BAC Information

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BAC

Clone NameB6Ng01-302N05
Chromosome19 (Build37)
Map Location 6,948,703 - 7,130,795
singlet/doubletdoublet
Overlap genePrdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
Upstream genePola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88
Downstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302N05.bB6Ng01-302N05.g
ACCGA096778GA096779
length886295
definitionB6Ng01-302N05.b B6Ng01-302N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,948,703 - 6,949,588)(7,130,503 - 7,130,795)
sequence
gaattcccactggaagataaagacaatgagcctccagctaggtgtgctgg
ggcaggcctgtgatcttagtaccaaggagatggagtcagaggataaggag
ttcaaagtcatccactcctcggctacatagcaaatttgaggccagcctgg
gctgcatgagattgtcaaaagaataagaggctggagagatgactcagagg
ttaagagccctgcctactcttccaaagggcctgtatccaattcccagagc
ccatgtgacagttgtatctccagtttcagaagatccaaagccctcttctg
gcctccaaggacagtgcacacatatgctgcacaaatatgcaagcaggcaa
aacacataaaataaaaataaaataaaaacacataaaataaaacatttttc
aattttcttgatttaaaaaaaaaaaaaaaagagcacttgctgctcttgca
gagagaggatccaggttcccttccaagcacccatgtggcagctcatagct
gtctgtaattccagctccaagggatctgatgctctcttctcatttccaag
agcaccaggcaggcacacagtacatacgtttatgccgggaaaactctcat
acacgtaaacaaaaataaaaaggaaggaaggaagggagcaccacggtacc
acatggtacacacttacagtcccaactgaggcagggggatcatgtgagct
cagagttcaagatttgcttgggcaaaatagtgagaacctatgcaagccag
gcggtggtggcgcatgcctttaatcccagcacttgggaggcagaggcagg
cagatttctgagttcgaggccaacctggtctacaaagtgagttccagggc
agccacggatacacagagacagaggtgggggtggga
cacagcagctcacaagacattagtgagatttgacaggaagaaacctaggt
gtcaaataggcatggtaaggcatacttacaatccagcattccagagggtg
agggcggaggatcttaggaaagtttaggatcagcctgacttacaaggcag
ccacatagcaagaccctgtctcagtcaataggtcagtctaacaatcaata
taaaaaagagccgggcagtggtggcttatgttttttaatcccagcacttg
ggaggaataggcaagctgatttctgagttcgaggctagcctggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6948703_6949588
seq2: B6Ng01-302N05.b_47_932

seq1  GAATTCCCACTGGAAGATAAAGACAATGAGCCTCCAGCTAGGTGTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGGAAGATAAAGACAATGAGCCTCCAGCTAGGTGTGCTGG  50

seq1  GGCAGGCCTGTGATCTTAGTACCAAGGAGATGGAGTCAGAGGATAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCTGTGATCTTAGTACCAAGGAGATGGAGTCAGAGGATAAGGAG  100

seq1  TTCAAAGTCATCCACTCCTCGGCTACATAGCAAATTTGAGGCCAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCATCCACTCCTCGGCTACATAGCAAATTTGAGGCCAGCCTGG  150

seq1  GCTGCATGAGATTGTCAAAAGAATAAGAGGCTGGAGAGATGACTCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGAGATTGTCAAAAGAATAAGAGGCTGGAGAGATGACTCAGAGG  200

seq1  TTAAGAGCCCTGCCTACTCTTCCAAAGGGCCTGTATCCAATTCCCAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCCCTGCCTACTCTTCCAAAGGGCCTGTATCCAATTCCCAGAGC  250

seq1  CCATGTGACAGTTGTATCTCCAGTTTCAGAAGATCCAAAGCCCTCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGACAGTTGTATCTCCAGTTTCAGAAGATCCAAAGCCCTCTTCTG  300

seq1  GCCTCCAAGGACAGTGCACACATATGCTGCACAAATATGCAAGCAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGGACAGTGCACACATATGCTGCACAAATATGCAAGCAGGCAA  350

seq1  AACACATAAAATAAAAATAAAATAAAAACACATAAAATAAAACATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAAAATAAAAATAAAATAAAAACACATAAAATAAAACATTTTTC  400

seq1  AATTTTCTTGATTTAAAAAAAAAAAAAAAAGAGCACTTGCTGCTCTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTGATTTAAAAAAAAAAAAAAAAGAGCACTTGCTGCTCTTGCA  450

seq1  GAGAGAGGATCCAGGTTCCCTTCCAAGCACCCATGTGGCAGCTCATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGATCCAGGTTCCCTTCCAAGCACCCATGTGGCAGCTCATAGCT  500

seq1  GTCTGTAATTCCAGCTCCAAGGGATCTGATGCTCTCTTCTCATTTCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAATTCCAGCTCCAAGGGATCTGATGCTCTCTTCTCATTTCCAAG  550

seq1  AGCACCAGGCAGGCACACAGTACATACGTTTATGCCGGGAAAACTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGCAGGCACACAGTACATACGTTTATGCCGGGAAAACTCTCAT  600

seq1  ACACGTAAACAAAAATAAAAAGGAAGGAAGGAAGGGAGCACCACGGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTAAACAAAAATAAAAAGGAAGGAAGGAAGGGAGCACCACGGTACC  650

seq1  ACATGGTACACACTTACAGTCCCAACTGAGGCAGGGGGATCATGTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTACACACTTACAGTCCCAACTGAGGCAGGGGGATCATGTGAGCT  700

seq1  CAGAGTTCAAGATTTGCTTGGGCAAAATAGTGAGAACCTATGCAAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAAGATTTGCTTGGGCAAAATAGTGAGAACCTATGCAAGCCAG  750

seq1  GCGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  800

seq1  CAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGC  850

seq1  AGCCACGGATACACAGAGACAGAGGTGGGGGTGGGA  886
      ||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGATACACAGAGACAGAGGTGGGGGTGGGA  886

seq1: chr19_7130503_7130795
seq2: B6Ng01-302N05.g_74_367 (reverse)

seq1  ACCAGGCTAGCCTCGAACTCAGAAATCAGCTTGCCTCTGCCTCCCAAGTG  50
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  ACCAGGCTAGCCTCGAACTCAGAAATCAGCTTGCCTATTCCTCCCAAGTG  50

seq1  CTGGGATT-AAAGGCATACGCCACCACTGCCCGGCTCTTTTTTATATTGA  99
      |||||||| |||  |||| |||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAAAACATAAGCCACCACTGCCCGGCTCTTTTTTATATTGA  100

seq1  TTGTTAGACTGACCTATTGACTGAGACAGGGTCTTGCTATGTGGCTGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGACTGACCTATTGACTGAGACAGGGTCTTGCTATGTGGCTGCCT  150

seq1  TGTAAGTCAGGCTGATCCTAAACTTTCCTAAGATCCTCCGCCCTCACCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCAGGCTGATCCTAAACTTTCCTAAGATCCTCCGCCCTCACCCT  200

seq1  CTGGAATGCTGGATTGTAAGTATGCCTTACCATGCCTATTTGACACCTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCTGGATTGTAAGTATGCCTTACCATGCCTATTTGACACCTAG  250

seq1  GTTTCTTCCTGTCAAATCTCACTAATGTCTTGTGAGCTGCTGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCCTGTCAAATCTCACTAATGTCTTGTGAGCTGCTGTG  294