BAC Information

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BAC

Clone NameB6Ng01-304G07
Chromosome19 (Build37)
Map Location 7,537,605 - 7,538,706
singlet/doubletsinglet
Overlap geneRtn3
Upstream geneSlc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, LOC100039547
Downstream gene5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304G07.bB6Ng01-304G07.g
ACCGA097962GA097963
length1,2041,114
definitionB6Ng01-304G07.b B6Ng01-304G07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgggtaagatcaaaaattcaggtgatagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttgggg
ggattgcaagcttgtacaaccactctggaaatcaatctggcggttcctca
gaaaattggacatggtactaccggaggatcctgcaattcctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgcttcactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagct
gtccctcaacagaggaatggttacagaaattgtggtacatttacacaatg
gagcactacacagctattaaaaacaatgaatttattaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgagttaacccaatcacaaa
agaactcacatgatatgtactcaatgataagtggatattagcccagaaac
ttagaatacctgagatacaagatacaagttgcaaatacaagttgcaaaac
acatgaaactcaagaagaacaaagaccaaagtgtggacactttgccccgt
gttagaattgggaacaaaacacccatggaaggagttacagagacaaagtt
tggagctgagacaaaaggatggaccatctagagactgccacacccgggga
tccatcccataatcagcctccaaacgctgacaccattgcatacactagca
agattttgctgaaagaatcctgatatagctgtctcttgtgaggctatgcc
ggggcctggcaaacacagaagtggatgctcacagtcagctaatggatgga
acacagggcccccatggaggagctagaagaaaataacccaaaggagctaa
gggatctgcaaccctatagtggaacacatatgactaccagtaccttggga
gctcattgtctctagctgcatatatatagcagaagaatggccctagttgc
aatcacttggtaaagagaagactctgttcttgccaacctatatgcccagt
ccatggtatgcatggaccatagaatgggaatggtgtggataagtacgact
gctc
gaattctattgttttaattaaagggacactctaaacatgggacactttca
acatggaagactacacacattagcaaaggggtgccagcctgtagatgcca
ttaagccattcttcacataaacagtatgtatatcaatacaaggggagtgt
ggaatattcaggtgtaggtttcccaacacttgaattttcttatgttcaca
gaacaagaaggcaagacacattaccgtgcacaacagtaccagcaactttc
agccatagcatccaaataggaagttagccagcagacaactttgcagccaa
gcaagtcctaaacaaaaagtttcttttgtacaaagaaaaatgttttggct
taaaaaaaatttttttaagaaaaaggctgtaactggcaaaatgtttttct
caatgctttgccccaaagttcagtgttgcaacttcctattccagacactc
cctgccagtcagactgagcatgaatgcccctgatgctgctccacttctaa
tcctcaatggtggatggagcctgtctttccatctacttaaaaacaacaac
aaaaaaagttttctaaagaaaataaaagtattttccagactccactctct
ttaaagctgaaaccaaatttcaatttgatttttgtgtttaatggaaggct
tcttctcccaataatagtacattatataactaataaaataggaatattgt
caaagttctacctctttgcgcttatggatttagtatcaacttcaacatta
catcctaaatcctaaatggagctacttatttgatcatctgtatcacaggt
gcagtagttatatatgaagggactctggagtctttggtctgtgtgactct
gagccaggcacctcaccattctaaagccaagttgttccactgagctagtg
cctttccttcaccactggctgtgagtttaatgatctttcatcttcaagta
ctagcatgctaaagagtccctaaaaattatctaacattacagtatgtctt
gccattatcttttattgagtcttattattgggaagacaccaatcacagtc
atttcatttcggaaaccacttttaaggagtggcctgaagtttggccttct
acttgatgcaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7537605_7538706
seq2: B6Ng01-304G07.g_65_1178

seq1  GAATTCTATTGTTTTAATTAAAGGGACACTCTAAACATGGGACACTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTTTTAATTAAAGGGACACTCTAAACATGGGACACTTTCA  50

seq1  ACATGGAAGACTACACACATTAGCAAAGGGGTGCCAGCCTGTAGATGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGACTACACACATTAGCAAAGGGGTGCCAGCCTGTAGATGCCA  100

seq1  TTAAGCCATTCTTCACATAAACAGTATGTATATCAATACAAGGGGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATTCTTCACATAAACAGTATGTATATCAATACAAGGGGAGTGT  150

seq1  GGAATATTCAGGTGTAGGTTTCCCAACACTTGAATTTTCTTATGTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTCAGGTGTAGGTTTCCCAACACTTGAATTTTCTTATGTTCACA  200

seq1  GAACAAGAAGGCAAGACACATTACCGTGCACAACAGTACCAGCAACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAGGCAAGACACATTACCGTGCACAACAGTACCAGCAACTTTC  250

seq1  AGCCATAGCATCCAAATAGGAAGTTAGCCAGCAGACAACTTTGCAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGCATCCAAATAGGAAGTTAGCCAGCAGACAACTTTGCAGCCAA  300

seq1  GCAAGTCCTAAACAAAAAGTTTCTTTTGTACAAAGAAAAATGTTTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCTAAACAAAAAGTTTCTTTTGTACAAAGAAAAATGTTTTGGCT  350

seq1  TAAAAAAAATTTTTTTAAGAAAAAGGCTGTAACTGGCAAAATGTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATTTTTTTAAGAAAAAGGCTGTAACTGGCAAAATGTTTTTCT  400

seq1  CAATGCTTTGCCCCAAAGTTCAGTGTTGCAACTTCCTATTCCAGACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTTGCCCCAAAGTTCAGTGTTGCAACTTCCTATTCCAGACACTC  450

seq1  ATTGCCAGTCAGACTGAGCATGAATGCCCCTGATGCTGCTCCACTTCTAA  500
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTCAGACTGAGCATGAATGCCCCTGATGCTGCTCCACTTCTAA  500

seq1  TCCTCAATGGTGGATGGAGCCTGTCTTTCCATCTACTTAAAAACAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAATGGTGGATGGAGCCTGTCTTTCCATCTACTTAAAAACAACAAC  550

seq1  AAAAAAAGTTTTCTAAAGAAAATAAAAGTATTTTCCAGACTCCACTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTTTCTAAAGAAAATAAAAGTATTTTCCAGACTCCACTCTCT  600

seq1  TTAAAGCTGAAACCAAATTTCAATTTGATTTTTGTGTTTAATGGAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTGAAACCAAATTTCAATTTGATTTTTGTGTTTAATGGAAGGCT  650

seq1  TCTTCTCCCAATAATAGTACATTATATAACTAATAAAATAGGAATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCAATAATAGTACATTATATAACTAATAAAATAGGAATATTGT  700

seq1  CAAAGTTCTACCTCTTTGCGCTTATGGATTTAGTATCAACTTCAACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCTACCTCTTTGCGCTTATGGATTTAGTATCAACTTCAACATTA  750

seq1  CATCCTAAATCCTAAATGGAGCTACTTATTTGATCATCTGTATCACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAATCCTAAATGGAGCTACTTATTTGATCATCTGTATCACAGGT  800

seq1  GCAGTAGTTATATATGAAGGGACTCTGGAGTCTTTGGTCTGTGTGACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTTATATATGAAGGGACTCTGGAGTCTTTGGTCTGTGTGACTCT  850

seq1  GAGCCAGGCACCTCACCATTCTAAAGCCAAGTTGTTCCACTGAGCTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGCACCTCACCATTCTAAAGCCAAGTTGTTCCACTGAGCTAGTG  900

seq1  CCTTTCCTTCACCACTGGCTGTGAG-TTAATGATC-TTCATCTTCAAGTA  948
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  CCTTTCCTTCACCACTGGCTGTGAGTTTAATGATCTTTCATCTTCAAGTA  950

seq1  CTAGCATGCTAAAGAGTCCCTAAAAATTATCT-ACA-TACAGTATGTCTT  996
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  CTAGCATGCTAAAGAGTCCCTAAAAATTATCTAACATTACAGTATGTCTT  1000

seq1  GCCAATATCTTT--ATGAGTCTTA-TATT-GGAAGACACCATCAACAGTC  1042
      |||| |||||||   ||||||||| |||| |||||||||||   ||||||
seq2  GCCATTATCTTTTATTGAGTCTTATTATTGGGAAGACACCAATCACAGTC  1050

seq1  A-TTCAATTCGGAAA-CACTTTTAGGAAGT-GCCTGAAGTTTAGC--TCT  1087
      | |||| |||||||| |||||||| | ||| ||||||||||| ||  |||
seq2  ATTTCATTTCGGAAACCACTTTTAAGGAGTGGCCTGAAGTTTGGCCTTCT  1100

seq1  ACTTGATGGAAAATG  1102
      ||||||| | |||||
seq2  ACTTGAT-GCAAATG  1114