BAC Information

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BAC

Clone NameB6Ng01-295F04
Chromosome19 (Build37)
Map Location 28,635,827 - 28,809,690
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneLOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295F04.bB6Ng01-295F04.g
ACCGA091218GA091219
length1,053970
definitionB6Ng01-295F04.b B6Ng01-295F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,635,827 - 28,636,838)(28,808,731 - 28,809,690)
sequence
gaattcacaaagatgcctctacagtctgttgttcaaatgtgcacacagct
ctgtgagagctacaaacctattaagtggaaaacaaggaaccacgtaaaca
cacaagagcagggagggcgtttcaggggggttcgcgttgttttttgttgt
tttgttttgtttaagtgaggtggttactgtggcattacgttttcctctct
ttcctttttcttctgcaggaaagactgaagttagttgttaactgcacaaa
gaagttaacatttaacctaagggctgggaatgtctgagctctagtcctcc
ctcccccttctcactggagagaaaatggcttcagaaaaaaaaaaaaaaca
atcttcccgattctgtctgatttgggatgagctctggctgccatcatttc
cttcttcactcagggccatatcccacatctcaccacagggccccctatac
acactctccagccaggccttctccccagtctatgcccatccccaagtccc
cagtctatgcccatccccaagtccccagtattcccagccaaaaaacaaac
aaacaaacaaacaaacaaaaaaaaaaaaacaactcaagtgttgcctcttc
cttgaaatcagttttccaggtttctacctttccagtccaagttcaaagtg
catcaccccctcttttgtctcctaggtaacgctgttttatgcatctttta
ttaaggtattgattgggtctactgcacaccgctttattgttagccttccc
attaactatcagcaagatgaggatagaccctgtgcccttatctacctcca
ttcttactggccttacccctggagttcaggccacagttttcttcgctaaa
ggatggggcagacaccaattgtccattgttccagggtggattgaagcacc
cccattgcaatgaaagcacgtttcagtaccaggtgggatgagccagaaag
gcaaaaggaagatcttgggatttttatcattttaaagtggggaacataaa
taattaaaatttgaaattgcaaggcttccttcagaaagcttgaagggggg
cgg
gaattcagtttatataatttatttatttttattttatgtgtaatgggtag
gtgctctttgcctctgcaagtctgtgtaccacgtgcaggcagtaccgaca
ggctcgataaggacatgacttctggaaacagatggctgcaagctactgtg
ctggtgctgggttctgagaatcaaactccggtcctctggaagagcaaaga
gtgctcttaaccactgaggcattgctccagccccctgaaactttgtttta
tttgttttgaagattaagaggtgctttaaactgacagacaaaatgcttaa
ttttatttaaatgtttaaaaatgcaactgcgtgaaatagctactttgtta
acaggcattacttcccaaagtcataatccttgtagtaagaccatttaaaa
tttgttctcttaggttttttagggtggactgtaatatatcgtttcaacca
ctttccatgttatacaacagagcttccaaatttattcccactctctacct
gaaattttgaattcttcagtcaacattattttttgtatacgcagatgaat
catattgataaagatactgacactgatcgtagttgttgctgcgatcagct
gtcctacaattaacatagtcgctcaagcactcctgttcatttgtctgaga
agcttacgaacttcttttgttgttcttgtttttgagacagggttactctg
tgtagccaggtctgccctggaattggctctgtagaccaagttgaccccac
actctgagatctgcctgcttctgccccctcagagctgagattagcagtgt
gtgcctctgtggccagctttgtttgttcgttgttgttccggtactctcgg
atttctttaggtaaattgattaaaagactttatgaatgttttacattatt
tttttaaaagtagttttcctttattgggggaacgcatccttcttttgatg
atcctttgagagcaatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28635827_28636838
seq2: B6Ng01-295F04.b_48_1100

seq1  GAATTCACAAAGATGCCTCTACAGTCTGTTGTTCAAATGTGCACACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGATGCCTCTACAGTCTGTTGTTCAAATGTGCACACAGCT  50

seq1  CTGTGAGAGCTACAAACCTATTAAGTGGAAAACAAGGAACCACGTAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGCTACAAACCTATTAAGTGGAAAACAAGGAACCACGTAAACA  100

seq1  CACAAGAGCAGGGAGGGCGTTTCAGGGGGGTTCGCGTTGTTTTTTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGCAGGGAGGGCGTTTCAGGGGGGTTCGCGTTGTTTTTTGTTGT  150

seq1  TTTGTTTTGTTTAAGTGAGGTGGTTACTGTGGCATTACGTTTTCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTAAGTGAGGTGGTTACTGTGGCATTACGTTTTCCTCTCT  200

seq1  TTCCTTTTTCTTCTGCAGGAAAGACTGAAGTTAGTTGTTAACTGCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCTTCTGCAGGAAAGACTGAAGTTAGTTGTTAACTGCACAAA  250

seq1  GAAGTTAACATTTAACCTAAGGGCTGGGAATGTCTGAGCTCTAGTCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAACATTTAACCTAAGGGCTGGGAATGTCTGAGCTCTAGTCCTCC  300

seq1  CTCCCCCTTCTCACTGGAGAGAAAATGGCTTCAGAAAAAAAAAAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTTCTCACTGGAGAGAAAATGGCTTCAGAAAAAAAAAAAAAACA  350

seq1  ATCTTCCCGATTCTGTCTGATTTGGGATGAGCTCTGGCTGCCATCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCGATTCTGTCTGATTTGGGATGAGCTCTGGCTGCCATCATTTC  400

seq1  CTTCTTCACTCAGGGCCATATCCCACATCTCACCACAGGGCCCCCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCACTCAGGGCCATATCCCACATCTCACCACAGGGCCCCCTATAC  450

seq1  ACACTCTCCAGCCAGGCCTTCTCCCCAGTCTATGCCCATCCCCAAGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCAGCCAGGCCTTCTCCCCAGTCTATGCCCATCCCCAAGTCCC  500

seq1  CAGTCTATGCCCATCCCCAAGTCCCCAGTATTCCCAGCCAAAAAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATGCCCATCCCCAAGTCCCCAGTATTCCCAGCCAAAAAACAAAC  550

seq1  AAACAAACAAACAAACAAAAAAAAAAAAACAACTCAAGTGTTGCCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAAAAAAAAAAACAACTCAAGTGTTGCCTCTTC  600

seq1  CTTGAAATCAGTTTTCCAGGTTTCTACC-TTCCAGTCCAAGTTCAAAGTG  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTGAAATCAGTTTTCCAGGTTTCTACCTTTCCAGTCCAAGTTCAAAGTG  650

seq1  CATCACCCCCTCTTTTGTCTCCTAGGTAACGCTGTTTTATGCATCTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCCCTCTTTTGTCTCCTAGGTAACGCTGTTTTATGCATCTTTTA  700

seq1  TTAAGGTATTGATTGGGTCTACTGCACACCGCTTTA-TGTTAGCCTTCCC  748
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAAGGTATTGATTGGGTCTACTGCACACCGCTTTATTGTTAGCCTTCCC  750

seq1  ATTAACTATCAGCAAGATGAGGATAGACCCTGTG-CCTTATCTACCTCCA  797
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTAACTATCAGCAAGATGAGGATAGACCCTGTGCCCTTATCTACCTCCA  800

seq1  TTCTTACTG--CCTACCCCT-GAGTTCAGGCCACAGTTT--CTCG-TAGA  841
      |||||||||  | ||||||| ||||||||||||||||||   ||| || |
seq2  TTCTTACTGGCCTTACCCCTGGAGTTCAGGCCACAGTTTTCTTCGCTAAA  850

seq1  GGAT-GGGCAGACACCAA-TGTCCA-TGTT-CAGG--TGAT--GAGCACC  883
      |||| ||||||||||||| |||||| |||| ||||   |||   ||||||
seq2  GGATGGGGCAGACACCAATTGTCCATTGTTCCAGGGTGGATTGAAGCACC  900

seq1  CC--ATGC-ATG-AAGCACGTTTCAGTA-CAGGT-GGATGAG-CAG-AAG  925
      ||   ||| ||| ||||||||||||||| ||||| ||||||| ||| |||
seq2  CCCATTGCAATGAAAGCACGTTTCAGTACCAGGTGGGATGAGCCAGAAAG  950

seq1  GCAAAA-GAAGA-CTAGG--ATTTTATCA-TTTAAAGTGGG--ACA-AAA  967
      |||||| ||||| || ||   |||||||| |||||||||||  ||| |||
seq2  GCAAAAGGAAGATCTTGGGATTTTTATCATTTTAAAGTGGGGAACATAAA  1000

seq1  TAAT--AAAATTGAAA-TGCAATGCTT-CTTCAG-AAGC-TGA--GGGGG  1009
      ||||  ||| |||||| ||||| |||| |||||| |||| |||  |||||
seq2  TAATTAAAATTTGAAATTGCAAGGCTTCCTTCAGAAAGCTTGAAGGGGGG  1050

seq1  CGG  1012
      |||
seq2  CGG  1053

seq1: chr19_28808731_28809690
seq2: B6Ng01-295F04.g_65_1034 (reverse)

seq1  GCTCATTGCTCTC-AAGGATCATCAAA--GAGGATGCG-TCCCCAAATAA  46
      ||||||||||||| |||||||||||||   |||||||| ||||| |||||
seq2  GCTCATTGCTCTCAAAGGATCATCAAAAGAAGGATGCGTTCCCCCAATAA  50

seq1  AGG-AAACTACTTT--AAAAAATAATGTAAAACATTCAT-AAGTCTTTT-  91
      ||| ||||||||||  ||||||||||||||||||||||| ||||||||| 
seq2  AGGAAAACTACTTTTAAAAAAATAATGTAAAACATTCATAAAGTCTTTTA  100

seq1  ATC-ATTTACCTAAAGAAATCCGAGAGTACCGGAACAACAACGAACAAAC  140
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTACCTAAAGAAATCCGAGAGTACCGGAACAACAACGAACAAAC  150

seq1  AAAGCTGGCCACAGAGGCACACACTGCTAATCTCAGCTCTGAGGGGGCAG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGCCACAGAGGCACACACTGCTAATCTCAGCTCTGAGGGGGCAG  200

seq1  AAGCAGGCAGATCTCAGAGTGTGGGGTCAACTTGGTCTACAGAGCCAATT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAGATCTCAGAGTGTGGGGTCAACTTGGTCTACAGAGCCAATT  250

seq1  CCAGGGCAGACCTGGCTACACAGAGTAACCCTGTCTCAAAAACAAGAACA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGACCTGGCTACACAGAGTAACCCTGTCTCAAAAACAAGAACA  300

seq1  ACAAAAGAAGTTCGTAAGCTTCTCAGACAAATGAACAGGAGTGCTTGAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAGTTCGTAAGCTTCTCAGACAAATGAACAGGAGTGCTTGAGC  350

seq1  GACTATGTTAATTGTAGGACAGCTGATCGCAGCAACAACTACGATCAGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTTAATTGTAGGACAGCTGATCGCAGCAACAACTACGATCAGTG  400

seq1  TCAGTATCTTTATCAATATGATTCATCTGCGTATACAAAAAATAATGTTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTTTATCAATATGATTCATCTGCGTATACAAAAAATAATGTTG  450

seq1  ACTGAAGAATTCAAAATTTCAGGTAGAGAGTGGGAATAAATTTGGAAGCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAATTCAAAATTTCAGGTAGAGAGTGGGAATAAATTTGGAAGCT  500

seq1  CTGTTGTATAACATGGAAAGTGGTTGAAACGATATATTACAGTCCACCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTATAACATGGAAAGTGGTTGAAACGATATATTACAGTCCACCCT  550

seq1  AAAAAACCTAAGAGAACAAATTTTAAATGGTCTTACTACAAGGATTATGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTAAGAGAACAAATTTTAAATGGTCTTACTACAAGGATTATGA  600

seq1  CTTTGGGAAGTAATGCCTGTTAACAAAGTAGCTATTTCACGCAGTTGCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGAAGTAATGCCTGTTAACAAAGTAGCTATTTCACGCAGTTGCAT  650

seq1  TTTTAAACATTTAAATAAAATTAAGCATTTTGTCTGTCAGTTTAAAGCAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACATTTAAATAAAATTAAGCATTTTGTCTGTCAGTTTAAAGCAC  700

seq1  CTCTTAATCTTCAAAACAAATAAAACAAAGTTTCAGGGGGCTGGAGCAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATCTTCAAAACAAATAAAACAAAGTTTCAGGGGGCTGGAGCAAT  750

seq1  GCCTCAGTGGTTAAGAGCACTCTTTGCTCTTCCAGAGGACCGGAGTTTGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTGGTTAAGAGCACTCTTTGCTCTTCCAGAGGACCGGAGTTTGA  800

seq1  TTCTCAGAACCCAGCACCAGCACAGTAGCTTGCAGCCATCTGTTTCCAGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAACCCAGCACCAGCACAGTAGCTTGCAGCCATCTGTTTCCAGA  850

seq1  AGTCATGTCCTTATCGAGCCTGTCGGTACTGCCTGCACGTGGTACACAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTCCTTATCGAGCCTGTCGGTACTGCCTGCACGTGGTACACAGA  900

seq1  CTTGCAGAGGCAAAGAGCACCTACCCATTACACATAAAATAAAAATAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGCAAAGAGCACCTACCCATTACACATAAAATAAAAATAAAT  950

seq1  AAATTATATAAACTGAATTC  960
      ||||||||||||||||||||
seq2  AAATTATATAAACTGAATTC  970