BAC Information

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BAC

Clone NameB6Ng01-295F03
Chromosome19 (Build37)11 (Build37)
Map Location 31,327,228 - 31,328,3185,752,911 - 5,753,337
singlet/doubletsingletsinglet
Overlap genePrkg1
Upstream geneLOC100042088, LOC668020, EG546723, Dkk1, LOC625995, Cstf2t, 8430431K14Rik
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F03.bB6Ng01-295F03.g
ACCGA091216GA091217
length1,097609
definitionB6Ng01-295F03.b B6Ng01-295F03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,327,228 - 31,328,318)(5,752,911 - 5,753,337)
sequence
gaattctttctcatttttcatctgtcaggctgctagaaaaaggacaggtc
acgaggctgagctagcttagaattaggtttatatttctatatgttctgat
caatttctccctttgctcctaaggcaaaacctttgggcatcttagggtcc
agtcgattgtaatccccatgattgtacttggttaacaggccccaaccacc
aggttcaggagcccaaaattgtaagatagctttgtgctcatataatttct
tagccatcagtaagcctgtttttgctgggtgccaggcctcctcctataac
tagccttctctgccagctcttaactccctgaattttgcaacatgaatagg
tctggaattctacttggaagctactgagagattttgtgtacttaaacaat
atatgatatggcctgatttgtctcagaaagtttgttctactagcatcagt
gtaaaagagggatcgcagaaatcaagtatagattctgagaggctaggata
aagattcttagacaatgaagacctgagctagagaactaagtataaactat
agaagagaaaacagaagcaagaaccagagagagatttaaaagaaaataga
aaattaagcaaccatcatctcttaaatatttctgtgtgtgtgtcagaata
aggatgacatgttgcctcattaattctgtgtccctcatagttttaaaggc
tggtcaaggatgactggattctgaacaaaataatgactctttcatatttc
tcatggttatgatattattcttggctgcacatgtttaaagggggaacata
ttttaattttccatcattgctcaaagtaagagctcgagtaagttggagag
tttatatgcatgatctctttgaagagaggcatgtgctccataactcagga
agcatggaaaatatttaaagccaaacctccattagttctgatgataatat
ttatggaggaagttgagccattcagcttgggagaaatatatcaagctgag
atggttaatgcaccaccattttacaatgcatttgcgatgaagcactttgt
tctaaagtatttagtattaaattgagtaaggaaaaattggagaactt

gaattcactctctcactaatacttaatgaaagtgagcattcactttgtct
ctgaggattgtttctgcacataaattatttggaattatgcgagagatttg
tctttttccctcattaattatgtaattactttaattatttatgtaagtat
agatttattttgttgtttaaattactttaactttggccactgggaaacag
taaatttagttcctggctccttttattatgcgccatcttttttttttcct
cactttcttatatatgttgatactacaaaatatgccaagttcactgtgta
aacgcctttgctaaaccccacaatcagccacttctccatggatcattgat
tcctttgattgaagaacagtgttaggaagcaagatgttggttctagagta
cttactgctaccagaacatttttgcttgttagtcctccccactgagatag
tctaggataggaaacatatatatacatatatacatatacatatatgtgtg
tgtatatatatatacacatatacacatatacatatatatgtgtgtgtatg
tgtgtatgtatatgtgtatatgtgtagatatatatagatatgtatatgtg
tgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31327228_31328318
seq2: B6Ng01-295F03.b_48_1144 (reverse)

seq1  AAGTTCTC--ATTTTTCC-TACTCATTTTAATACTAAATAACTTTAGAAC  47
      ||||||||  |||||||| |||||| ||||||||||||| ||||||||||
seq2  AAGTTCTCCAATTTTTCCTTACTCAATTTAATACTAAAT-ACTTTAGAAC  49

seq1  -AAGTGCTTCATCGCAAATGCATTGTTAAATGGT-GTGCATT-ACCATCT  94
       ||||||||||||||||||||||||| ||||||| ||||||| |||||||
seq2  AAAGTGCTTCATCGCAAATGCATTGTAAAATGGTGGTGCATTAACCATCT  99

seq1  CAGCTTGATATATTTCT-CCAAGCTGAATGGCTCAACTTCCTCCATAAAA  143
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CAGCTTGATATATTTCTCCCAAGCTGAATGGCTCAACTTCCTCCAT-AAA  148

seq1  TATTATCATCAG-ACTAATGGAGGTTTGGCTTTAAATATTTTCCATGCTT  192
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATTATCATCAGAACTAATGGAGGTTTGGCTTTAAATATTTTCCATGCTT  198

seq1  CCTGAGTTATGGAGCACATGCCTCTCTTCAAAGAGATCATGCATATAAAC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTATGGAGCACATGCCTCTCTTCAAAGAGATCATGCATATAAAC  248

seq1  TCTCCAACTTACTCGAGCTCTTACTTTGAGCAATGATGGAAAATTAAAAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACTTACTCGAGCTCTTACTTTGAGCAATGATGGAAAATTAAAAT  298

seq1  ATGTTCCCCCTTTAAACATGTGCAGCCAAGAATAATATCATAACCATGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCCCTTTAAACATGTGCAGCCAAGAATAATATCATAACCATGAG  348

seq1  AAATATGAAAGAGTCATTATTTTGTTCAGAATCCAGTCATCCTTGACCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAAGAGTCATTATTTTGTTCAGAATCCAGTCATCCTTGACCAG  398

seq1  CCTTTAAAACTATGAGGGACACAGAATTAATGAGGCAACATGTCATCCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAACTATGAGGGACACAGAATTAATGAGGCAACATGTCATCCTT  448

seq1  ATTCTGACACACACACAGAAATATTTAAGAGATGATGGTTGCTTAATTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACACACACACAGAAATATTTAAGAGATGATGGTTGCTTAATTTT  498

seq1  CTATTTTCTTTTAAATCTCTCTCTGGTTCTTGCTTCTGTTTTCTCTTCTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTTTTAAATCTCTCTCTGGTTCTTGCTTCTGTTTTCTCTTCTA  548

seq1  TAGTTTATACTTAGTTCTCTAGCTCAGGTCTTCATTGTCTAAGAATCTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATACTTAGTTCTCTAGCTCAGGTCTTCATTGTCTAAGAATCTTT  598

seq1  ATCCTAGCCTCTCAGAATCTATACTTGATTTCTGCGATCCCTCTTTTACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCCTCTCAGAATCTATACTTGATTTCTGCGATCCCTCTTTTACA  648

seq1  CTGATGCTAGTAGAACAAACTTTCTGAGACAAATCAGGCCATATCATATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTAGTAGAACAAACTTTCTGAGACAAATCAGGCCATATCATATA  698

seq1  TTGTTTAAGTACACAAAATCTCTCAGTAGCTTCCAAGTAGAATTCCAGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGTACACAAAATCTCTCAGTAGCTTCCAAGTAGAATTCCAGAC  748

seq1  CTATTCATGTTGCAAAATTCAGGGAGTTAAGAGCTGGCAGAGAAGGCTAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATGTTGCAAAATTCAGGGAGTTAAGAGCTGGCAGAGAAGGCTAG  798

seq1  TTATAGGAGGAGGCCTGGCACCCAGCAAAAACAGGCTTACTGATGGCTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAGGAGGCCTGGCACCCAGCAAAAACAGGCTTACTGATGGCTAA  848

seq1  GAAATTATATGAGCACAAAGCTATCTTACAATTTTGGGCTCCTGAACCTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATATGAGCACAAAGCTATCTTACAATTTTGGGCTCCTGAACCTG  898

seq1  GTGGTTGGGGCCTGTTAACCAAGTACAATCATGGGGATTACAATCGACTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGGGCCTGTTAACCAAGTACAATCATGGGGATTACAATCGACTG  948

seq1  GACCCTAAGATGCCCAAAGGTTTTGCCTTAGGAGCAAAGGGAGAAATTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAGATGCCCAAAGGTTTTGCCTTAGGAGCAAAGGGAGAAATTGA  998

seq1  TCAGAACATATAGAAATATAAACCTAATTCTAAGCTAGCTCAGCCTCGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATATAGAAATATAAACCTAATTCTAAGCTAGCTCAGCCTCGTG  1048

seq1  ACCTGTCCTTTTTCTAGCAGCCTGACAGATGAAAAATGAGAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTTTTTCTAGCAGCCTGACAGATGAAAAATGAGAAAGAATTC  1097


seq1: chr11_5752911_5753337
seq2: B6Ng01-295F03.g_533_676 (reverse)

seq1  ATACACACACACACATATATGTATATACACACATATATACACACACATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATACACACATATATACATACACACACGCACATATATATATACACAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATATGTATATACACACACATATATGTATATACACACACATATATAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACATATATACACACACACACATATATACACACATATATATATAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATATACACCCACACACACATATATATACACACATATATATACAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACATACACACACTATATATATATATACACACACATATATACACACATGCA  300
                             ||||||||||| ||||||| |  |   
seq2  -----------------------ATACACACACACATATACATATCT---  24

seq1  CATATATATATACACACACACATATATACACACACACATATATACACACA  350
       |||||||| |||||| | ||| ||||||| ||||||||      |||||
seq2  -ATATATATCTACACATATACACATATACATACACACAT------ACACA  67

seq1  CACACACACATATATATACATATACACACACATATACACACACACACATA  400
      |||| | | || |||||   ||||     | ||||| | |||||||||||
seq2  CACATATATATGTATATGTGTATATGTGTATATATATATACACACACATA  117

seq1  TATATGTATATGTATATGTATATATAT  427
      ||| | ||| | |||||||||||||||
seq2  TATGTATATGTATATATGTATATATAT  144


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