BAC Information

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BAC

Clone NameB6Ng01-301G04
Chromosome19 (Build37)
Map Location 59,944,113 - 59,945,161
singlet/doubletsinglet
Overlap genenone
Upstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301G04.bB6Ng01-301G04.g
ACCGA095710GA095711
length1,0541,160
definitionB6Ng01-301G04.b B6Ng01-301G04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagactttgtttcacaactatatacaataaggtgggaaagctatt
gaggaaaaacacccagcactgacccctgacccctggccctatacacacag
ccacacatgagaccaacatttataagtgcacacatagtcgtgtatatggt
catccagaaagtgtagccctccaggctctctttgaattacaagccatatt
aatagaaaatgtgacaccactaccactcactatctagaaggccagggaaa
ttcaagtctcagtgattatttctgaccaacagacagtgcagaaaggaatc
ccaccttatgagctctgactgctcagcctctgcaagttctagctttctct
tataagccaatagctgggaacattttctggataatgaccactccacgaca
gacttaatcactgtcatgttgaaaaatctggatactgctttgggttttgt
tttgttatgttttgttttgttttctgttttttatgtttgttgttgttttg
ccccttctacaaatgacatttcttggagcatccccatatgtattgtttct
caaggatatttggcttccagaactcagatctaacagaaaacataaaaata
ttttctataagatatataatatttatgcttataagttaaatatctgaatg
ggcaaaggtggttgtaaagttggcacgtgtgaagccagtgactgtcaatt
cttgcagagcactcctgccttttcctgaccttccggactcttcatcttgt
tctctctctctctccagacttagtctcttctcctaaattttgtgcctgac
gtttcttcatacacattttaaccatgtacaaatacacacatgcccttgat
cttccttgctctatagtacactgtttataatttttgtgaacatcttgttt
atgttcctggtatccataggtccagatttctctcaagagtgaacttaagg
catgcttctgtcatatatgttaaatgcggcaatttaaatcatacatggtc
tgttatgggcagtatggcagtcaactttcatgatttcctgatgtgttatg
ttca
gaattcaaggcccatacctaaacatgataaaagccatctacagcaagcca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccttaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttctctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactgggtgtatcgtgtagaagaatgcgaatcgatccatacttatct
ctgtactaagtcaaatctagtggatcagactcacataaaaccagagaaca
gtgactaatagaggagaaagtgggggaaagctgagattggcacaggcaaa
gtctgacgaacgcaatgctggtcctgtaggaatcgggataatttgacaaa
ttggggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59944113_59945161
seq2: B6Ng01-301G04.b_49_1102 (reverse)

seq1  TGAACAT-ACACATCAGGGAATCATG-AAGTTGACTGCCATACTGCCCAT  48
      ||||||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  TGAACATAACACATCAGGAAATCATGAAAGTTGACTGCCATACTGCCCAT  50

seq1  AACAGACCATGTATGA-TTAAATTGCCGCATTTAACATATATGACAGAAG  97
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACAGACCATGTATGATTTAAATTGCCGCATTTAACATATATGACAGAAG  100

seq1  CATGCC-TAAGTTCACTC-TGAGAGAAATCTGGACCTATGGATACCAGGA  145
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CATGCCTTAAGTTCACTCTTGAGAGAAATCTGGACCTATGGATACCAGGA  150

seq1  ACATAAACAAGATGTTCACAAAAATTATAAACAGTGTACTATAGAGCAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACAAGATGTTCACAAAAATTATAAACAGTGTACTATAGAGCAAG  200

seq1  GAAGATCAAGGGCATGTGTGTATTTGTACATGGTTAAAATGTGTATGAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCAAGGGCATGTGTGTATTTGTACATGGTTAAAATGTGTATGAAG  250

seq1  AAACGTCAGGCACAAAATTTAGGAGAAGAGACTAAGTCTGGAGAGAGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCAGGCACAAAATTTAGGAGAAGAGACTAAGTCTGGAGAGAGAGA  300

seq1  GAGAACAAGATGAAGAGTCCGGAAGGTCAGGAAAAGGCAGGAGTGCTCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAGATGAAGAGTCCGGAAGGTCAGGAAAAGGCAGGAGTGCTCTG  350

seq1  CAAGAATTGACAGTCACTGGCTTCACACGTGCCAACTTTACAACCACCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTGACAGTCACTGGCTTCACACGTGCCAACTTTACAACCACCTT  400

seq1  TGCCCATTCAGATATTTAACTTATAAGCATAAATATTATATATCTTATAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTCAGATATTTAACTTATAAGCATAAATATTATATATCTTATAG  450

seq1  AAAATATTTTTATGTTTTCTGTTAGATCTGAGTTCTGGAAGCCAAATATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTATGTTTTCTGTTAGATCTGAGTTCTGGAAGCCAAATATC  500

seq1  CTTGAGAAACAATACATATGGGGATGCTCCAAGAAATGTCATTTGTAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACAATACATATGGGGATGCTCCAAGAAATGTCATTTGTAGAA  550

seq1  GGGGCAAAACAACAACAAACATAAAAAACAGAAAACAAAACAAAACATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAACAACAACAAACATAAAAAACAGAAAACAAAACAAAACATAA  600

seq1  CAAAACAAAACCCAAAGCAGTATCCAGATTTTTCAACATGACAGTGATTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACCCAAAGCAGTATCCAGATTTTTCAACATGACAGTGATTA  650

seq1  AGTCTGTCGTGGAGTGGTCATTATCCAGAAAATGTTCCCAGCTATTGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCGTGGAGTGGTCATTATCCAGAAAATGTTCCCAGCTATTGGCT  700

seq1  TATAAGAGAAAGCTAGAACTTGCAGAGGCTGAGCAGTCAGAGCTCATAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGAAAGCTAGAACTTGCAGAGGCTGAGCAGTCAGAGCTCATAAG  750

seq1  GTGGGATTCCTTTCTGCACTGTCTGTTGGTCAGAAATAATCACTGAGACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTCCTTTCTGCACTGTCTGTTGGTCAGAAATAATCACTGAGACT  800

seq1  TGAATTTCCCTGGCCTTCTAGATAGTGAGTGGTAGTGGTGTCACATTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCCCTGGCCTTCTAGATAGTGAGTGGTAGTGGTGTCACATTTTC  850

seq1  TATTAATATGGCTTGTAATTCAAAGAGAGCCTGGAGGGCTACACTTTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATGGCTTGTAATTCAAAGAGAGCCTGGAGGGCTACACTTTCTG  900

seq1  GATGACCATATACACGACTATGTGTGCACTTATAAATGTTGGTCTCATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCATATACACGACTATGTGTGCACTTATAAATGTTGGTCTCATGT  950

seq1  GTGGCTGTGTGTATAGGGCCAGGGGTCAGGGGTCAGTGCTGGGTGTTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGTGTATAGGGCCAGGGGTCAGGGGTCAGTGCTGGGTGTTTTT  1000

seq1  CCTCAATAGCTTTCCCACCTTATTGTATATAGTTGTGAAACAAAGTCTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAGCTTTCCCACCTTATTGTATATAGTTGTGAAACAAAGTCTGA  1050

seq1  ATTC  1049
      ||||
seq2  ATTC  1054