BAC Information

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BAC

Clone NameB6Ng01-301G08
Chromosome19 (Build37)
Map Location 34,839,926 - 34,999,888
singlet/doubletdoublet
Overlap geneLOC676714, Pank1, Mphosph1
Upstream geneEG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12
Downstream geneLOC383464, LOC100042292, A830019P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301G08.bB6Ng01-301G08.g
ACCGA095718GA095719
length1,118992
definitionB6Ng01-301G08.b B6Ng01-301G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,998,782 - 34,999,888)(34,839,926 - 34,840,741)
sequence
gaattcatggtcattctcaggcacatacaagttcctgagcagacccagat
taagtgatagacagagacatagagacatagatatagctacagatccttct
cagaaacagcaaagcccagggcgccagggatgccgagactgaaggggagg
atgagggagagctacaaagagagaccctgcctcagaaatgaaaataaact
ttctcctaactggataaaagtcacagagaggtagagtttgggattaggtg
agtgttccagtggcttctttaaaccagctgtgtgatattctatttctaaa
ttaattaaaataaggtgattctagccagacagtagtggtgcacgccttta
atcccagcactcgggaggcagaggcaggtggatttctgagttcgaggcca
gcctggtctacaaagtgccaggacagccagggctacacagagaaaccctg
tcttgaaaaaacaaacaaacaaacaaacaaaaataatctaccagatgcac
aataccagaaagaaaaggccacctctctcctaatttttcaaagaagcgga
tttaacaatctaaagtacctagcaccgtgattccttggcgcacaataatc
aagtgtttttcttacgttgtacttaccgcagggtttgaggcgactaagga
aaactcatgagagagatcaagcttaacaccatcaaaattgatttccaaag
gccttgcaattgggtcagcactaaaaacgtaagacggtctaggcactcca
tctggattcaagtgagattccatcctgcgagaagaaaagcaacctctgta
agcagccttaataaatcagcacgcaagccgcctacaatgttaagtctact
tggaactcctgggaacttggatgcagttgagctgacagactaccatgcac
aacactctggggttccatcccaggcatacacgggggtatgatgggcatgg
ctctctatactcccaacacgtagggaaggtttgactggaaaatcaccagt
ttccaaggtcaatcttaggcttacatagggtgttccaagaacaatcttaa
agccaagacttgtctcaaagggataaaccaaataaacaaagtagcctcga
atagacagccatgagctc
gaattccaagagaacacaaatagcaaaatgaaataaaagaactaaatata
gtatatgaatgtgaaattcaatgaagaaaaagaaatactaagagtacttt
ggaaattaaaaattcaataagtcaaatgaaagcttcacaaaagtcctcac
taacagaatggatcaagggagagacaaattaccaggccttaattaaaagt
taaaggaattggaccattcagacaatgataaagatatattaacaagaaca
gaccaaagattcattgtccacgggacactgtgaaaagaacaatgacatag
aaagataagacttttgtgataaaagcctaagaactagtatatatctacta
taccaagcaaagctatctgtcacagttaatacagaactgctttctaacat
aaaaaaaaatcacaacccccaagccagcttttctagagatatatggaaga
ggctttcattcagagcaagataaacacatccaggaagctgcaggaaagaa
taaactagtacagagtgtgagttaagcaaacaaggaatagaaagaaatta
caaaatgctgaaagttaatatacacctctaaataattattataactgata
atatcttcaatttccctcaccaacagacacaggttactcgattgcatttt
taaaatgacccatttgttatctccacgaagtgcaactgaacaccaaagac
acaggaaaccttaagattaaaggatggaaaaggtattctaggcaaacaac
ctgggaaagtgcctggtgtcactgtcctaatatggtaggaaataggcttt
aaaccaaaacaggagagataaagaaaatcaattcataacttgttaatggg
aggataatgaagaagatactataattttaaacatatgcaccaaatgcagg
tgcatctgatttcataaatcaacatagtaatgtcttgtatggcatgctgg
tggccaatactgcatactaaaaagaagaactcaaagatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34998782_34999888
seq2: B6Ng01-301G08.b_49_1166 (reverse)

seq1  GAGCTCAT-GCTGTCCTATCGAGCTTACTTTTGTTTATTTTGTT--TTCC  47
      |||||||| ||||||   |||||  ||| ||||||||||| |||  | ||
seq2  GAGCTCATGGCTGTCTATTCGAGGCTAC-TTTGTTTATTTGGTTTATCCC  49

seq1  TTTGAGACAAGGTCTTTGGCTT--AGATTGTTCTTGG-ACACCCTATGTA  94
      |||||||||| ||| |||||||  ||||||||||||| ||||||||||||
seq2  TTTGAGACAA-GTC-TTGGCTTTAAGATTGTTCTTGGAACACCCTATGTA  97

seq1  --GCTAAGA-TGACC-TGGAACTTGGTGATTTTCCAGGTCAACC-TCCCT  139
         |||||| ||||| |||||  ||||||||||||||   |||| |||||
seq2  AGCCTAAGATTGACCTTGGAAACTGGTGATTTTCCAGTCAAACCTTCCCT  147

seq1  ACGTGTTGGGAGTATAGAGAGCCATG-CCATCATA-CCCCGTGTATGCCT  187
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  ACGTGTTGGGAGTATAGAGAGCCATGCCCATCATACCCCCGTGTATGCCT  197

seq1  GGGATGGAA-CCCAGAGTGTTGTGCATGGTAGTCTGTCAGCTCAACTGCA  236
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAACCCCAGAGTGTTGTGCATGGTAGTCTGTCAGCTCAACTGCA  247

seq1  TCCAAGTTCCCAGGAGTTCCAAGTAGACTTAACATTGTAGGCGGCTTGCG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTCCCAGGAGTTCCAAGTAGACTTAACATTGTAGGCGGCTTGCG  297

seq1  TGCTGATTTATTAAGGCTGCTTACAGAGGTTGCTTTTCTTCTCGCAGGAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTATTAAGGCTGCTTACAGAGGTTGCTTTTCTTCTCGCAGGAT  347

seq1  GGAATCTCACTTGAATCCAGATGGAGTGCCTAGACCGTCTTACGTTTTTA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCACTTGAATCCAGATGGAGTGCCTAGACCGTCTTACGTTTTTA  397

seq1  GTGCTGACCCAATTGCAAGGCCTTTGGAAATCAATTTTGATGGTGTTAAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACCCAATTGCAAGGCCTTTGGAAATCAATTTTGATGGTGTTAAG  447

seq1  CTTGATCTCTCTCATGAGTTTTCCTTAGTCGCCTCAAACCCTGCGGTAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTCTCTCATGAGTTTTCCTTAGTCGCCTCAAACCCTGCGGTAAG  497

seq1  TACAACGTAAGAAAAACACTTGATTATTGTGCGCCAAGGAATCACGGTGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGTAAGAAAAACACTTGATTATTGTGCGCCAAGGAATCACGGTGC  547

seq1  TAGGTACTTTAGATTGTTAAATCCGCTTCTTTGAAAAATTAGGAGAGAGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACTTTAGATTGTTAAATCCGCTTCTTTGAAAAATTAGGAGAGAGG  597

seq1  TGGCCTTTTCTTTCTGGTATTGTGCATCTGGTAGATTATTTTTGTTTGTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTTCTTTCTGGTATTGTGCATCTGGTAGATTATTTTTGTTTGTT  647

seq1  TGTTTGTTTGTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  697

seq1  CTGGCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCT  747

seq1  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACTACTGTCTGGCTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACTACTGTCTGGCTA  797

seq1  GAATCACCTTATTTTAATTAATTTAGAAATAGAATATCACACAGCTGGTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCTTATTTTAATTAATTTAGAAATAGAATATCACACAGCTGGTT  847

seq1  TAAAGAAGCCACTGGAACACTCACCTAATCCCAAACTCTACCTCTCTGTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCACTGGAACACTCACCTAATCCCAAACTCTACCTCTCTGTG  897

seq1  ACTTTTATCCAGTTAGGAGAAAGTTTATTTTCATTTCTGAGGCAGGGTCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATCCAGTTAGGAGAAAGTTTATTTTCATTTCTGAGGCAGGGTCT  947

seq1  CTCTTTGTAGCTCTCCCTCATCCTCCCCTTCAGTCTCGGCATCCCTGGCG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAGCTCTCCCTCATCCTCCCCTTCAGTCTCGGCATCCCTGGCG  997

seq1  CCCTGGGCTTTGCTGTTTCTGAGAAGGATCTGTAGCTATATCTATGTCTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCTTTGCTGTTTCTGAGAAGGATCTGTAGCTATATCTATGTCTC  1047

seq1  TATGTCTCTGTCTATCACTTAATCTGGGTCTGCTCAGGAACTTGTATGTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTGTCTATCACTTAATCTGGGTCTGCTCAGGAACTTGTATGTG  1097

seq1  CCTGAGAATGACCATGAATTC  1107
      |||||||||||||||||||||
seq2  CCTGAGAATGACCATGAATTC  1118

seq1: chr19_34839926_34840741
seq2: B6Ng01-301G08.g_67_882

seq1  GAATTCCAAGAGAACACAAATAGCAAAATGAAATAAAAGAACTAAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAGAACACAAATAGCAAAATGAAATAAAAGAACTAAATATA  50

seq1  GTATATGAATGTGAAATTCAATGAAGAAAAAGAAATACTAAGAGTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAATGTGAAATTCAATGAAGAAAAAGAAATACTAAGAGTACTTT  100

seq1  GGAAATTAAAAATTCAATAAGTCAAATGAAAGCTTCACAAAAGTCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAAAAATTCAATAAGTCAAATGAAAGCTTCACAAAAGTCCTCAC  150

seq1  TAACAGAATGGATCAAGGGAGAGACAAATTACCAGGCCTTAATTAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAATGGATCAAGGGAGAGACAAATTACCAGGCCTTAATTAAAAGT  200

seq1  TAAAGGAATTGGACCATTCAGACAATGATAAAGATATATTAACAAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATTGGACCATTCAGACAATGATAAAGATATATTAACAAGAACA  250

seq1  GACCAAAGATTCATTGTCCACGGGACACTGTGAAAAGAACAATGACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGATTCATTGTCCACGGGACACTGTGAAAAGAACAATGACATAG  300

seq1  AAAGATAAGACTTTTGTGATAAAAGCCTAAGAACTAGTATATATCTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAGACTTTTGTGATAAAAGCCTAAGAACTAGTATATATCTACTA  350

seq1  TACCAAGCAAAGCTATCTGTCACAGTTAATACAGAACTGCTTTCTAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCAAAGCTATCTGTCACAGTTAATACAGAACTGCTTTCTAACAT  400

seq1  AAAAAAAAATCACAACCCCCAAGCCAGCTTTTCTAGAGATATATGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCACAACCCCCAAGCCAGCTTTTCTAGAGATATATGGAAGA  450

seq1  GGCTTTCATTCAGAGCAAGATAAACACATCCAGGAAGCTGCAGGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCATTCAGAGCAAGATAAACACATCCAGGAAGCTGCAGGAAAGAA  500

seq1  TAAACTAGTACAGAGTGTGAGTTAAGCAAACAAGGAATAGAAAGAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGTACAGAGTGTGAGTTAAGCAAACAAGGAATAGAAAGAAATTA  550

seq1  CAAAATGCTGAAAGTTAATATACACCTCTAAATAATTATTATAACTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCTGAAAGTTAATATACACCTCTAAATAATTATTATAACTGATA  600

seq1  ATATCTTCAATTTCCCTCACCAACAGACACAGGTTACTCGATTGCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCAATTTCCCTCACCAACAGACACAGGTTACTCGATTGCATTTT  650

seq1  TAAAATGACCCATTTGTTATCTCCACGAAGTGCAACTGAACACCAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGACCCATTTGTTATCTCCACGAAGTGCAACTGAACACCAAAGAC  700

seq1  ACAGGAAACCTTAAGATTAAAGGATGGAAAAGGTATTCTAGGCAAACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACCTTAAGATTAAAGGATGGAAAAGGTATTCTAGGCAAACAAC  750

seq1  CTGGGAAAGTGCCTGGTGTCACTGTCCTAATATGGTAGGAAATAGGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGTGCCTGGTGTCACTGTCCTAATATGGTAGGAAATAGGCTTT  800

seq1  AAACCAAAACAGGAGA  816
      ||||||||||||||||
seq2  AAACCAAAACAGGAGA  816