BAC Information

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BAC

Clone NameB6Ng01-301N02
Chromosome19 (Build37)
Map Location 27,326,258 - 27,327,406
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr
Downstream geneLOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N02.bB6Ng01-301N02.g
ACCGA096033GA096034
length7201,154
definitionB6Ng01-301N02.b B6Ng01-301N02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctgatcaaataaaacttcccgctgaaaatattttcccatagtc
atccacctagacatactgacatcactgtagctttgatccaaaggggccag
actccatctgaagcttgttgtagaagtttgctgcagcagccaaggtgaat
actggttttataggcatatgagatgcaacagtgagggaccaatggagtct
tgagacaaggcttcaaaagatcactgaggccaggccctgaaaagatgttt
ttgtgacgttctgaagatgaagtctaaggtacagtggagattctacagtg
gtgctgatttcaggacagtagaccatcttccaacgtgaacagcaggtggg
aatggagctggcccaagagataagctttgtgtgctgtgggtagaagagct
gggggagcagggcaaaccaagacctttggagcccagatgagagtcatgag
tcccagatgctggataagtagctgcagagtcttgtggtctggagggttga
gttgaagtcttgctttgttctaatttttctttcgtatgtttccattgcct
ctttttggaatggaaatctttactctgtgccattgtatattagaagtgtg
taacttctaatgatttaaaaaaattttttacaggagtccctgtaaaatgc
aatcacaagattgcactgagtgtcagaaaagactttggacctttatagtt
ttgatgggggggggggggga
gaattcctatcatctccatcctacagagatgcttagtaatttgccctctc
taggacccctgggacagagaagcatgtgttattgacaattcgtagagctc
taaacacacacccagctgcccatctgactttgctcccaagcacagtcaaa
aagaaagccatccttgaaatatcccagagttactaccgagcccagactcc
ccacactcttcctgtctcacacttgtcccagggtcaacacagacacacaa
cagggaaacttaaatggattctaaatctgtggccccacttcattcctgtg
tcttggaggaaccaggctcagaaacacaaacagattgaagtgacactgta
aagagatgggacctctgatcacaaccctcaacttaggagtccctagtcct
tagggcaaaagaattacaattggctctccatcggtaaaggtcgatgggaa
tgagattcctacaaacatgattattatccttcccaggaagctcttgtgaa
ctggagacctccgtgctggacatgagaaaaccaagtaaacaaacaaaaac
caacgacaaaacccacaaagactgtctcattttcaaagccattttccttt
ctccttgaaagcaagactctcttgcagagttttttccatttctggaattt
gacaagcttaagagtctagaatatggacgaaatcaggccacagttctcag
tctttccaaagagggcaaaacatcggctttagaaatgaagggcacaacat
ctgaactaggagtagcatttttttgttgtttgttttgttcttgaaattag
gtaagcaaaagggtgtatgatttttttttttttaatttgtttgctttgcc
acaggtaaagaaagtagcgtgatgttcatttgggtttaaagggaacatac
tgttcttattggggaaagattttactagggaagaatgctaggaaatcagt
tcttcttttagcaatgcgatgcacaggaagcccaagtagcattctttgag
ggtggagcgaagacagtaaaaggctaggaatattgggtgggtctcagatt
tctgcaagatccatgactgaagcgagtctttataactgggtcagttaggt
aagctgtttaaacctgctggctcatgggaaggggattctgacttccaata
ataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27326258_27327406
seq2: B6Ng01-301N02.g_68_1221 (reverse)

seq1  TTATTATTGGAAGTCAGATACCCCCTCTCCAAAGTGAGCAGGCAGGTTTT  50
      |||||||||||||||||| | |||||  |||   |||||  ||||| |||
seq2  TTATTATTGGAAGTCAGA-ATCCCCTTCCCA---TGAGCCAGCAGG-TTT  45

seq1  AAACAGCTTAACT-ACTGA-CCAGTTAT-AAGACTCGCTTTTCAGTCATG  97
      |||||||||| || ||||| |||||||| |||||||||  ||||||||||
seq2  AAACAGCTTACCTAACTGACCCAGTTATAAAGACTCGC--TTCAGTCATG  93

seq1  GATCCTGCAGAAATCTGAGACCCACCC-ATA-TCCTAGCTTTTAACTGTC  145
      |||| |||||||||||||||||||||| ||| ||||||| ||| ||||||
seq2  GATCTTGCAGAAATCTGAGACCCACCCAATATTCCTAGCCTTTTACTGTC  143

seq1  TTCGCTCCACCCTCAAAG-ATGCTAC-TGGGCTTCCTGTGCATCGCATTG  193
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TTCGCTCCACCCTCAAAGAATGCTACTTGGGCTTCCTGTGCATCGCATTG  193

seq1  CTAAA--GAGAACTGATTTCCTAGCATTCTTCCCTAGTAAAATCTTT-CC  240
      |||||   ||||||||||||||||||||||||||||||||||||||| ||
seq2  CTAAAAGAAGAACTGATTTCCTAGCATTCTTCCCTAGTAAAATCTTTCCC  243

seq1  CAAT-AGAACAGTATGTTCCC-TTAAACCCAAATGAACATCACGCTACTT  288
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAATAAGAACAGTATGTTCCCTTTAAACCCAAATGAACATCACGCTACTT  293

seq1  TCTTTTACCTGTGGCAAAGCAAACAAATT-AAAAAAAAAAAATCATACAC  337
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TC-TTTACCTGTGGCAAAGCAAACAAATTAAAAAAAAAAAAATCATACAC  342

seq1  CCTTTTGCTTACCTAATTTCAAGAACAAAACAAACAACAAAAAAATGCTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTTACCTAATTTCAAGAACAAAACAAACAACAAAAAAATGCTA  392

seq1  CTCCTAGTTCAGATGTTGTGCCCTTCATTTCTAAAGCCGATGTTTTGCCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTTCAGATGTTGTGCCCTTCATTTCTAAAGCCGATGTTTTGCCC  442

seq1  TCTTTGGAAAGACTGAGAACTGTGGCCTGATTTCGTCCATATTCTAGACT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAAAGACTGAGAACTGTGGCCTGATTTCGTCCATATTCTAGACT  492

seq1  CTTAAGCTTGTCAAATTCCAGAAATGGAAAAAACTCTGCAAGAGAGTCTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTTGTCAAATTCCAGAAATGGAAAAAACTCTGCAAGAGAGTCTT  542

seq1  GCTTTCAAGGAGAAAGGAAAATGGCTTTGAAAATGAGACAGTCTTTGTGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGGAGAAAGGAAAATGGCTTTGAAAATGAGACAGTCTTTGTGG  592

seq1  GTTTTGTCGTTGGTTTTTGTTTGTTTACTTGGTTTTCTCATGTCCAGCAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCGTTGGTTTTTGTTTGTTTACTTGGTTTTCTCATGTCCAGCAC  642

seq1  GGAGGTCTCCAGTTCACAAGAGCTTCCTGGGAAGGATAATAATCATGTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTCCAGTTCACAAGAGCTTCCTGGGAAGGATAATAATCATGTTT  692

seq1  GTAGGAATCTCATTCCCATCGACCTTTACCGATGGAGAGCCAATTGTAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATCTCATTCCCATCGACCTTTACCGATGGAGAGCCAATTGTAAT  742

seq1  TCTTTTGCCCTAAGGACTAGGGACTCCTAAGTTGAGGGTTGTGATCAGAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCCCTAAGGACTAGGGACTCCTAAGTTGAGGGTTGTGATCAGAG  792

seq1  GTCCCATCTCTTTACAGTGTCACTTCAATCTGTTTGTGTTTCTGAGCCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCTCTTTACAGTGTCACTTCAATCTGTTTGTGTTTCTGAGCCTG  842

seq1  GTTCCTCCAAGACACAGGAATGAAGTGGGGCCACAGATTTAGAATCCATT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCAAGACACAGGAATGAAGTGGGGCCACAGATTTAGAATCCATT  892

seq1  TAAGTTTCCCTGTTGTGTGTCTGTGTTGACCCTGGGACAAGTGTGAGACA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCCCTGTTGTGTGTCTGTGTTGACCCTGGGACAAGTGTGAGACA  942

seq1  GGAAGAGTGTGGGGAGTCTGGGCTCGGTAGTAACTCTGGGATATTTCAAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTGTGGGGAGTCTGGGCTCGGTAGTAACTCTGGGATATTTCAAG  992

seq1  GATGGCTTTCTTTTTGACTGTGCTTGGGAGCAAAGTCAGATGGGCAGCTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTCTTTTTGACTGTGCTTGGGAGCAAAGTCAGATGGGCAGCTG  1042

seq1  GGTGTGTGTTTAGAGCTCTACGAATTGTCAATAACACATGCTTCTCTGTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTTTAGAGCTCTACGAATTGTCAATAACACATGCTTCTCTGTC  1092

seq1  CCAGGGGTCCTAGAGAGGGCAAATTACTAAGCATCTCTGTAGGATGGAGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTCCTAGAGAGGGCAAATTACTAAGCATCTCTGTAGGATGGAGA  1142

seq1  TGATAGGAATTC  1149
      ||||||||||||
seq2  TGATAGGAATTC  1154