BAC Information

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BAC

Clone NameB6Ng01-294J23
Chromosome19 (Build37)
Map Location 7,217,451 - 7,398,785
singlet/doubletdoublet
Overlap geneD930010J01Rik, Otub1, Cox8a, Nat11, Rcor2, Mark2
Upstream geneLOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, Flrt1
Downstream geneAI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J23.bB6Ng01-294J23.g
ACCGA090704GA090705
length1,050280
definitionB6Ng01-294J23.b B6Ng01-294J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,217,451 - 7,218,511)(7,398,506 - 7,398,785)
sequence
gaattcactatgtagatcaggctagcctcaaacttgtcctcatcctcctg
ctatggagtactgggattatgggtctgcaccctcacattatggctggagg
agggtattttaaaatgcagattctgggacctggaaggtgtctcggtgggt
aggaaagtctgatggcctgagttcaaagccaggaaccaccagaaggagag
agcaacccctgtgtatgtctagacacatatacaaataattgaaacttaaa
aataaaatgcaaaaagcaaacaaatcaagtaaaatgcagattttgagtcc
cagctacagataatgtggcaaactgaagcagtgcccagagccctgcttgg
tctgtttttgtttctagacagggtctcactgcagctcaagctggcatgga
acttagtgtgtgtggcctgagggggtacactgaacttctgaccttcctgc
ctccagtccttagtgctggggttatagtatgcaccgcactgtcatgccaa
gtatatgtggtgctgggtatgaaacccaaggctttggacatgctaggcta
atgccctaccaactcggccaagtctctctgcattttgggtcaggctttgg
tgattccttacagagaggttgagggcactgtgggtcaccggtgagtgact
tggaaagcccatgcttggcgcaagaaggaccactcctatccccaagcaaa
tgcccctcaactacaggctaggggctggagccccagtggtggcacggcgt
gaaggaagggcagacagcggtaaagtcagcgcgggagcatccatctgccc
tgacagccagcaattacaccgcgtgatcgccagattactccaaatgcatt
tattacaggggttagaagcgggggacttatttactggcaaatccatactc
attacagactcagcctagcctagactgaaaacagctcaactgaaacaaat
attaccaagtccttccagcgcgagctctcaggtggtgtgtgtagggggac
accaggccatcatgaaacgaggaggcgtcgctggtggaggatgcccggtc

acctgtccgccattaaggcagataagttaaaggcaacacttttaatcaaa
tttcagttgttttggaaaacaagtttccctaaagagagtaggttgtgtaa
acatgtactggatttattgttattttgcacaaatgaataatacttgataa
gaaatgacctgtcttacctgcagaggtggcttgggcctgtggtcccagca
taggaagaggcttaggtagggggattgaagcagaggtttgtttttttttt
ttgatgttgttgttgttgttgttgttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7217451_7218511
seq2: B6Ng01-294J23.b_48_1097

seq1  GAATTCACTATGTAGATCAGGCTAGCCTCAAACTTGTCCTCATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTAGCCTCAAACTTGTCCTCATCCTCCTG  50

seq1  CTATGGAGTACTGGGATTATGGGTCTGCACCCTCACATTATGGCTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGTACTGGGATTATGGGTCTGCACCCTCACATTATGGCTGGAGG  100

seq1  AGGGTATTTTAAAATGCAGATTCTGGGACCTGGAAGGTGTCTCGGTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTTTAAAATGCAGATTCTGGGACCTGGAAGGTGTCTCGGTGGGT  150

seq1  AGGAAAGTCTGATGGCCTGAGTTCAAAGCCAGGAACCACCAGAAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCTGATGGCCTGAGTTCAAAGCCAGGAACCACCAGAAGGAGAG  200

seq1  AGCAACCCCTGTGTATGTCTAGACACATATACAAATAATTGAAACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCCTGTGTATGTCTAGACACATATACAAATAATTGAAACTTAAA  250

seq1  AATAAAATGCAAAAAGCAAACAAATCAAGTAAAATGCAGATTTTGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGCAAAAAGCAAACAAATCAAGTAAAATGCAGATTTTGAGTCC  300

seq1  CAGCTACAGATAATGTGGCAAACTGAAGCAGTGCCCAGAGCCCTGCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGATAATGTGGCAAACTGAAGCAGTGCCCAGAGCCCTGCTTGG  350

seq1  TCTGTTTTTGTTTCTAGACAGGGTCTCACTGCAGCTCAAGCTGGCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTGTTTCTAGACAGGGTCTCACTGCAGCTCAAGCTGGCATGGA  400

seq1  ACTTAGTGTGTGTGGCCTGAGGGGGTACACTGAACTTCTGACCTTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGTGTGTGGCCTGAGGGGGTACACTGAACTTCTGACCTTCCTGC  450

seq1  CTCCAGTCCTTAGTGCTGGGGTTATAGTATGCACCGCACTGTCATGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCTTAGTGCTGGGGTTATAGTATGCACCGCACTGTCATGCCAA  500

seq1  GTATATGTGGTGCTGGGTATGAAACCCAAGGCTTTGGACATGCTAGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTGGTGCTGGGTATGAAACCCAAGGCTTTGGACATGCTAGGCTA  550

seq1  ATGCCCTACCAACTCGGCCAAGTCTCTCTGCATTTTGGGTCAGGCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACCAACTCGGCCAAGTCTCTCTGCATTTTGGGTCAGGCTTTGG  600

seq1  TGATTCCTTACAGAGAGGTTGAGGGCACTGTGGGTCACCGGTGAGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTTACAGAGAGGTTGAGGGCACTGTGGGTCACCGGTGAGTGACT  650

seq1  TGGAAAGCCCATGCTTGGCGCAAGAAGGACCACTCCTATCCCCAAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCCCATGCTTGGCGCAAGAAGGACCACTCCTATCCCCAAGCAAA  700

seq1  TGCCCCTCAACTACAGGCTAGGGGCTGGAGCCCCAGTGGTGGCACGGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCAACTACAGGCTAGGGGCTGGAGCCCCAGTGGTGGCACGGCGT  750

seq1  GAAGGAAGGGCAGACAGCGGTAAAGTCAGCGCGGGAGCATCCATCTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGGCAGACAGCGGTAAAGTCAGCGCGGGAGCATCCATCTGCCC  800

seq1  TGACAGCCAGCAATTACACCGCGTGATCGCCAGATTACTCCAAATGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCAGCAATTACACCGCGTGATCGCCAGATTACTCCAAATGCATT  850

seq1  TATTACAGGGGTTAGAAGCGGGGGACTTATTTACTGGCAAATCCATACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGGGGTTAGAAGCGGGGGACTTATTTACTGGCAAATCCATACTC  900

seq1  ATTACAAGACTCAGCCTAGCCTAGACTGAAAACAGCTCAACTGAAACAAA  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAC-AGACTCAGCCTAGCCTAGACTGAAAACAGCTCAACTGAAACAAA  949

seq1  TAATTACCAAAGTCCTTCCAGCGCGAGGCTCTCAGGTGGTTGTGTGTAGG  1000
      | |||||| ||||||||||||||||| |||||||||||| |||||||| |
seq2  T-ATTACC-AAGTCCTTCCAGCGCGA-GCTCTCAGGTGG-TGTGTGTA-G  994

seq1  GGGGACACCAGGCCCTTCCTTGAAGCGAAGGGAGGCGTCGGCTGGTGGAG  1050
      |||||||||||||| |  | |||| |||  ||||||||| ||||||||||
seq2  GGGGACACCAGGCCAT--CATGAAACGA--GGAGGCGTC-GCTGGTGGAG  1039

seq1  GATGCCGGGTC  1061
      |||||| ||||
seq2  GATGCCCGGTC  1050

seq1: chr19_7398506_7398785
seq2: B6Ng01-294J23.g_75_354 (reverse)

seq1  TAACAACAACAACAACAACAACAACATCAAAAAAAAAAAACAAACCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAACAACAACAACAACAACATCAAAAAAAAAAAACAAACCTCTG  50

seq1  CTTCAATCCCCCTACCTAAGCCTCTTCCTATGCTGGGACCACAGGCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCCCCCTACCTAAGCCTCTTCCTATGCTGGGACCACAGGCCCAA  100

seq1  GCCACCTCTGCAGGTAAGACAGGTCATTTCTTATCAAGTATTATTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCTGCAGGTAAGACAGGTCATTTCTTATCAAGTATTATTCATTT  150

seq1  GTGCAAAATAACAATAAATCCAGTACATGTTTACACAACCTACTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAATAACAATAAATCCAGTACATGTTTACACAACCTACTCTCTTT  200

seq1  AGGGAAACTTGTTTTCCAAAACAACTGAAATTTGATTAAAAGTGTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTTGTTTTCCAAAACAACTGAAATTTGATTAAAAGTGTTGCCT  250

seq1  TTAACTTATCTGCCTTAATGGCGGACAGGT  280
      ||||||||||||||||||||||||||||||
seq2  TTAACTTATCTGCCTTAATGGCGGACAGGT  280