BAC Information

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BAC

Clone NameB6Ng01-294H04
Chromosome19 (Build37)
Map Location 35,675,532 - 35,779,807
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H04.bB6Ng01-294H04.g
ACCGA090570GA090571
length1,0751,169
definitionB6Ng01-294H04.b B6Ng01-294H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,778,717 - 35,779,807)(35,675,532 - 35,676,379)
sequence
gaattctactatccatttttcctctgtctctgctgcttttctttaaaagt
tcttttcttttttttttttttttttttttttttttttttttttttttctt
ttaaaaaagtcaaggtaggttttatacatcaggttcctcaaaggtaaggg
gatactctgcaatccttctaagggcacaggttttggagaagtgtgacact
actttttctggctggtgtctgattgccccaacagttaactttggaacacc
tgtgtcccaaatacaaccagcccatgctgaaatcacaaacacaacaggct
tctgagttgtctatatttatgtcaagaattttgctcagccattttccctt
tcctggtatttcttaaaaagtgaaaggttaagtaggtccaaataaaataa
agctaaaacaaaactggaaattataatgaagtcttccgcatcctgctctc
actctaccccgaaggaagtacttcgtaaatgttcaaaatattggagagaa
caaagatctgcaaatgaaattctcggatctctgcaggcaagaatcccaag
ggaaagacggttgggaagatgttagagggcaagaccactggccacattag
ataagcgatgagtcttacattttcatccttcacccagcacagtagtcaat
gggaaaaggctcagttacttctccccaagcagctagatagaccactgagc
tacggccctctgaaggctccctagagctgctaactgtaatggaggagata
gtgcccttgctgaagagcaactgtctctgaattaatcacagagctcacac
aaatcttaatttgctgttttttaacgtttgctacaatttgttccataatg
gcactacctctgccattgaaacaggtctaaaagttgcaggacaaaagaca
gcagaggaaagccttgtgaccaaatcctgccttgattttagacagtagca
taaagatatttcctgattacattctatgtccaaagtgccccagggctttt
gaactcatttgtcatatcacagatggatgtctcatgattatcgctgagag
agggcaacttactattaggtgtgaa
gaattcctagtaatgggggtaaggagttccaactggccatctctcttagc
cagcaagtcatccagtagagggataaagttgcattcagttgagttgttgg
ccagcagagatccatggaaatccccaaacaaacaggctgtagcttagaca
aagggttgtcctcaacaaactgacagtgagaccccattgctgacaaaaac
atccacacagctcgttgaacacagagaagatgagctgatgcctgtatgga
gccctcccatttgcattctagtgtctttggtgtggaaagataccccacgg
gctatcattatgtagacaccaacccagccacaaaactttggtctacaatc
tatcctgtctgcaaaatatgctagggaaatagtggcatggaacttaaggg
aatagccaatcaatgtctgatttgacttaagcccactacaggagactgaa
catgtatctgaaattgcttgggtaccaagaaccaaagagtagataacata
gagatagcataaaaacatactgatctaaaaagagaatcaatgaaacgatt
cctattggtattcttctatacttagaaattagtgtcttatctagctatca
ccagagaagtttcctctatcagcaaacaggaataggtgcagagacccaca
gtcagacatcatgcagacagagagggtctaccttagaggactccatccaa
ttcctcccttctgaactcaggaaatcctccagaagaggagacagattata
agagccagagggaatggaagtcaccaggagaacaagtgcctctgaatcaa
ctaaacaaggcacatataaaggaaaaagtagttcagttgaaaactctttc
cataatttcactgatacagcaattattgtggatttcactaagaattctga
tataatcaaattacatgaatagggaagaggagacatgaataagagttctt
cacaaatggaagataaaacatgttatctatttacatcagagaagaagcca
tacatttttaaagggcaggaaatagagtataatcatataaactctgcatg
atgagttgaaaaatcagtggaggagaagtgagggatgagtaaagaaagca
gctgggaacaaaagatcaaaaatattccaaagttctaactctgccagaaa
ccattttacttggattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35778717_35779807
seq2: B6Ng01-294H04.b_45_1119 (reverse)

seq1  TTCACAACCTAATTAGTAAGTGTGCCCCTCTCTTCCAAGCGATAATCATG  50
      ||||| |||||| |||||||| || ||||||||    |||||||||||||
seq2  TTCAC-ACCTAA-TAGTAAGT-TG-CCCTCTCT---CAGCGATAATCATG  43

seq1  AGAACAATTCATCTGTGGATTATGAACAAAATGATGTCAAAAGGCCTTGG  100
      |||   || ||||||||   |||||   ||||||  |||||| ||| |||
seq2  AGA--CATCCATCTGTG--ATATGA--CAAATGAGTTCAAAA-GCCCTGG  86

seq1  GGCACTTTTGGGACATAGAATGTAATCAGGAAATATCTTTTATGCTTACT  150
      ||||||||  ||||||||||||||||||||||||||| ||||||| ||| 
seq2  GGCACTTT--GGACATAGAATGTAATCAGGAAATATC-TTTATGC-TAC-  131

seq1  TGTCTAAAATCAAGGCAGGATTTGTTCACAAGGCTTTCCTCTGCTGTCTT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTCTAAAATCAAGGCAGGATTTGGTCACAAGGCTTTCCTCTGCTGTCTT  181

seq1  TTGTCCTGCAACTTTTAGACCTGTTTCAATGGCAGAGGTAGTGCCATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGCAACTTTTAGACCTGTTTCAATGGCAGAGGTAGTGCCATTAT  231

seq1  GGAACAAATTGTAGCAAACGTT-AAAAACAGC-AATTAAGATTTGTGTGA  298
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  GGAACAAATTGTAGCAAACGTTAAAAAACAGCAAATTAAGATTTGTGTGA  281

seq1  GCTCTGTGATTAATTCAGAGACAGTTGCTCTTCAGCAAGGGCACTATCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGATTAATTCAGAGACAGTTGCTCTTCAGCAAGGGCACTATCTC  331

seq1  CTCCATTACAGTTAGCAGCTCTAGGGAGCCTTCAGAGGGCCGTAGCTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTACAGTTAGCAGCTCTAGGGAGCCTTCAGAGGGCCGTAGCTCAG  381

seq1  TGGTCTATCTAGCTGCTTGGGGAGAAGTAACTGAGCCTTTTCCCATTGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATCTAGCTGCTTGGGGAGAAGTAACTGAGCCTTTTCCCATTGAC  431

seq1  TACTGTGCTGGGTGAAGGATGAAAATGTAAGACTCATCGCTTATCTAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCTGGGTGAAGGATGAAAATGTAAGACTCATCGCTTATCTAATG  481

seq1  TGGCCAGTGGTCTTGCCCTCTAACATCTTCCCAACCGTCTTTCCCTTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTGGTCTTGCCCTCTAACATCTTCCCAACCGTCTTTCCCTTGGG  531

seq1  ATTCTTGCCTGCAGAGATCCGAGAATTTCATTTGCAGATCTTTGTTCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCCTGCAGAGATCCGAGAATTTCATTTGCAGATCTTTGTTCTCT  581

seq1  CCAATATTTTGAACATTTACGAAGTACTTCCTTCGGGGTAGAGTGAGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTTGAACATTTACGAAGTACTTCCTTCGGGGTAGAGTGAGAGC  631

seq1  AGGATGCGGAAGACTTCATTATAATCTCCAGTTTTGTCTTAGCTTTATTT  698
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  AGGATGCGGAAGACTTCATTATAATTTCCAGTTTTGTTTTAGCTTTATTT  681

seq1  TATTTGGACCTACTTAACCTTTCACTTTTTAAGAAATACCAGGAAAGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGACCTACTTAACCTTTCACTTTTTAAGAAATACCAGGAAAGGGA  731

seq1  AAATGGCTGAGCAAAATTCTTGACATAAATATAGACAACTCAGAAGCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGAGCAAAATTCTTGACATAAATATAGACAACTCAGAAGCCTG  781

seq1  TTGTGTTTGTGATCTCAGCATGGGCTGGTTGTATTTGGGACACAGGTGTT  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGTGATTTCAGCATGGGCTGGTTGTATTTGGGACACAGGTGTT  831

seq1  CCAAAGTTAACTGTTGGGGCAATCAGACACCAGCCAGAAATAGTAGTGTC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAAAGTTAACTGTTGGGGCAATCAGACACCAGCCAGAAAAAGTAGTGTC  881

seq1  ACACTTCTCCAAAACCTGTGCCCTTAGAAGGATTGCAGAGTATCGCCTTA  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACTTCTCCAAAACCTGTGCCCTTAGAAGGATTGCAGAGTATCCCCTTA  931

seq1  CCTCTGAGGAACCTGATGTATAAAACCTACCTTGACTTTTCTAAAAG-AA  997
      ||| |||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CCTTTGAGGAACCTGATGTATAAAACCTACCTTGACTTTTTTAAAAGAAA  981

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAACTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAACTTTT  1031

seq1  AAAGAAAAGCAGCAGAGACAGAGGAAAAATGGATAGTAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGCAGCAGAGACAGAGGAAAAATGGATAGTAGAATTC  1075

seq1: chr19_35675532_35676379
seq2: B6Ng01-294H04.g_389_1236

seq1  ACCCAGCCACAAAACTTTGGTCTACAATCTATCCTGTCTGCAAAATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCACAAAACTTTGGTCTACAATCTATCCTGTCTGCAAAATATGC  50

seq1  TAGGGAAATAGTGGCATGGAACTTAAGGGAATAGCCAATCAATGTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAATAGTGGCATGGAACTTAAGGGAATAGCCAATCAATGTCTGAT  100

seq1  TTGACTTAAGCCCACTACAGGAGACTGAACATGTATCTGAAATTGCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAAGCCCACTACAGGAGACTGAACATGTATCTGAAATTGCTTGG  150

seq1  GTACCAAGAACCAAAGAGTAGATAACATAGAGATAGCATAAAAACATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGAACCAAAGAGTAGATAACATAGAGATAGCATAAAAACATACT  200

seq1  GATCTAAAAAGAGAATCAATGAAACGATTCCTATTGGTATTCTTCTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAAAAGAGAATCAATGAAACGATTCCTATTGGTATTCTTCTATAC  250

seq1  TTAGAAATTAGTGTCTTATCTAGCTATCACCAGAGAAGTTTCCTCTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTAGTGTCTTATCTAGCTATCACCAGAGAAGTTTCCTCTATCA  300

seq1  GCAAACAGGAATAGGTGCAGAGACCCACAGTCAGACATCATGCAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGAATAGGTGCAGAGACCCACAGTCAGACATCATGCAGACAGA  350

seq1  GAGGGTCTACCTTAGAGGACTCCATCCAATTCCTCCCTTCTGAACTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTACCTTAGAGGACTCCATCCAATTCCTCCCTTCTGAACTCAGG  400

seq1  AAATCCTCCAGAAGAGGAGACAGATTATAAGAGCCAGAGGGAATGGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCCAGAAGAGGAGACAGATTATAAGAGCCAGAGGGAATGGAAGT  450

seq1  CACCAGGAGAACAAGTGCCTCTGAATCAACTAAACAAGGCACATAT-AAG  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACCAGGAGAACAAGTGCCTCTGAATCAACTAAACAAGGCACATATAAAG  500

seq1  GAAAAAGTAGTTCAGTTGAAAACTCTTTCCATAATTTCACTGATACAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAGTTCAGTTGAAAACTCTTTCCATAATTTCACTGATACAGCA  550

seq1  ATTATTGTGGATTTCACTAAGAATTCTGATATAATCAAATTACATGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTGGATTTCACTAAGAATTCTGATATAATCAAATTACATGAATA  600

seq1  GGGAAGAGGAGACATGAATAAGAGTTCTTCACAAATGGAAGAT-AAACAT  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGAAGAGGAGACATGAATAAGAGTTCTTCACAAATGGAAGATAAAACAT  650

seq1  GTTATCTATTTACATCAAGAG-AGAAGCCATACATTTTTAAAGGGCAGGA  697
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  GTTATCTATTTACATC-AGAGAAGAAGCCATACATTTTTAAAGGGCAGGA  699

seq1  AATAGAGTAT-ATCATATAAACTCTGCATGATGGAGTTGAAAAATCAGTG  746
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AATAGAGTATAATCATATAAACTCTGCATGAT-GAGTTGAAAAATCAGTG  748

seq1  --AGAGAAGTGAAGGGATGAGGTAAAGAAAGGCAGCTGGGGAACAAAAAG  794
         |||||||| |||||||| ||||||||| |||||| |||||| |||||
seq2  GAGGAGAAGTG-AGGGATGA-GTAAAGAAA-GCAGCT-GGGAAC-AAAAG  793

seq1  ATCAAAAATAT--CAAGTTTCCTTACTCTTGCCAGAAACCA-TTTACATG  841
      |||||||||||  |||  || || |||| |||||||||||| ||||| ||
seq2  ATCAAAAATATTCCAAAGTT-CTAACTC-TGCCAGAAACCATTTTACTTG  841

seq1  GATTGTT  848
      |||||||
seq2  GATTGTT  848