BAC Information

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BAC

Clone NameB6Ng01-296P05
Chromosome19 (Build37)
Map Location 33,342,054 - 33,343,252
singlet/doubletsinglet
Overlap gene6530404N21Rik
Upstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296P05.bB6Ng01-296P05.g
ACCGA092433GA092434
length1,1731,193
definitionB6Ng01-296P05.b B6Ng01-296P05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataggtgtacaataagaatgacaattcagttgggcgtggtggct
catgcctttaatcccagcacttgggaggctgaggcaggagatttctgagt
ttgaggtcagcctggtctacaaagtgagttccaggacagccagggctaca
cagagaaaccctgtctagaaaaaaccaaaaaaccaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaagacaattcttcaagatgtaaatttgcataaactac
accctttatggaatcctgacttgagacaatagaaagaaaatcagttttta
aaaatagtttatagcagatgctataaacaataatttcagtgttgtgtttc
cattggccctaaatctgtctctgtctctctcaatccagttaattttctct
tctaattctgctgcattctatctatgtagcacctgtgaagagggaacttt
acctcctcacttatgtacacaagttggtgccaattaattgaaattatgcc
ggagggacatgctgagtaagaaagggaaaaaacaaaacaaaacaaaacaa
caacaaactgtgtgtgtgtgcgcgcgcgcgtgcatgcgtgtgtgcgtgcg
tgtgcatgcacccgcttggaaactgggaaggaatggcaaatcagccctct
cagcatgcttgccgtgctccacactgccccctgttggcggaggtaaatgc
taagagcacccactgctggacacctgctactttgccatttggagtactga
gaatgatgctgtttccttagggaagtgtgagtgtgcttgcttctttcaca
tcctccgtggtaggcacagcagcgaggggtgctcttctttgttgtgtgaa
gtgactgggacatatttctggagaaattgacttctgaagcattacaatat
caaacatgcatcatattgggcccaagatgtaatggctgcttttctatgtt
agggagttttattcttgtgcacaagaaagtatctaaacgggacttcatag
atgacagctctagaaatgatggctcgttactctcagcactaagcttcatg
tgtgcttcatgtgagacagaaacggcgtcttgtaaaagcgaaaggttaat
ttactgtggtgattcctcaatgcttgcacgagtacagctgcataaatgcc
agagtaagggcaatctctttgga
gaattctctgttttgctctgtagcccactttttaaattgggttatttggt
tctctggaatctaacttctagaattctttgtatatactggattttagccc
tctattagatgtagtattggtaaagatcttttcacaatgtgtaggctgcc
attttgtcctcatgacagtgtcctttgccttacagaagcatttcaatttt
atgagatcccatttgtctatagttgatcttagagcccgaaccatggtatt
ctaatcaggaaattttctcctgtggccatatgttcaaagctttttcccaa
ttcctcttataataatagattcagtgtatgtttttatgtggaggttcttg
atccacttggccttgagctttgcacaagaagaaaagaatgggtcaattca
aattcttctacatgcagaccaccacttgagtcagcaccacttgttgaata
tgctgtactttttttccccactggatggttaaagcttgtcaaagatcaag
tgaccatagggtgtgggttcatttctgggtcttcacttctattccactga
tctacctgcctctgtaccaataccatgtggtttttattactattgctctg
tagcagagcttgaggtcagggatggtgattcccccagaagttctcttatt
gttgagaatagttttatctatgctggttttgttgttgctgttgttgttcc
aaatgaatttgagaattgctctatctctatgaagaattaagtttgaattt
tgatggggattgcattgaacctgcaaactgcttttggtaatatggtcatt
tttactatgttaatcttgctgacccatgatcatggaatatctttacaaat
tctgaggtcttcttcaatttctttcttcaaagacttgaagttcttttcat
atagatatttcactttcttggtttagagtcacaccatgatctttatatta
tttgtgactattgtgaagggtggcatttccctaatttctttctcaaactg
tctatccttgagtagaggaaagctactgatttaggttatttttatattca
gccactgtgcttcaagttgttttatcagcctggaggagttctttgggtgg
acttttgagctttgttatgtttggacttttatgaacaactgtgagcttat
gccaatggccaaccacctgtgaatatcgagactccttaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33342054_33343252
seq2: B6Ng01-296P05.b_48_1220

seq1  GAATTCATAGGTGTACAATAAGAATGACAATTCAGTTGGGCGTGGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTGTACAATAAGAATGACAATTCAGTTGGGCGTGGTGGCT  50

seq1  CATGCCTTTAATCCCAGCACTTGGGAGGCTGAGGCAGGAGATTTCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAATCCCAGCACTTGGGAGGCTGAGGCAGGAGATTTCTGAGT  100

seq1  TTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  150

seq1  CAGAGAAACCCTGTCTAGAAAAAACCAAAAAACCAAAAAAAAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTAGAAAAAACCAAAAAACCAAAAAAAAAAAAAAAA  200

seq1  AAAAAAAAAAAAAAAGACAATTCTTCAAGATGTAAATTTGCATAAACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGACAATTCTTCAAGATGTAAATTTGCATAAACTAC  250

seq1  ACCCTTTATGGAATCCTGACTTGAGACAATAGAAAGAAAATCAGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTATGGAATCCTGACTTGAGACAATAGAAAGAAAATCAGTTTTTA  300

seq1  AAAATAGTTTATAGCAGATGCTATAAACAATAATTTCAGTGTTGTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTTATAGCAGATGCTATAAACAATAATTTCAGTGTTGTGTTTC  350

seq1  CATTGGCCCTAAATCTGTCTCTGTCTCTCTCAATCCAGTTAATTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCCTAAATCTGTCTCTGTCTCTCTCAATCCAGTTAATTTTCTCT  400

seq1  TCTAATTCTGCTGCATTCTATCTATGTAGCACCTGTGAAGAGGGAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTGCTGCATTCTATCTATGTAGCACCTGTGAAGAGGGAACTTT  450

seq1  ACCTCCTCACTTATGTACACAAGTTGGTGCCAATTAATTGAAATTATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCACTTATGTACACAAGTTGGTGCCAATTAATTGAAATTATGCC  500

seq1  GGAGGGACATGCTGAGTAAGAAAGGGAAAAAACAAAACAAAACAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACATGCTGAGTAAGAAAGGGAAAAAACAAAACAAAACAAAACAA  550

seq1  CAACAAACTGTGTGTGTGTGCGCGCGCGCGTGCATGCGTGTGTGCGTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACTGTGTGTGTGTGCGCGCGCGCGTGCATGCGTGTGTGCGTGCG  600

seq1  TGTGCATGCACCCGCTTGGAAACTGGGAAGGAATGGCAAATCAGCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGCACCCGCTTGGAAACTGGGAAGGAATGGCAAATCAGCCCTCT  650

seq1  CAGCATGCTTGCCGTGCTCCACACTGCCCCCTGTTGGCGGAGGTAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCTTGCCGTGCTCCACACTGCCCCCTGTTGGCGGAGGTAAATGC  700

seq1  TAAGAGCACCCACTGCTGGACACCTGCTACTTTGCCATTTGGAGTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACCCACTGCTGGACACCTGCTACTTTGCCATTTGGAGTACTGA  750

seq1  GAATGATGCTGTTTCCTTAGGGAAGTGTGAGTGTGCTTGCTTCTTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGCTGTTTCCTTAGGGAAGTGTGAGTGTGCTTGCTTCTTTCACA  800

seq1  TCCTCCGTGGTAGGCACAGCAGCGAGGGGTGCTCTTCTTTGTTGTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGTGGTAGGCACAGCAGCGAGGGGTGCTCTTCTTTGTTGTGTGAA  850

seq1  GTGACTGGGACATATTTCTGGAGAAATTGACTTCTGAAGCATTACAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGGACATATTTCTGGAGAAATTGACTTCTGAAGCATTACAATAT  900

seq1  CAAACATGCATCATATTGGGCCCAAGATGTAATGGCTGCTTTCTAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  CAAACATGCATCATATTGGGCCCAAGATGTAATGGCTGCTTTTCTATGTT  950

seq1  AGGGAG-TTTATTC-TGTGCACAGAAAGGTATCTAAACGGGACTTCATAG  998
      |||||| ||||||| ||||||||  || ||||||||||||||||||||||
seq2  AGGGAGTTTTATTCTTGTGCACAAGAAAGTATCTAAACGGGACTTCATAG  1000

seq1  AAGGACAGCTCCTAGAAATGATGCCTTCGTTTACCTCCTCAGCCAACTTA  1048
       | ||||||| |||||||||||| | ||| ||||   ||||||  |||  
seq2  -ATGACAGCT-CTAGAAATGATGGC-TCG-TTAC--TCTCAGC--ACT--  1040

seq1  AAGCTTCATGTGTGCTTCATGTGAGGACAGAAACGGCGTCTTGTAGAAGA  1098
      |||||||||||||||||||||||| |||||||||||||||||||| ||| 
seq2  AAGCTTCATGTGTGCTTCATGTGA-GACAGAAACGGCGTCTTGTAAAAG-  1088

seq1  GGCGGAAAGGTTAATATACTTTGTGGTGATACCTTCCCAAATGCTTTGGC  1148
          ||||||||||| |||  ||||||||    ||||  |||||||  ||
seq2  ---CGAAAGGTTAATTTAC--TGTGGTGA----TTCCTCAATGCTT--GC  1127

seq1  AGCAGTAACAAGCTTGCATAATATGGCAGGAGGTAGGGGCATCTCTTTGG  1198
      |  ||||   ||| ||||||| ||| || |||  ||||  ||||||||||
seq2  ACGAGTA--CAGC-TGCATAA-ATGCCA-GAGTAAGGGCAATCTCTTTGG  1172

seq1  A  1199
      |
seq2  A  1173