BAC Information

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BAC

Clone NameB6Ng01-302C20
Chromosome19 (Build37)
Map Location 8,893,754 - 9,031,490
singlet/doubletdoublet
Overlap geneTtc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1
Upstream geneLOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3
Downstream geneEef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302C20.bB6Ng01-302C20.g
ACCGA096296GA096297
length1,1451,003
definitionB6Ng01-302C20.b B6Ng01-302C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,030,348 - 9,031,490)(8,893,754 - 8,894,752)
sequence
gaattcagttcccaacacaccaaacagcttgccaccacctgtaactccag
ctccatacaatccaatggcctcctctggcctggcacctgtacttacatac
acatgccctcacacagacacccacccacaaacattaataataataattca
tgttggggtaaagtgcttgccaccaaacctgaccctgatttcaatcccct
gaatacaaaatatgacagaacagaatcccaacattgtcctctgacccccg
catttgcaccattgaccacacaggtgcacacacaatacaattttaaaaag
aatacatgttgggcttagaatgcagctcattgataaagttgtgtgcataa
aatcttggatttaagccttaacaccaaaatataataattttttttaaaaa
tgcctattactactaatataaacacacacactctaataattaaccctgtc
ttcaaggaacttactatctaggattaccaacaatatgacagctaggctgc
tgtgatttgggtgagctgaacataactaaatatattttttcttttcttta
aggtaaggtaaaacattagcaggaacaaggcaaacatggctgcttgtgga
tgaaaacacatgttctcttatgtcttctgttccataaagaggcattctgt
agagtagtaaagactgtagtgtcagcatgaagacatattcagatgaagaa
aaagaaactgataccaacaaatccctatgtccagtcaactagttttcaag
tggataataagaccactgggaaaagaatggccttatagatatactgggtc
acctgatagtcaaaagcaaaaggatggtggacccttaccgcatccttatc
ataacaaaaaaattactcagatctcaccagcacacaggcatgaatcacag
acaggcagtgatgggataactgatatggggatggtttgtagagataaagg
ccactttcctagcattcaaaagtaccaggttcaatccctagaactaaaaa
acaacagagagaaagaaaaaaaatggggggggggggcgagtccaaaagaa
taggcaatgcctttaatggtctagcctttaaattccagacccaggaggcg
aaagcaagtgaagtttcttgtgagttccagccagccttgtctaga
gtttaagttgcaggagcacagagaggaagagaccagacctgccagcagtt
tagcctctaacggggcacgcgcattgcgtcatgccacccaatcagaaagg
agtctagaaaagtaatcccgcagaaccggccccgcctccccagcggacca
acccggaaaaaaaaaattcccggccacttctccaataggaaaaaaagccg
cacgatatcggaggaccaatcagagcaacagactacgattcaagctggcc
aacgagagaaggaaggggtggggttggcgcctctgttgctgggtagatgt
ttaagcacagaaagaggtcccggcattgctctctccctctctctctctcc
cttgatgctggaaaggcctttccctcctggctacgaaaaccctgcaccac
ccatccttccagcttggcttcggttactagtctcagaagttacagtcaaa
gaataagcaagagaggacatcgagtaagccctagggtgctccggtaattg
ggagcgggcaggaagtaagagacctgagatgggcgggactccggcgcgac
tgcgcagagcctacgactgaagtacggaaagaggagcgcgctcacgcttc
cgtgctacgaggcacttgagccgcagccagccttgcccgactcaggcccc
tgtgcggctgcgcggttaggccgcttgcgctgattggcccggatctctga
gaggagggaggggaagtgagggaactccgtcgtcctcggcgcgcactccc
ccgcggtcgagtacagagtgtgtcggaagctgctcctcgccgtcttgttt
tgcgctcagtgagccgaaaggggcagggcaggaggaaggcgacataaaca
cgccgcgaagacagcgcggcctctgcctctgtgtgcgtgcgcttgctagc
gcgggctcagtgcttggcgcgggaggcgggaggcgggccggcggccggcg
cctgcgcggtcgggctcggtcgacagtttcgcaggggagaggccgcggga
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9030348_9031490
seq2: B6Ng01-302C20.b_45_1189 (reverse)

seq1  TCTAGACCAGGCTGGCCTTGAACTCAC-AGAAAC-TCACTTGCTTCCGCC  48
      ||||||| ||||||| || |||||||| |||||| |||||||||| ||||
seq2  TCTAGACAAGGCTGG-CTGGAACTCACAAGAAACTTCACTTGCTTTCGCC  49

seq1  TCCTTGGTCTTGGAATTAAAGGCT-GA-CATTAAAGGCATTTGCCCTATT  96
      |||| ||||| | | ||||||||| || |||||||||||||   ||||||
seq2  TCCTGGGTCTGGAATTTAAAGGCTAGACCATTAAAGGCATT--GCCTATT  97

seq1  CTTTGGACCTCGCCCCCCCCCCC--TTTTTTTTCTTTTCTCTCTGTTGTT  144
      |||| |  |||||||||||||||  ||||||||| |||||||||||||||
seq2  CTTTTGGACTCGCCCCCCCCCCCCATTTTTTTTC-TTTCTCTCTGTTGTT  146

seq1  TTTTAGTTCTAGGGATTGAACCTGGGTACTTTTGAATGCTAGGAAAGTGG  194
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTAGTTCTAGGGATTGAACCT-GGTACTTTTGAATGCTAGGAAAGTGG  195

seq1  CCTTTATCTCTACAAACCATCCCCATATCAGTTAT-CCATCACTGCCTGT  243
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTTATCTCTACAAACCATCCCCATATCAGTTATCCCATCACTGCCTGT  245

seq1  CTGTGATTCATGCCTGTGTGCTGGTGAGATCTGAGTAATTTTTTTGTTAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCATGCCTGTGTGCTGGTGAGATCTGAGTAATTTTTTTGTTAT  295

seq1  GATAAGGATGCGGTAAGGGTCCACCATCCTTTTGCTTTTGACTATCAGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGATGCGGTAAGGGTCCACCATCCTTTTGCTTTTGACTATCAGGT  345

seq1  GACCCAGTATATCTATAAGGCCATTCTTTTCCCAGTGGTCTTATTATCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGTATATCTATAAGGCCATTCTTTTCCCAGTGGTCTTATTATCCA  395

seq1  CTTGAAAACTAGTTGACTGGACATAGGGATTTGTTGGTATCAGTTTCTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACTAGTTGACTGGACATAGGGATTTGTTGGTATCAGTTTCTTT  445

seq1  TTCTTCATCTGAATATGTCTTCATGCTGACACTACAGTCTTTACTACTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCTGAATATGTCTTCATGCTGACACTACAGTCTTTACTACTCT  495

seq1  ACAGAATGCCTCTTTATGGAACAGAAGACATAAGAGAACATGTGTTTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGCCTCTTTATGGAACAGAAGACATAAGAGAACATGTGTTTTCA  545

seq1  TCCACAAGCAGCCATGTTTGCCTTGTTCCTGCTAATGTTTTACCTTACCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGCAGCCATGTTTGCCTTGTTCCTGCTAATGTTTTACCTTACCT  595

seq1  TAAAGAAAAGAAAAAATATATTTAGTTATGTTCAGCTCACCCAAATCACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGAAAAAATATATTTAGTTATGTTCAGCTCACCCAAATCACA  645

seq1  GCAGCCTAGCTGTCATATTGTTGGTAATCCTAGATAGTAAGTTCCTTGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGCTGTCATATTGTTGGTAATCCTAGATAGTAAGTTCCTTGAA  695

seq1  GACAGGGTTAATTATTAGAGTGTGTGTGTTTATATTAGTAGTAATAGGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTAATTATTAGAGTGTGTGTGTTTATATTAGTAGTAATAGGCA  745

seq1  TTTTTAAAAAAAATTATTATATTTTGGTGTTAAGGCTTAAATCCAAGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAAATTATTATATTTTGGTGTTAAGGCTTAAATCCAAGATT  795

seq1  TTATGCACACAACTTTATCAATGAGCTGCATTCTAAGCCCAACATGTATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACACAACTTTATCAATGAGCTGCATTCTAAGCCCAACATGTATT  845

seq1  CTTTTTAAAATTGTATTGTGTGTGCACCTGTGTGGTCAATGGTGCAAATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAATTGTATTGTGTGTGCACCTGTGTGGTCAATGGTGCAAATG  895

seq1  CGGGGGTCAGAGGACAATGTTGGGATTCTGTTCTGTCATATTTTGTATTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGTCAGAGGACAATGTTGGGATTCTGTTCTGTCATATTTTGTATTC  945

seq1  AGGGGATTGAAATCAGGGTCAGGTTTGGTGGCAAGCACTTTACCCCAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTGAAATCAGGGTCAGGTTTGGTGGCAAGCACTTTACCCCAACA  995

seq1  TGAATTATTATTATTAATGTTTGTGGGTGGGTGTCTGTGTGAGGGCATGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTATTATTAATGTTTGTGGGTGGGTGTCTGTGTGAGGGCATGT  1045

seq1  GTATGTAAGTACAGGTGCCAGGCCAGAGGAGGCCATTGGATTGTATGGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAGTACAGGTGCCAGGCCAGAGGAGGCCATTGGATTGTATGGAG  1095

seq1  CTGGAGTTACAGGTGGTGGCAAGCTGTTTGGTGTGTTGGGAACTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACAGGTGGTGGCAAGCTGTTTGGTGTGTTGGGAACTGAATTC  1145

seq1: chr19_8893754_8894752
seq2: B6Ng01-302C20.g_73_1075

seq1  GTTTAAGTTGCAGGAGCACAGAGAGGAAGAGACCAGACCTGCCAGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTTGCAGGAGCACAGAGAGGAAGAGACCAGACCTGCCAGCAGTT  50

seq1  TAGCCTCTAACGGGGCACGCGCATTGCGTCATGCCACCCAATCAGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTAACGGGGCACGCGCATTGCGTCATGCCACCCAATCAGAAAGG  100

seq1  AGTCTAGAAAAGTAATCCCGCAGAACCGGCCCCGCCTCCCCAGCGGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAAAGTAATCCCGCAGAACCGGCCCCGCCTCCCCAGCGGACCA  150

seq1  ACCCGGAAAAAAAAAATTCCCGGCCACTTCTCCAATAGGAAAAAAAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGAAAAAAAAAATTCCCGGCCACTTCTCCAATAGGAAAAAAAGCCG  200

seq1  CACGATATCGGAGGACCAATCAGAGCAACAGACTACGATTCAAGCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATATCGGAGGACCAATCAGAGCAACAGACTACGATTCAAGCTGGCC  250

seq1  AACGAGAGAAGGAAGGGGTGGGGTTGGCGCCTCTGTTGCTGGGTAGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGAGAAGGAAGGGGTGGGGTTGGCGCCTCTGTTGCTGGGTAGATGT  300

seq1  TTAAGCACAGAAAGAGGTCCCGGCATTGCTCTCTCCCTCTCTCTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACAGAAAGAGGTCCCGGCATTGCTCTCTCCCTCTCTCTCTCTCC  350

seq1  CTTGATGCTGGAAAGGCCTTTCCCTCCTGGCTACGAAAACCCTGCACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCTGGAAAGGCCTTTCCCTCCTGGCTACGAAAACCCTGCACCAC  400

seq1  CCATCCTTCCAGCTTGGCTTCGGTTACTAGTCTCAGAAGTTACAGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTCCAGCTTGGCTTCGGTTACTAGTCTCAGAAGTTACAGTCAAA  450

seq1  GAATAAGCAAGAGAGGACATCGAGTAAGCCCTAGGGTGCTCCGGTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCAAGAGAGGACATCGAGTAAGCCCTAGGGTGCTCCGGTAATTG  500

seq1  GGAGCGGGCAGGAAGTAAGAGACCTGAGATGGGCGGGACTCCGGCGCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGGCAGGAAGTAAGAGACCTGAGATGGGCGGGACTCCGGCGCGAC  550

seq1  TGCGCAGAGCCTACGACTGAAGTACGGAAAGAGGAGCGCGCTCACGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGAGCCTACGACTGAAGTACGGAAAGAGGAGCGCGCTCACGCTTC  600

seq1  CGTGCTACGAGGCACTTGAGCCGCAGCCAGCCTTGCCCGACTCAGGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTACGAGGCACTTGAGCCGCAGCCAGCCTTGCCCGACTCAGGCCCC  650

seq1  TGTGCGGCTGCGCGGTTAGGCCGCTTGCGCTGATTGGCCCGGATCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGCTGCGCGGTTAGGCCGCTTGCGCTGATTGGCCCGGATCTCTGA  700

seq1  GAGGAGGGAGGGGAAGTGAGGGAACTCCGTCGTCCTCGGCGCGCACTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGAGGGGAAGTGAGGGAACTCCGTCGTCCTCGGCGCGCACTCCC  750

seq1  CCGCGGTCGAGTACAGAGTGTGTCGGAAGCTGCTCCTCGCCGTCTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGTCGAGTACAGAGTGTGTCGGAAGCTGCTCCTCGCCGTCTTGTTT  800

seq1  TGCGCTCAGTGAGCCGAAAGGGGCAGGGCAGGAGGAAGGCGACATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTCAGTGAGCCGAAAGGGGCAGGGCAGGAGGAAGGCGACATAAACA  850

seq1  CGCCGCGAAGACAGCGCGGCCTCTGCCTCTGTGTGCGTGCGCTTGCTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGAAGACAGCGCGGCCTCTGCCTCTGTGTGCGTGCGCTTGCTAGC  900

seq1  GCGGGCTCAGTGC-TGGCGCGGGAGGC-GGAGGCGGG-CGGCGG-CGGCG  946
      ||||||||||||| ||||||||||||| ||||||||| |||||| |||||
seq2  GCGGGCTCAGTGCTTGGCGCGGGAGGCGGGAGGCGGGCCGGCGGCCGGCG  950

seq1  CCTGCGCGGTCGGGCTCGGTCGACAG-TTCGCAGGGGAGGAGGCGGCGGG  995
      |||||||||||||||||||||||||| ||||||||||| ||||| |||||
seq2  CCTGCGCGGTCGGGCTCGGTCGACAGTTTCGCAGGGGA-GAGGCCGCGGG  999

seq1  AGGC  999
      ||||
seq2  AGGC  1003