BAC Information

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BAC

Clone NameB6Ng01-298L13
Chromosome19 (Build37)
Map Location 35,603,660 - 35,604,829
singlet/doubletsinglet
Overlap geneLOC100042292
Upstream geneIfit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298L13.bB6Ng01-298L13.g
ACCGA093755GA093756
length1,1831,196
definitionB6Ng01-298L13.b B6Ng01-298L13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactaagccagtgttagtagttcattgaaaatataaaatcagtt
aaattaatctatgtgcatctgcctaaaagtatatttgaataagagcagtg
caagtgtttcaggttattgaatatgtgctacacttggtaataggaaaccc
ttgagcatgtctgagaaggttcccttgaagtttaacttaccaagtgcttc
ttatttagggaacagctgtccctatggttatggtatgaatcttgtattta
aggatatgtatttccataaaacattgcctttaaataggagtcaactactt
cagctgagactcaatatgttgcagtgctgcagggaaaacttggccatgtt
ggacttgctgagagtccatatgtcagtttctaacattatgccttcccaat
ccctcctcctgggtaacttttgaccgtgtgtatggcttcattacccagtc
ccagtgcatgtaacactataataacagataggaatgataaaaatgtaggg
tttccttttcaaagattttaacaatcctttgatcctaaagcataaactac
ttacaagtatgtttgtatcctttaaaaagagaagtttggatgatttctaa
acaaaattacaaatacagtacattttagaaaacaaagcaggaaagaattt
aattaattttttggaaagattgaaactgctcaatattaggctaatgaaat
taacattcagtaagagaaagtggtcagttctgaccaacatgacaaacctg
gcaggttaacataagtcctaatctgttcagtaaatttaatctctagtgac
tacaaaaatttgacccagaaccatccagagactgccctacctgggaatcc
atcccataaacaaccaccaaacccaggcactattgcatataccaacaaaa
ttttgctgacaggaccctgatatagctgtctcctgtgagcctatgccagt
gcctggcaaatacagaagtggatgctcacagccatcttattagatgggaa
catagggtcccttaatggaggagctaggagaaagtacccaagagctgaag
gggtctgcacctataggtagaaacataattatgaaacttacaagtacccc
cagaagcctcattgttcttctagctgcatattgttagccagaaggattgc
ctagtcaggcatcaatggaagggagaggccctt
gaattcactcggacaaccggatccttctacggcaaagcttttattgcttc
aacataaggaagaccccgaacccggaaaatggtgctgcttatatagcccg
cagcgtgacgtttcagcacccgatgtggcgtgacagcacctgattagttg
ctcgcccatcaccccattactacgccctgatatgggcagtgactgggcgt
gaatttactcttgcacttgcacataaggcttgtttactagttaggcgtag
tggaagccagcgccatcttataatggcgattgctcacagcacggctctcc
acagttaacagcacttactggtcttgcagagatccgaggtttggtttata
atacccacatacagtggctcagcgcctctgtaattccaatattcccaccc
ccgttttttttctgcacttatggtgtggaatttgaattttagatttatca
gttgtgttttggaacccacagttacttcctctctgcattttgaccaacag
tccagttttgtaatagtccttatctgttgtaaaaggaagcttatttgatg
aagagtgagagctatggtaatctgtgaatctaagcataattatttagcat
attgttacagatcgtgttagagtaggaaaaacattaggtcatttgctggg
gtttatgacatctcaagtctcaggtagttgactagtttgatggtatcagt
catggattgcctcctattggatgaaccataatttaaatcagacagttgtt
ggttacctctagatataagtgccacaattgaatccttggatatatcttta
ttctgctaaccattgttgtgttcataggctttataggtgggtaggaccat
tgattgctttttttttttttttcactaagttgtcttgagatacagtactc
agcagggaggcttccagatcagttctatttcaattccttctaagttctgg
tttcttgaagtggtgtggccaccttaaggcattaggaactcaatttcagg
ttctggagatactatagaacattaacaatttttggtcttgtttttgggga
gactcttaactgttattgaatttgtagataagcaaaggccaatcatccag
cgattatatggattattggattgaaggagaccgatctcaaattcacttac
caaccatttgttaggccctttccaagggttcctctgagcgtaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35603660_35604829
seq2: B6Ng01-298L13.b_49_1231

seq1  GAATTCAACTAAGCCAGTGTTAGTAGTTCATTGAAAATATAAAATCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAAGCCAGTGTTAGTAGTTCATTGAAAATATAAAATCAGTT  50

seq1  AAATTAATCTATGTGCATCTGCCTAAAAGTATATTTGAATAAGAGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATCTATGTGCATCTGCCTAAAAGTATATTTGAATAAGAGCAGTG  100

seq1  CAAGTGTTTCAGGTTATTGAATATGTGCTACACTTGGTAATAGGAAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTTCAGGTTATTGAATATGTGCTACACTTGGTAATAGGAAACCC  150

seq1  TTGAGCATGTCTGAGAAGGTTCCCTTGAAGTTTAACTTACCAAGTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATGTCTGAGAAGGTTCCCTTGAAGTTTAACTTACCAAGTGCTTC  200

seq1  TTATTTAGGGAACAGCTGTCCCTATGGTTATGGTATGAATCTTGTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGGGAACAGCTGTCCCTATGGTTATGGTATGAATCTTGTATTTA  250

seq1  AGGATATGTATTTCCATAAAACATTGCCTTTAAATAGGAGTCAACTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTATTTCCATAAAACATTGCCTTTAAATAGGAGTCAACTACTT  300

seq1  CAGCTGAGACTCAATATGTTGCAGTGCTGCAGGGAAAACTTGGCCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGACTCAATATGTTGCAGTGCTGCAGGGAAAACTTGGCCATGTT  350

seq1  GGACTTGCTGAGAGTCCATATGTCAGTTTCTAACATTATGCCTTCCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCTGAGAGTCCATATGTCAGTTTCTAACATTATGCCTTCCCAAT  400

seq1  CCCTCCTCCTGGGTAACTTTTGACCGTGTGTATGGCTTCATTACCCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCTGGGTAACTTTTGACCGTGTGTATGGCTTCATTACCCAGTC  450

seq1  CCAGTGCATGTAACACTATAATAACAGATAGGAATGATAAAAATGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCATGTAACACTATAATAACAGATAGGAATGATAAAAATGTAGGG  500

seq1  TTTCCTTTTCAAAGATTTTAACAATCCTTTGATCCTAAAGCATAAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCAAAGATTTTAACAATCCTTTGATCCTAAAGCATAAACTAC  550

seq1  TTACAAGTATGTTTGTATCCTTTAAAAAGAGAAGTTTGGATGATTTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTATGTTTGTATCCTTTAAAAAGAGAAGTTTGGATGATTTCTAA  600

seq1  ACAAAATTACAAATACAGTACATTTTAGAAAACAAAGCAGGAAAGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTACAAATACAGTACATTTTAGAAAACAAAGCAGGAAAGAATTT  650

seq1  AATTAATTTTTTGGAAAGATTGAAACTGCTCAATATTAGGCTAATGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTTTGGAAAGATTGAAACTGCTCAATATTAGGCTAATGAAAT  700

seq1  TAACATTCAGTAAGAGAAAGTGGTCAGTTCTGACCAACATGACAAACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAGTAAGAGAAAGTGGTCAGTTCTGACCAACATGACAAACCTG  750

seq1  GCAGGTTAACATAAGTCCTAATCTGTTCAGTAAATTTAATCTCTAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAACATAAGTCCTAATCTGTTCAGTAAATTTAATCTCTAGTGAC  800

seq1  TACAAAAATTTGACCCAGAACCATCCAGAGACTGCCCTACCTGGGAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATTTGACCCAGAACCATCCAGAGACTGCCCTACCTGGGAATCC  850

seq1  ATCCCATAAACAACCACCAAACCCAGGCACTATTGCATATACCAACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATAAACAACCACCAAACCCAGGCACTATTGCATATACCAACAAAA  900

seq1  TTTTGCTGACAGGACCCTGATATAGCTGTCTCCTGTGAGCCTATGCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGACAGGACCCTGATATAGCTGTCTCCTGTGAGCCTATGCCAGT  950

seq1  GCCTGGCAAATACAGAAGTGGATGCTCACAGCCATC-TATTAGAT-GGAA  998
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GCCTGGCAAATACAGAAGTGGATGCTCACAGCCATCTTATTAGATGGGAA  1000

seq1  CATAGGGTCCC-TAATGGAGGAGCTA-GAGAAAGTACCCAAGGAGCTGAA  1046
      ||||||||||| |||||||||||||| |||||||||||||| ||||||||
seq2  CATAGGGTCCCTTAATGGAGGAGCTAGGAGAAAGTACCCAA-GAGCTGAA  1049

seq1  GGGGTCTGCAACCCTATAGGTAGAACAATAA-TATG-AACTAACCAGTAC  1094
      ||||||||||  |||||||||||||  |||| |||| |||| || |||||
seq2  GGGGTCTGCA--CCTATAGGTAGAAACATAATTATGAAACTTACAAGTAC  1097

seq1  CCCCAGA--GCTCA-TGT--CTCTAGCTGCATAT--GTAG-CAG-AGGAT  1135
      |||||||   |||| |||   |||||||||||||   ||| ||| |||||
seq2  CCCCAGAAGCCTCATTGTTCTTCTAGCTGCATATTGTTAGCCAGAAGGAT  1147

seq1  GGCCTAGTCAGCCATCAGTGGGA-GGAGAGGCCCTT  1170
       |||||||||| ||||| ||| | ||||||||||||
seq2  TGCCTAGTCAGGCATCAATGGAAGGGAGAGGCCCTT  1183