BAC Information

Click to search

BAC

Clone NameB6Ng01-306C13
Chromosome19 (Build37)
Map Location 35,955,832 - 35,956,940
singlet/doubletsinglet
Overlap geneA830019P07Rik
Upstream geneMphosph1, LOC383464, LOC100042292
Downstream geneHtr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306C13.bB6Ng01-306C13.g
ACCGA099268GA099269
length1,112219
definitionB6Ng01-306C13.b B6Ng01-306C13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcaatgccagagccaccagtgcttcaaacctttcacttaatt
ttcagacaagagtggaaataattgggctgcacttggcctatttttatgaa
attattctgcggaacagtctttacttcagaacagctccaccttatccacc
tccgtgggtttgctaaaaggagggtagcagtttgtggaaagagagttgta
agcctttaaaccatcatatttaaaacagtcagcccaaatcatacatactt
cagtgggcacagatggaaagcccaaaactaaaagaaaaaatattcagtag
cattgataatttagtaatagtacttctcttcaataatcaggactatactt
taaagtccttgcaaactcacattggactgcacaagcaattgcatgattag
taaatgccagaatttccatgaggaatccctaaaacgcatttctggttggg
cagtcgacatgaacagcatggattttcctaacagagatgagctgcatttc
ctgcagctctcacatgttcaagtgatcaaggccaaagcccctggctttaa
tcctgacactcctggaacagtacatgttatttaaataaagttaattatct
ctgaaatgcacagaatgagttctcaggaccccagaaggttcaaacagatg
gggaaagcactccagccacctgtccatctcaaaacacacacaggcacaca
cgcatgtgtgcgcgcacgcgcgcgcacacacacacacacacatgcacaca
agcacacacgctcagtacatgtgcaatttccttcacatttttctcttcca
gttgcaaacacataggaacagcagtgactgctgggattaatttgattgtc
agactgcaggatactactgaggtcatttctactactgcgcagggtcagaa
aaccgtggcaagcgattgaaaatggctccctcttccttctcttagccatg
ctgctcagtgtgaattgcacaagttcgtttctgtgcaactctgctctctc
cacaattctgttcgaatgccaagcatgagtgcatatctccagttgcttcc
aggtcaatcctagaacttagaagctatttccaattccttttaccctcacc
cccctctctgtc

tctgttcagctctatacctcattttttgattgggttgtttggttttttgg
aggttagcttcttgagttctttatatattttggatattagccctctatca
tatgtgggagtaaatgggagttcttcccatttggaagggagaagaaagca
atcatggggaagcagagggaagcaggaaccttagtgggagaggagaggag
aaggggaaaggggaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35955832_35956940
seq2: B6Ng01-306C13.b_49_1160

seq1  GAATTCCATCAATGCCAGAGCCACCAGTGCTTCAAACCTTTCACTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAATGCCAGAGCCACCAGTGCTTCAAACCTTTCACTTAATT  50

seq1  TTCAGACAAGAGTGGAAATAATTGGGCTGCACTTGGCCTATTTTTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAAGAGTGGAAATAATTGGGCTGCACTTGGCCTATTTTTATGAA  100

seq1  ATTATTCTGCGGAACAGTCTTTACTTCAGAACAGCTCCACCTTATCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGCGGAACAGTCTTTACTTCAGAACAGCTCCACCTTATCCACC  150

seq1  TCCGTGGGTTTGCTAAAAGGAGGGTAGCAGTTTGTGGAAAGAGAGTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGGTTTGCTAAAAGGAGGGTAGCAGTTTGTGGAAAGAGAGTTGTA  200

seq1  AGCCTTTAAACCATCATATTTAAAACAGTCAGCCCAAATCATACATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAAACCATCATATTTAAAACAGTCAGCCCAAATCATACATACTT  250

seq1  CAGTGGGCACAGATGGAAAGCCCAAAACTAAAAGAAAAAATATTCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCACAGATGGAAAGCCCAAAACTAAAAGAAAAAATATTCAGTAG  300

seq1  CATTGATAATTTAGTAATAGTACTTCTCTTCAATAATCAGGACTATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATAATTTAGTAATAGTACTTCTCTTCAATAATCAGGACTATACTT  350

seq1  TAAAGTCCTTGCAAACTCACATTGGACTGCACAAGCAATTGCATGATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCTTGCAAACTCACATTGGACTGCACAAGCAATTGCATGATTAG  400

seq1  TAAATGCCAGAATTTCCATGAGGAATCCCTAAAACGCATTTCTGGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCAGAATTTCCATGAGGAATCCCTAAAACGCATTTCTGGTTGGG  450

seq1  CAGTCGACATGAACAGCATGGATTTTCCTAACAGAGATGAGCTGCATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGACATGAACAGCATGGATTTTCCTAACAGAGATGAGCTGCATTTC  500

seq1  CTGCAGCTCTCACATGTTCAAGTGATCAAGGCCAAAGCCCCTGGCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTCTCACATGTTCAAGTGATCAAGGCCAAAGCCCCTGGCTTTAA  550

seq1  TCCTGACACTCCTGGAACAGTACATGTTATTTAAATAAAGTTAATTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACACTCCTGGAACAGTACATGTTATTTAAATAAAGTTAATTATCT  600

seq1  CTGAAATGCACAGAATGAGTTCTCAGGACCCCAGAAGGTTCAAACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCACAGAATGAGTTCTCAGGACCCCAGAAGGTTCAAACAGATG  650

seq1  GGGAAAGCACTCCAGCCACCTGTCCATCTCAAAACACACACAGGCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCACTCCAGCCACCTGTCCATCTCAAAACACACACAGGCACACA  700

seq1  CGCATGTGTGCGCGCACGCGCGCGCACACACACACACACACATGCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTGTGCGCGCACGCGCGCGCACACACACACACACACATGCACACA  750

seq1  AGCACACACGCTCAGTACATGTGCAATTTCCTTCACATTTTTCTCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACGCTCAGTACATGTGCAATTTCCTTCACATTTTTCTCTTCCA  800

seq1  GTTGCAAACACATAGGAACAGCAGTGACTGCTGGGATTAATTTGATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAACACATAGGAACAGCAGTGACTGCTGGGATTAATTTGATTGTC  850

seq1  AGACTGCAGGATACTACTGAGGTCATTTCTACTACTGCGCAGGGTCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAGGATACTACTGAGGTCATTTCTACTACTGCGCAGGGTCAGAA  900

seq1  AACCGTGGCAAGCGATTGAAAATGGCTCCCTCTTCCTTCTCTTAGCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGGCAAGCGATTGAAAATGGCTCCCTCTTCCTTCTCTTAGCCATG  950

seq1  CTGCTCAAGTGGTGAATTGGCACAAGGTTCGGTTTCTGTGCAACTCTGCT  1000
      |||||| ||| ||||||| |||||| |||| |||||||||||||||||||
seq2  CTGCTC-AGT-GTGAATT-GCACAA-GTTC-GTTTCTGTGCAACTCTGCT  995

seq1  CTCTCCAC-ATTCTG-TCGAATGCCAAGCATGAGTGCATATCTCCAGTTG  1048
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCCACAATTCTGTTCGAATGCCAAGCATGAGTGCATATCTCCAGTTG  1045

seq1  CTTCCAGGGTCATCTTAGA--CTAGAAGCTATT--CCATTCCTTTTTACC  1094
      ||||||||   ||| ||||   |||||||||||  | |||||||||  ||
seq2  CTTCCAGGTCAATCCTAGAACTTAGAAGCTATTTCCAATTCCTTTTACCC  1095

seq1  TCA--CCCCTCTCTGTC  1109
      |||  ||||||||||||
seq2  TCACCCCCCTCTCTGTC  1112


| Home | SequenceCutter | Blast | Download |