BAC Information

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BAC

Clone NameB6Ng01-299E21
Chromosome19 (Build37)16 (Build37)
Map Location 20,637,473 - 20,638,59688,007,043 - 88,008,149
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik
Downstream geneEG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299E21.bB6Ng01-299E21.g
ACCGA094179GA094180
length1,1251,114
definitionB6Ng01-299E21.b B6Ng01-299E21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,637,473 - 20,638,596)(88,007,043 - 88,008,149)
sequence
gaattcacaaatataaggaaattcccttttttggaagacacctaaagatg
gacataaattcaagctactgtttgtgaagaaagaatataaaccggaagat
ggttagtgtgcaaactatctaaagaaataagtagtgagcaagatcctgaa
catacagtgcacaggtgagaaaatataaataaccaatcaacaagaagaaa
aattatcaacctcatgagtaatcgagccatttcaaattaaggtcatacct
gttgtgactaaatgaatgagtttggggaaggatgagaaggaagatactga
acacaaaacaagctgtgatccagtgacactcagagtagaaacatcaacca
acatgggccttccaagtaaacttagatgctagtgatgaaactgcacaaca
taccacttaataaataataattactattataataaataccattattacaa
ggaatgaagtgaaaaatcctagaatggcagaactttgaaggtacagagag
gattccctctttatctgggaagagggaaatgatgtatttgggtttttaag
tcagtgtccagctgaactccaagttaagtgtgctgagagccatgcatgat
ctcgctgctgctgtcagggaagatggtcgtgatgggttctgatggacagg
ctctctgtcttgtgggattacagttgcctacctagcagaagtataccacc
tttgccagccttacagagatataaagatgatataaagatttcatgtctaa
atgtagacatgaaaaactgacacattaaagatgtgtgtttgggaaaaaag
tcatcaaaattcttcatggctttctacttttaaaactgcattgtaggaat
tatgtagagagccttccctttcacccagaattagaggaaggaaggtaata
ttttgtagtcaccgagccttttatgtgtttatttatttggaatatgagaa
attccatctaaattaggagaaaggcatgttaccacagaatactacataag
gcacagcaacataacaacaagactacctagaaatttgagcatctaacaag
aataataatgctaccaaatcatgtggtctgggagttcctctacttcacca
aggcaattttttgggggacctgacc

gaattctctccctaggatacagtctttgaggagttgggtgagttcttcct
gtctctttgcctctgtgctttttcatttcacagctgaagaaaagtatgcg
ttggggagaaggccacaaagaaaggcctgggcaatggcagcagcgcagac
cccctcagcacagctgcagcttcaggctgctctgggccatgctgctgagg
tgaaatgtggaaattgcatatgcatgtgaagaaaggagacttctaggagg
gaaaagtggcatcctgtggctccctgatgacaactcctattcctttcaaa
aaagagtataaagaatagtcagtggctaagggctcagaatacggccttta
aaaggagattatattggaccccgtggttgtgggatgtggaaacgtacagg
agactcatttcctttctgacagtgtctcagacaacctgcctaacccaccc
cagtgtttcctggaatggatggagctgaatgtaagccagagagttatcag
tggatacatagttaaagcagaatgatcatttcagtttttatatataaaga
gcttagcataaaatcatgccactaaaaatattccacattcgagagaaaac
aaactagtcaaaataacacttaacagaaaaaaagctcttaaagacattgt
ctagtaatgaaactgctttctgaaacagtctgacatggtccagctatggg
gagaatagaagttactgaaggcagtggccacacattccttcctgattttc
atttgcagaaagtgtgacatgctcttctaaagatgtcttctagttgctga
ccattcccaagataactgtggactgggcagtagagttgtaatagaacatc
cctgcactgacagatctggatcaagaatgctatactgtcttttaatatag
atttggtccctttttattatttttaatttcaactaagtgtctgtgtctgt
gtgtggctatgtgcaactgaacgaatgtgtatgtggagtctagaagaggc
atgtgagtccccccacctcccagtgtggggtgctgggaactaacccttga
gttcttcctgcagaaacagtctgtgcctcttacccatgagcctttcctct
cccagtcctatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20637473_20638596
seq2: B6Ng01-299E21.b_44_1168

seq1  GAATTCACAAATATAAGGAAATTCCCTTTTTTGGAAGACACCTAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATATAAGGAAATTCCCTTTTTTGGAAGACACCTAAAGATG  50

seq1  GACATAAATTCAAGCTACTGTTTGTGAAGAAAGAATATAAACCGGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAATTCAAGCTACTGTTTGTGAAGAAAGAATATAAACCGGAAGAT  100

seq1  GGTTAGTGTGCAAACTATCTAAAGAAATAAGTAGTGAGCAAGATCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGTGCAAACTATCTAAAGAAATAAGTAGTGAGCAAGATCCTGAA  150

seq1  CATACAGTGCACAGGTGAGAAAATATAAATAACCAATCAACAAGAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTGCACAGGTGAGAAAATATAAATAACCAATCAACAAGAAGAAA  200

seq1  AATTATCAACCTCATGAGTAATCGAGCCATTTCAAATTAAGGTCATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAACCTCATGAGTAATCGAGCCATTTCAAATTAAGGTCATACCT  250

seq1  GTTGTGACTAAATGAATGAGTTTGGGGAAGGATGAGAAGGAAGATACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACTAAATGAATGAGTTTGGGGAAGGATGAGAAGGAAGATACTGA  300

seq1  ACACAAAACAAGCTGTGATCCAGTGACACTCAGAGTAGAAACATCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAAGCTGTGATCCAGTGACACTCAGAGTAGAAACATCAACCA  350

seq1  ACATGGGCCTTCCAAGTAAACTTAGATGCTAGTGATGAAACTGCACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCCTTCCAAGTAAACTTAGATGCTAGTGATGAAACTGCACAACA  400

seq1  TACCACTTAATAAATAATAATTACTATTATAATAAATACCATTATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTAATAAATAATAATTACTATTATAATAAATACCATTATTACAA  450

seq1  GGAATGAAGTGAAAAATCCTAGAATGGCAGAACTTTGAAGGTACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGTGAAAAATCCTAGAATGGCAGAACTTTGAAGGTACAGAGAG  500

seq1  GATTCCCTCTTTATCTGGGAAGAGGGAAATGATGTATTTGGGTTTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCTTTATCTGGGAAGAGGGAAATGATGTATTTGGGTTTTTAAG  550

seq1  TCAGTGTCCAGCTGAACTCCAAGTTAAGTGTGCTGAGAGCCATGCATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCCAGCTGAACTCCAAGTTAAGTGTGCTGAGAGCCATGCATGAT  600

seq1  CTCGCTGCTGCTGTCAGGGAAGATGGTCGTGATGGGTTCTGATGGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGCTGCTGTCAGGGAAGATGGTCGTGATGGGTTCTGATGGACAGG  650

seq1  CTCTCTGTCTTGTGGGATTACAGTTGCCTACCTAGCAGAAGTATACCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTTGTGGGATTACAGTTGCCTACCTAGCAGAAGTATACCACC  700

seq1  TTTGCCAGCCTTACAGAGATATAAAGATGATATAAAGATTTCATGTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGCCTTACAGAGATATAAAGATGATATAAAGATTTCATGTCTAA  750

seq1  ATGTAGACATGAAAAACTGACACATTAAAGATGTGTGTTTGGGAAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACATGAAAAACTGACACATTAAAGATGTGTGTTTGGGAAAAAAG  800

seq1  TCATCAAAATTCTTCATGGCTTTCTACTTTTAAAACTGCATTGTAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAATTCTTCATGGCTTTCTACTTTTAAAACTGCATTGTAGGAAT  850

seq1  TATGTAGAGAGCCTTCCCTTTCACCCAGAATTAGAGGAAGGAAGGTAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAGAGCCTTCCCTTTCACCCAGAATTAGAGGAAGGAAGGTAATA  900

seq1  TTTTGTAGTCACCGAGCCTTTTATGTGTTTATTTATTTGGAATATGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTCACCGAGCCTTTTATGTGTTTATTTATTTGGAATATGAGAA  950

seq1  ATTCCATCTAAATTAGGAGAAAGGCATGTTACCACAGAAATACTAACATA  1000
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  ATTCCATCTAAATTAGGAGAAAGGCATGTTACCACAG-AATACT-ACATA  998

seq1  AGGCAACAGCAACAATAACAACAAAGACTACCTAGAAATTTGAGCATCTA  1050
      |||| |||||||| |||||||| |||||||||||||||||||||||||||
seq2  AGGC-ACAGCAAC-ATAACAAC-AAGACTACCTAGAAATTTGAGCATCTA  1045

seq1  ACAAG-ATAATAATGCTACCAAAATCATGT-GTCT-GGAGT--CTCTACT  1095
      ||||| |||||||||||||| ||||||||| |||| |||||  |||||||
seq2  ACAAGAATAATAATGCTACC-AAATCATGTGGTCTGGGAGTTCCTCTACT  1094

seq1  TCA-CAAGGCAAATTTTT-GGGGAACTGACC  1124
      ||| |||||||| ||||| ||||| ||||||
seq2  TCACCAAGGCAATTTTTTGGGGGACCTGACC  1125


seq1: chr16_88007043_88008149
seq2: B6Ng01-299E21.g_66_1179

seq1  GAATTCTCTCCCTAGGATACAGTCTTTGAGGAGTTGGGTGAGTTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCTAGGATACAGTCTTTGAGGAGTTGGGTGAGTTCTTCCT  50

seq1  GTCTCTTTGCCTCTGTGCTTTTTCATTTCACAGCTGAAGAAAAGTATGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGCCTCTGTGCTTTTTCATTTCACAGCTGAAGAAAAGTATGCG  100

seq1  TTGGGGAGAAGGCCACAAAGAAAGGCCTGGGCAATGGCAGCAGCGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAGGCCACAAAGAAAGGCCTGGGCAATGGCAGCAGCGCAGAC  150

seq1  CCCCTCAGCACAGCTGCAGCTTCAGGCTGCTCTGGGCCATGCTGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGCACAGCTGCAGCTTCAGGCTGCTCTGGGCCATGCTGCTGAGG  200

seq1  TGAAATGTGGAAATTGCATATGCATGTGAAGAAAGGAGACTTCTAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGGAAATTGCATATGCATGTGAAGAAAGGAGACTTCTAGGAGG  250

seq1  GAAAAGTGGCATCCTGTGGCTCCCTGATGACAACTCCTATTCCTTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGCATCCTGTGGCTCCCTGATGACAACTCCTATTCCTTTCAAA  300

seq1  AAAGAGTATAAAGAATAGTCAGTGGCTAAGGGCTCAGAATACGGCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATAAAGAATAGTCAGTGGCTAAGGGCTCAGAATACGGCCTTTA  350

seq1  AAAGGAGATTATATTGGACCCCGTGGTTGTGGGATGTGGAAACGTACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATTATATTGGACCCCGTGGTTGTGGGATGTGGAAACGTACAGG  400

seq1  AGACTCATTTCCTTTCTGACAGTGTCTCAGACAACCTGCCTAACCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATTTCCTTTCTGACAGTGTCTCAGACAACCTGCCTAACCCACCC  450

seq1  CAGTGTTTCCTGGAATGGATGGAGCTGAATGTAAGCCAGAGAGTTATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCCTGGAATGGATGGAGCTGAATGTAAGCCAGAGAGTTATCAG  500

seq1  TGGATACATAGTTAAAGCAGAATGATCATTTCAGTTTTTATATATAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACATAGTTAAAGCAGAATGATCATTTCAGTTTTTATATATAAAGA  550

seq1  GCTTAGCATAAAATCATGCCACTAAAAATATTCCACATTCGAGAGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCATAAAATCATGCCACTAAAAATATTCCACATTCGAGAGAAAAC  600

seq1  AAACTAGTCAAAATAACACTTAACAGAAAAAAAGCTCTTAAAGACATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTCAAAATAACACTTAACAGAAAAAAAGCTCTTAAAGACATTGT  650

seq1  CTAGTAATGAAACTGCTTTCTGAAACAGTCTGACATGGTCCAGCTATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAATGAAACTGCTTTCTGAAACAGTCTGACATGGTCCAGCTATGGG  700

seq1  GAGAATAGAAGTTACTGAAGGCAGTGGCCACACATTCCTTCCTGATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGAAGTTACTGAAGGCAGTGGCCACACATTCCTTCCTGATTTTC  750

seq1  ATTTGCAGAAGGTGTGACATGCTCTTCTAAAGATGTCTTCTAGTTGCTGA  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGAAAGTGTGACATGCTCTTCTAAAGATGTCTTCTAGTTGCTGA  800

seq1  CCATTCCCAAGATAACTGTGGACTGGGCAGTAGAGTTGTAATAGAACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCAAGATAACTGTGGACTGGGCAGTAGAGTTGTAATAGAACATC  850

seq1  CCTGCACTGACAGATCTGGATCAAGAATGCTATACTGTCTTTTAATATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGACAGATCTGGATCAAGAATGCTATACTGTCTTTTAATATAG  900

seq1  ATTTGGTCC--TTTTATTATTTTTAAATTCAACTAAGTGTCTGTGTCTGT  948
      |||||||||  ||||||||||||||| |||||||||||||||||||||||
seq2  ATTTGGTCCCTTTTTATTATTTTTAATTTCAACTAAGTGTCTGTGTCTGT  950

seq1  GTGTGGCTATGTGCAACTGAACGAAGGTGTATGTGGAGTCTAGAAGAGGG  998
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GTGTGGCTATGTGCAACTGAACGAATGTGTATGTGGAGTCTAGAAGA-GG  999

seq1  CATGTGAGT-CCCCCACCTCCCAGTGT-GGGTGCTGGGAACCAAACCCTT  1046
      ||||||||| ||||||||||||||||| |||||||||||| | |||||||
seq2  CATGTGAGTCCCCCCACCTCCCAGTGTGGGGTGCTGGGAA-CTAACCCTT  1048

seq1  GAG-TCTT-CTGCAAGAACAGTCTGTG-CTCTTAACCCCTGAGCCTT--C  1091
      ||| |||| |||||  ||||||||||| ||||| |||| ||||||||  |
seq2  GAGTTCTTCCTGCAGAAACAGTCTGTGCCTCTT-ACCCATGAGCCTTTCC  1097

seq1  TCT-CCAGCCCTATACC  1107
      ||| |||| ||||||||
seq2  TCTCCCAGTCCTATACC  1114


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