BAC Information

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BAC

Clone NameB6Ng01-304I20
Chromosome19 (Build37)
Map Location 27,235,285 - 27,340,539
singlet/doubletdoublet
Overlap geneVldlr, LOC100042588
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
Downstream geneKcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I20.bB6Ng01-304I20.g
ACCGA098080GA098081
length5641,037
definitionB6Ng01-304I20.b B6Ng01-304I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,339,970 - 27,340,539)(27,235,285 - 27,236,326)
sequence
caagtggagtcaggggagtcaggggctgctcttccctctgcttgtgctgg
ctgggcacatgcagtggcagtagcagcaggaacataaggtaggtgacaga
gatcctccctgggagcagaggcagggggatgaagatgaccttttaagaag
aagaagggtggggaaagagaggctggtgacaaaaaaaggtctcatccaaa
cagggagcttctcaaccagatattgccacgtggtgatatgtgacacttgg
tctgggtgaccccagacctcatatacttaatctttaccctgtaaatgatg
ggaatatagaaagttccctcctcaggccatcctactttataggtgggcca
ttcattcctgcagaagacagttagtttgcggagaggaacaaccagaccaa
agtcttccgggactctgcaaatgtccttaaaatgtctcaggaccgggtgc
tttgtgcctattccatcccaggaatcaaagaaaagtttgtaggagaggac
aaaaaagcagaaacagaactcacacagacagatacattcccaggggaggg
gtgtggggtgggga
gaattcatgcctgtaatacccagtgcaggatcgcagtgactgtccttctc
tttattaggtttctttgtcttgcaaaatttcccacaatagatcctgaatc
atggtcctttataaaccagtcaagataaaaagatgggaaccccacaaata
agtacttttatatcttctcttcctctcagtaatacaggctcatcctttat
cttccagacaaacggatgggcttgtcaacacagactatttccacctgatc
ttaaccttccaaagaagttagagagagggcttcatggacaggcctgaaaa
ataataaaactcaatccagggggagctgatgagggggatctgcagctagt
ggcaagactaaggggagaggcaggatgtgaagatctgagggaggaggctc
tgccagaattctcacacacgacagcaaggcaccagccgatcatctgtctg
taggaactgggaaggttctgactctgacaaatttggtataagaactgtct
aggggagtgtttaaaaaaaaaaaaaccccgtcagacttttccattctggc
tgagcatatgaggagcttagaggttgccacacaccaatctaacggcaggt
aggtccaaagctgaacacactgaaaatcaagacctattcttgaatctgga
agagaaatgaggtcccacatggggcaaactactttccctggaaaaacaac
aacaacaacaacaaaaacaacaaaaacaacaacaacaacaacaacaaaaa
cagtagacactgataaccacagctttccagagcagaaactcaaacccttg
ggaagaagcagaggtgtaggatcaactggaggctctgtctgcaatagtca
gctctgacagtgagctccacacccatcgctttaaacctcaccgccgtgcc
actccccaccccagactctgtcatcaggagccccatacatttgcaaatta
cctcctaggtctctcataatgatactgggggaaaactgtctctgcttctt
gggggtgagaaaaaaaaactattttaaaacacaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27339970_27340539
seq2: B6Ng01-304I20.b_49_618 (reverse)

seq1  TCCCCACCCCACACCCCTCCCCTGGGAATGTATCTGTCTGTGTGAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCACACCCCTCCCCTGGGAATGTATCTGTCTGTGTGAGTTCT  50

seq1  GTTTCTGCTTTTTTGTCCTCTCCTACAAACTTTTCTTTGATTCCTGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCTTTTTTGTCCTCTCCTACAAACTTTTCTTTGATTCCTGGGAT  100

seq1  GGAATAGGCACAAAGCACCCGGTCCTGAGACATTTTAAGGACATTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGCACAAAGCACCCGGTCCTGAGACATTTTAAGGACATTTGCAG  150

seq1  AGTCCCGGAAGACTTTGGTCTGGTTGTTCCTCTCCGCAAACTAACTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGGAAGACTTTGGTCTGGTTGTTCCTCTCCGCAAACTAACTGTCT  200

seq1  TCTGCAGGAATGAATGGCCCACCTATAAAGTAGGATGGCCTGAGGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGAATGAATGGCCCACCTATAAAGTAGGATGGCCTGAGGAGGGA  250

seq1  ACTTTCTATATTCCCATCATTTACAGGGTAAAGATTAAGTATATGAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATATTCCCATCATTTACAGGGTAAAGATTAAGTATATGAGGTC  300

seq1  TGGGGTCACCCAGACCAAGTGTCACATATCACCACGTGGCAATATCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCACCCAGACCAAGTGTCACATATCACCACGTGGCAATATCTGGT  350

seq1  TGAGAAGCTCCCTGTTTGGATGAGACCTTTTTTTGTCACCAGCCTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTCCCTGTTTGGATGAGACCTTTTTTTGTCACCAGCCTCTCTT  400

seq1  TCCCCACCCTTCTTCTTCTTAAAAGGTCATCTTCATCCCCCTGCCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCTTCTTCTTCTTAAAAGGTCATCTTCATCCCCCTGCCTCTGC  450

seq1  TCCCAGGGAGGATCTCTGTCACCTACCTTATGTTCCTGCTGCTACTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGAGGATCTCTGTCACCTACCTTATGTTCCTGCTGCTACTGCCA  500

seq1  CTGCATGTGCCCAGCCAGCACAAGCAGAGGGAAGAGCAGCCCCTGACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCCCAGCCAGCACAAGCAGAGGGAAGAGCAGCCCCTGACTCC  550

seq1  CCTGACTCCACTTGGAATTC  570
      ||||||||||||||||||||
seq2  CCTGACTCCACTTGGAATTC  570

seq1: chr19_27235285_27236326
seq2: B6Ng01-304I20.g_67_1103

seq1  GAATTCATGCCTGTAATACCCAGTGCAGGATCGCAGTGACTGTCCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTGTAATACCCAGTGCAGGATCGCAGTGACTGTCCTTCTC  50

seq1  TTTATTAGGTTTCTTTGTCTTGCAAAATTTCCCACAATAGATCCTGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGTTTCTTTGTCTTGCAAAATTTCCCACAATAGATCCTGAATC  100

seq1  ATGGTCCTTTATAAACCAGTCAAGATAAAAAGATGGGAACCCCACAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTTTATAAACCAGTCAAGATAAAAAGATGGGAACCCCACAAATA  150

seq1  AGTACTTTTATATCTTCTCTTCCTCTCAGTAATACAGGCTCATCCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTATATCTTCTCTTCCTCTCAGTAATACAGGCTCATCCTTTAT  200

seq1  CTTCCAGACAAACGGATGGGCTTGTCAACACAGACTATTTCCACCTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACAAACGGATGGGCTTGTCAACACAGACTATTTCCACCTGATC  250

seq1  TTAACCTTCCAAAGAAGTTAGAGAGAGGGCTTCATGGACAGGCCTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCCAAAGAAGTTAGAGAGAGGGCTTCATGGACAGGCCTGAAAA  300

seq1  ATAATAAAACTCAATCCAGGGGGAGCTGATGAGGGGGATCTGCAGCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAACTCAATCCAGGGGGAGCTGATGAGGGGGATCTGCAGCTAGT  350

seq1  GGCAAGACTAAGGGGAGAGGCAGGATGTGAAGATCTGAGGGAGGAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACTAAGGGGAGAGGCAGGATGTGAAGATCTGAGGGAGGAGGCTC  400

seq1  TGCCAGAATTCTCACACACGACAGCAAGGCACCAGCCGATCATCTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATTCTCACACACGACAGCAAGGCACCAGCCGATCATCTGTCTG  450

seq1  TAGGAACTGGGAAGGTTCTGACTCTGACAAATTTGGTATAAGAACTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGGGAAGGTTCTGACTCTGACAAATTTGGTATAAGAACTGTCT  500

seq1  AGGGGAGTGTTTAAAAAAAAAAAAACCCCGTCAGACTTTTCCATTCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTGTTTAAAAAAAAAAAAACCCCGTCAGACTTTTCCATTCTGGC  550

seq1  TGAGCATATGAGGAGCTTAGAGGTTGCCACACACCAATCTAACGGCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATATGAGGAGCTTAGAGGTTGCCACACACCAATCTAACGGCAGGT  600

seq1  AGGTCCAAAGCTGAACACACTGAAAATCAAGACCTATTCTTGAATCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAAGCTGAACACACTGAAAATCAAGACCTATTCTTGAATCTGGA  650

seq1  AGAGAAATGAGGTCCCACATGGGGCAAACTACTTTCCCTGGAAAAACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGAGGTCCCACATGGGGCAAACTACTTTCCCTGGAAAAACAAC  700

seq1  AACAACAACAACAAAAACAACAAAAACAACAACAACAACAACAACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAAACAACAAAAACAACAACAACAACAACAACAAAAA  750

seq1  CAGTAGACACTGATAACCACAGCTTTCCAGAGCAGAAACTCAAACCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGACACTGATAACCACAGCTTTCCAGAGCAGAAACTCAAACCCTTG  800

seq1  GGAAGAAGCAGAGGTGTAGGATCAACTGGAGGCTCTGTCTGCAATAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGCAGAGGTGTAGGATCAACTGGAGGCTCTGTCTGCAATAGTCA  850

seq1  GCTCTGACAGTGAGCTCCACACCCATCGCTTTAAACCTCACCGCCGTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACAGTGAGCTCCACACCCATCGCTTTAAACCTCACCGCCGTGCC  900

seq1  ACTCCCCACCCCAGACCCTGTCATCAGGAGCCCCATACATTTGCAAAATT  950
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  ACTCCCCACCCCAGACTCTGTCATCAGGAGCCCCATACATTTGC-AAATT  949

seq1  ACCTCCTAGGTCTCTCATAATGAATACTGGGGGAAAACTGTCTCCTGCTT  1000
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  ACCTCCTAGGTCTCTCATAATG-ATACTGGGGGAAAACTGTCT-CTGCTT  997

seq1  CCTTTGGGGTGAGAAAAAAAAAACTATTTTAAAACACACCAG  1042
       ||| |||||||| ||||||||||||||||||||||||||||
seq2  -CTTGGGGGTGAG-AAAAAAAAACTATTTTAAAACACACCAG  1037