BAC Information

Click to search

BAC

Clone NameB6Ng01-303M05
Chromosome19 (Build37)
Map Location 38,942,667 - 39,055,536
singlet/doubletdoublet
Overlap geneTbc1d12, Hells, LOC209753
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneCyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303M05.bB6Ng01-303M05.g
ACCGA097484GA097485
length1981,125
definitionB6Ng01-303M05.b B6Ng01-303M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,942,667 - 38,942,870)(39,054,407 - 39,055,536)
sequence
ttcaaacgtggctatttgttaataggactacttcttacttcatttggttt
agagtatgaaaattattactaaaacttcgttaacctaaaaaggctcagaa
cttcttctgtcataaagttgtgtgtgtatgtatgtatgtgtgtgttcata
tatatatatatatatatatatatatatatatatatatatatatatata
gaattctttttaattttggcataggagagggagaacaatcattgggattc
ttaatttcaaatttgggaaaagggagtttgcagtgaaagtctgattctcg
gtctcccttcccagttcattgtgaagaggcaatattaagtcaatattaag
gtcatttggaatccgagctgaaaatcacatttactgtggcaattacatct
cagatgggcagagccaagagtggagagtgggtaaaaagttaccatcaata
ttctaattgtttcaaaatccagctagaattttgtttcattcagataaatg
tgaggttggcagatcaagatgcccttcaacagactctcctagaaaggaca
aagtcagtttccatggggtaggaagcagatggcctagggaaagcagagac
cgggcctttgttggagtttgtaggcaaatggattaatgagacaggaaagg
cagacaggaaagtttaggattgcaaaagatgcagaaacctctgggccacg
gttttgaggggttcttaacagtcccacaccctggccctaaaaggatttag
agcaagaataagaacctgatgtctgggaatgtactataggaagtggttga
gggccatagataggatggattgtatgccagaagcatgctttggggaaagt
atttgctattgttagctatattcactagccttgggtggggcagcccaaga
tgtcagagccccataaaatacagaaaataaaacacacaattaatacaata
atatagatagaggataacataagaagaactgaaatagagccaacttacaa
aaagggaagttgaggctaagcattaataatattttaaaaaataaaaaata
aaataaataaaatttaaagattaaaataaataataataaaaataatcata
tttaagatttagtccaacaaatcaatttaaaacttctctttttgtgatgt
agacatctctaaagtatgcaaacaacaaattacactatggtacatgaaat
aactcagctgacatctttaaatagtcaaaacctgaacagcaaatcacagc
acctcaagggcgtaacatgctaaggaactagaaagtatgtatgatacaat
tgcctgtgaaccatgcagaacacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38942667_38942870
seq2: B6Ng01-303M05.b_44_247

seq1  GAATTCTTCAAACGTGGCTATTTGTTAATAGGACTACTTCTTACTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAACGTGGCTATTTGTTAATAGGACTACTTCTTACTTCATT  50

seq1  TGGTTTAGAGTATGAAAATTATTACTAAAACTTCGTTAACCTAAAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGAGTATGAAAATTATTACTAAAACTTCGTTAACCTAAAAAGGC  100

seq1  TCAGAACTTCTTCTGTCATAAAGTTGTGTGTGTATGTATGTATGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTTCTTCTGTCATAAAGTTGTGTGTGTATGTATGTATGTGTGTG  150

seq1  TTCATATATATATATATATATATATATATATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATATATATATATATATATATATATATATATATATATATATATA  200

seq1  TATA  204
      ||||
seq2  TATA  204

seq1: chr19_39054407_39055536
seq2: B6Ng01-303M05.g_67_1191 (reverse)

seq1  CCGTG-TCTGCAGGGTTCACA-GCAATGGTATTCATACATACTTTCTAGT  48
      ||||| |||||| |||||||| ||||| ||| ||||||||||||||||||
seq2  CCGTGTTCTGCATGGTTCACAGGCAATTGTA-TCATACATACTTTCTAGT  49

seq1  CCCTAGGCATTGTTAACGCCCCTGA-GTGCTTGTGATTTGCTGTTCAGGT  97
       |||  ||| |||| |||||| ||| |||| |||||||||||||||||| 
seq2  TCCTTAGCA-TGTT-ACGCCCTTGAGGTGC-TGTGATTTGCTGTTCAGG-  95

seq1  TTTTGACTATTTAAAGATGTCAGCTGGAGTTATTTCATGTTACCCATAGT  147
      ||||||||||||||||||||||||| ||||||||||||||   |||||||
seq2  TTTTGACTATTTAAAGATGTCAGCT-GAGTTATTTCATGT--ACCATAGT  142

seq1  GTAATTTGTTGTTTGCATACTTTAAGAGATGTCTACATCAC-AAAAGAGA  196
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GTAATTTGTTGTTTGCATACTTT-AGAGATGTCTACATCACAAAAAGAGA  191

seq1  AGTTTTAAATTGATTTGTTGGACTAAATCTTAAATATGATTATTTTTATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAATTGATTTGTTGGACTAAATCTTAAATATGATTATTTTTATT  241

seq1  ATTATTTATTTTAATCTTTAAATTTTATTTATTTTATTTTTTATTTTTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTTTAATCTTTAAATTTTATTTATTTTATTTTTTATTTTTTA  291

seq1  AAATATTATTAATGCTTAGCCTCAACTTCCCTTTTTGTAAGTTGGCTCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTAATGCTTAGCCTCAACTTCCCTTTTTGTAAGTTGGCTCTA  341

seq1  TTTCAGTTCTTCTTATGTTATCCTCTATCTATATTATTGTATTAATTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTTCTTATGTTATCCTCTATCTATATTATTGTATTAATTGTG  391

seq1  TGTTTTATTTTCTGTATTTTATGGGGCTCTGACATCTTGGGCTGCCCCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTTCTGTATTTTATGGGGCTCTGACATCTTGGGCTGCCCCAC  441

seq1  CCAAGGCTAGTGAATATAGCTAACAATAGCAAATACTTTCCCCAAAGCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTAGTGAATATAGCTAACAATAGCAAATACTTTCCCCAAAGCAT  491

seq1  GCTTCTGGCATACAATCCATCCTATCTATGGCCCTCAACCACTTCCTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGCATACAATCCATCCTATCTATGGCCCTCAACCACTTCCTATA  541

seq1  GTACATTCCCAGACATCAGGTTCTTATTCTTGCTCTAAATCCTTTTAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTCCCAGACATCAGGTTCTTATTCTTGCTCTAAATCCTTTTAGGG  591

seq1  CCAGGGTGTGGGACTGTTAAGAACCCCTCAAAACCGTGGCCCAGAGGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGTGGGACTGTTAAGAACCCCTCAAAACCGTGGCCCAGAGGTTT  641

seq1  CTGCATCTTTTGCAATCCTAAACTTTCCTGTCTGCCTTTCCTGTCTCATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTTTGCAATCCTAAACTTTCCTGTCTGCCTTTCCTGTCTCATT  691

seq1  AATCCATTTGCCTACAAACTCCAACAAAGGCCCGGTCTCTGCTTTCCCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTGCCTACAAACTCCAACAAAGGCCCGGTCTCTGCTTTCCCTA  741

seq1  GGCCATCTGCTTCCTACCCCATGGAAACTGACTTTGTCCTTTCTAGGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTGCTTCCTACCCCATGGAAACTGACTTTGTCCTTTCTAGGAGA  791

seq1  GTCTGTTGAAGGGCATCTTGATCTGCCAACCTCACATTTATCTGAATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGAAGGGCATCTTGATCTGCCAACCTCACATTTATCTGAATGAA  841

seq1  ACAAAATTCTAGCTGGATTTTGAAACAATTAGAATATTGATGGTAACTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCTAGCTGGATTTTGAAACAATTAGAATATTGATGGTAACTTT  891

seq1  TTACCCACTCTCCACTCTTGGCTCTGCCCATCTGAGATGTAATTGCCACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTCTCCACTCTTGGCTCTGCCCATCTGAGATGTAATTGCCACA  941

seq1  GTAAATGTGATTTTCAGCTCGGATTCCAAATGACCTTAATATTGACTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGATTTTCAGCTCGGATTCCAAATGACCTTAATATTGACTTAA  991

seq1  TATTGCCTCTTCACAATGAACTGGGAAGGGAGACCGAGAATCAGACTTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTCTTCACAATGAACTGGGAAGGGAGACCGAGAATCAGACTTTC  1041

seq1  ACTGCAAACTCCCTTTTCCCAAATTTGAAATTAAGAATCCCAATGATTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACTCCCTTTTCCCAAATTTGAAATTAAGAATCCCAATGATTGT  1091

seq1  TCTCCCTCTCCTATGCCAAAATTAAAAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCCTATGCCAAAATTAAAAAGAATTC  1125