAGAAAGAT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATCATGTGATACAGCTGGGACCACAAAATATTACAGAGGTAGAAAGAT  1000

seq1  GCAACTTAGATTTTCAGATTTG-AAACACAAAAAGCTAAGTAAACCTTCT  1049
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GC-ACTTAGATTTTCAGATTTGAAAACACAAAAAGCTAAGTAAACCTTCT  1049

seq1  TTTCATTATAAAGTACCTGGTCTCAAATAATA  1081
      ||||||||||| ||||  |||||| |||||||
seq2  TTTCATTATAAGGTACTGGGTCTC-AATAATA  1080

seq1: chr19_16033008_16034121
seq2: B6Ng01-294F14.g_66_1199 (reverse)

seq1  GTGGTTGCGAGCCACCC--AACATGGGAGCTAGGGAC-TCTATTCAATCC  47
      |||| |||||||| |||  | | ||||||||| |||| ||||||| ||| 
seq2  GTGG-TGCGAGCCCCCCCAACCTTGGGAGCTAAGGACTTCTATTCCATC-  48

seq1  TTTACAAGAGC-TATAGCTCTCTC--AACAGTCA-GGCCATCTCTCC--A  91
       |||||||||| |  |||||||||   ||||||| ||||||||||||  |
seq2  -TTACAAGAGCATTAAGCTCTCTCCACACAGTCAGGGCCATCTCTCCAGA  97

seq1  GCCTTGGAACTGTGATCT-TACTAAGTCAGTTC--ACCACTCAG-AGGAT  137
      |||| ||||||||||| | ||||||||||||||   |||||||| |||||
seq2  GCCTGGGAACTGTGATATCTACTAAGTCAGTTCCACCCACTCAGAAGGAT  147

seq1  TCTATAGTCATACA-TTTTCTAAATTATACGATGCC-ATGTGATTGGCAA  185
      |||||||||||||| |||||| |||||||||||||| |||||  ||||||
seq2  TCTATAGTCATACATTTTTCTTAATTATACGATGCCAATGTGGATGGCAA  197

seq1  CTCAAAATTA-TATA-TATGCCCAAAGTTAGCTG-TATATTTTTAGCA-T  231
      |||||||||| |||| |||||||||||||||||| ||||||||||||| |
seq2  CTCAAAATTATTATATTATGCCCAAAGTTAGCTGTTATATTTTTAGCATT  247

seq1  TTTTTGTTCTCTATAATTAGCTTCAATTTTCCA-CATTAAAAAAAACAAA  280
      |||||||||||||| ||||||| |||||||||| ||||||||||||||||
seq2  TTTTTGTTCTCTAT-ATTAGCTCCAATTTTCCACCATTAAAAAAAACAAA  296

seq1  ACTATTTCTAAGCTATTTCTAAG-AAACCTAATTCCTAGCCTCTCTGTGT  329
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTATTTCTAAGCTATTTCTAAGAAAACCTAATTCCTAGCCTCTCTGTGT  346

seq1  ATGTGAAGTATCCAAGGTGTGGCATGACTGAGCTCTC-AAGCCAGCAGCT  378
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTGAAGTATCCAAGGTGTGGCATGACTGAGCTCTCAAAGCCAGCAGCT  396

seq1  CCTCAGACAAGTCTT-AGACTGGCTGCTGGGTCTTGGT-GGGGCAGAAGA  426
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  CCTCAGACAAGTCTTAAGACTGGCTGCTGGGTCTTGGTGGGGGCAGAAGA  446

seq1  AAAAATATTCGGGTGGGGGGGGGGAGAGAGGGTTCCTGTGCCAGCCAACC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTCGGGTGGGGGGGGGGAGAGAGGGTTCCTGTGCCAGCCAACC  496

seq1  TCCTCCATCCACAAGTGGAGGCTGTAAGCATGCTAGTCTGTCCAGATTAC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATCCACAAGTGGAGGCTGTAAGCATGCTAGTCTGTCCAGATTAC  546

seq1  TGGTCTCAAGCGTTCTCTGCACTAGTACTTGGACCTTCATTAGTGTCCCT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAAGCGTTCTCTGCACTAGTACTTGGACCTTCATTAGTGTCCCT  596

seq1  TCATTGTAAGCTGACTGCATACAATAGCAGTTTACAAAAATTTAATTTCT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTAAGCTGACTGCATACAATAGCAGTTTACAAAAATTTAATTTCT  646

seq1  GATTATCTCTTTACTCTTTCTTTCCTCACTGAAGATTGCTTATTTCAAGT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTCTTTACTCTTTCTTTCCTCACTGAAGATTGCTTATTTCAAGT  696

seq1  ATAAATTATCAAAAAAAAAAAAAAAAAAAAAAGAACTTCCTTTTTTTTTT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATCAAAAAAAAAAAAAAAAAAAAAAGAACTTCCTTTTTTTTTT  746

seq1  TTTTCTTTTTTTGTAGGTAAGGTCTCACTATGTAGTTTTGACTGGTCTGG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTTGTAGGTAAGGTCTCACTATGTAGTTTTGACTGGTCTGG  796

seq1  AATTCACTATGCAGACCAGGTTAGCCTCAAGCTCAGAGAGACCTGCCTGT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTATGCAGACCAGGTTAGCCTCAAGCTCAGAGAGACCTGCCTGT  846

seq1  CCCTGCCTCCCAGGCACTGGGATCAAGGTTTGCATCATCATGTCTAGCCC  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCCCAGGCACTGGGATCAAGGTTTGCATCATCATGTCTAGCCC  896

seq1  CATTTTCTTACTGACAACGATGCTGCTTCTGGAAACAGGTACAAACTTAG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTACTGACAACGATGCTGCTTCTGGAAACAGGTACAAACTTAG  946

seq1  CTCTTCTAGAGATAGACCACCATTCCTTTCTCCGACTTGGGGAGCTCCTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAGAGATAGACCACCATTCCTTTCTCCGACTTGGGGAGCTCCTT  996

seq1  GCTCAGGGCTTGAACCAAGGTCTGAGAGGCCCACTCACTCGGATATCCTG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGCTTGAACCAAGGTCTGAGAGGCCCACTCACTCGGATATCCTG  1046

seq1  CATTTGTCCGGTGGCAGTCTGTTTCGGATGCAGAGTTTCATCTTCAAGTG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCCGGTGGCAGTCTGTTTCGGATGCAGAGTTTCATCTTCAAGTG  1096

seq1  CCTTCTGTTCTTGTATAGGTGTATTAACCGTGGAATTC  1114
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTCTTGTATAGGTGTATTAACCGTGGAATTC  1134