BAC Information

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BAC

Clone NameB6Ng01-306E23
Chromosome19 (Build37)
Map Location 56,047,335 - 56,176,413
singlet/doubletdoublet
Overlap geneLOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306E23.bB6Ng01-306E23.g
ACCGA099381GA099382
length1,1341,202
definitionB6Ng01-306E23.b B6Ng01-306E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,047,335 - 56,048,472)(56,175,246 - 56,176,413)
sequence
gaattctttctataaaaataagcaagactacccatctaattagtatgcaa
attagcattcatttttaataaatgataagactatatgtataccagagaat
gatctgaacatttctttatggtttttaatcacagtgtttgatttgtatag
ttattatatatacccagagtcatgtaaaattttctcatgcaaaaagcatt
tgcaagtgaggagggaataaaaggtcatgttttggagtgtctggaacctc
accccgttggctgaaaacccacctaaagaaaatgaccgtggagtatcagc
cgtgtccttctactgagtgaggaacagtcatagggtggggcagaagatat
acctaaccgcacaaatagaactccgaagcttcttggtgattcaaacctgg
aattccagctactcaggaagctgaggcaggaggattgcaagcaacttcag
gccctgcctgtgctacagggtgagctcaagaccacctgggagaccttctc
tccaaacaaaaagaggctgggatacagctaggtgttagaattccaagtac
aaggccttgggtccaatacccagtaccaagggtgttgggagaagtactgg
ccgtgcaccatgacaggctcagcgaagagaaaggtgcagcctgaggcaca
ccatccagagaggctttcaggaaagaataagcttccagatgacctttgaa
caatgatcaggtttcttttgtccagtgtttcacatataaattatttataa
catttataaattataaaaattagaaaaccaatataccttctctatggaaa
atattacaacgtacaaagaagaaaattaagtggtgccagatacaagtggt
attttgcatctatttcttcctagccctttgtctgtgtaacatgcccatct
agtcacacgtggctttcacagaatgagcttatacttagtgactcctcttg
aggctactcgactcacaggaattttcacaaatcattaagtagcgatctat
gaaagatgtgacttataagtcatcgtgtgcacggcagctcttcagcactt
tgaacaaacagcttcacaaaagaaacctgaccgtaagaatttattcttga
ctcacaggtttcggactgctgtcagtgcctttga
gaattcccaagccacatcaggatcacctgtaaactcttaagaccaagttt
taaaagcaacaaacaatgacgttggaggctggagggcagagccagcggga
cacgggcatcgctgttgtcgagtgtagctgaacagcaccagactaaacac
acaaacaccccaggtgcttctccttggtcttgccagagaggcatggcttg
ttcaaggacttacaatgttactcaggatgtttaaatgactcttaaaaaac
caaactgacctctcctacagaattccacagagaatatagaatgttaaaat
tctccagatggttgagattaaggaaaaatatactcgttcctaaaatatgc
aaccagtgccttattgtctgtcttactcagtggaccaactctttcctaaa
tggagtggtagacactgaagtgcccatcttgagttgttgtgaattcacta
agatgaaagggggaaaagacttgacatgccagaaagatgtcattcctgtg
acggccaaactgacaactcagacagactccgtgtatggtttgcagtgtgg
ttaggattctgtgtttctaaaagggactggtgcatgaaggactaactcac
gagcccaggttttcggggagaaaagaccgcaggagcactgtaataataac
agtggccaacctcccagaaccttgtgtgcatctgcatggtagcagtgtca
tcatttctcatacatttttttttttttttttgccacaatgaagttttgag
ttgtgaagcaattaaatgaccacatttctcttctgtgccctgggaatatg
catataaaatagattgtttggaaataaggtgcatttagtttaaatcctta
gaaggacaaaaggaacacctaacttggcaggtttgatctaccctcctgag
aaataagctctgaagagaatggcaaaagaaaaggaactacgtacttcact
catcctgggtaaagtttcaaccatcttatttcagaagagaagttgaggag
aagaagtgtagatgaaagatgagacagtccaacgagaacttcccatttaa
aggaataaagtctcccaggctcagagaccctcacagccagaacttatact
ccagtaactatagctattagccatgcctgtaacaactcagggaactgaag
aattgcttcaatgacttaaaagaacatctgctctgtgctgtaacaaggtt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56047335_56048472
seq2: B6Ng01-306E23.b_44_1177

seq1  GAATTCTTTCTATAAAAATAAGCAAGACTACCCATCTAATTAGTATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTATAAAAATAAGCAAGACTACCCATCTAATTAGTATGCAA  50

seq1  ATTAGCATTCATTTTTAATAAATGATAAGACTATATGTATACCAGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTCATTTTTAATAAATGATAAGACTATATGTATACCAGAGAAT  100

seq1  GATCTGAACATTTCTTTATGGTTTTTAATCACAGTGTTTGATTTGTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAACATTTCTTTATGGTTTTTAATCACAGTGTTTGATTTGTATAG  150

seq1  TTATTATATATACCCAGAGTCATGTAAAATTTTCTCATGCAAAAAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATATACCCAGAGTCATGTAAAATTTTCTCATGCAAAAAGCATT  200

seq1  TGCAAGTGAGGAGGGAATAAAAGGTCATGTTTTGGAGTGTCTGGAACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGAGGAGGGAATAAAAGGTCATGTTTTGGAGTGTCTGGAACCTC  250

seq1  ACCCCGTTGGCTGAAAACCCACCTAAAGAAAATGACCGTGGAGTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTTGGCTGAAAACCCACCTAAAGAAAATGACCGTGGAGTATCAGC  300

seq1  CGTGTCCTTCTACTGAGTGAGGAACAGTCATAGGGTGGGGCAGAAGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTTCTACTGAGTGAGGAACAGTCATAGGGTGGGGCAGAAGATAT  350

seq1  ACCTAACCGCACAAATAGAACTCCGAAGCTTCTTGGTGATTCAAACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCGCACAAATAGAACTCCGAAGCTTCTTGGTGATTCAAACCTGG  400

seq1  AATTCCAGCTACTCAGGAAGCTGAGGCAGGAGGATTGCAAGCAACTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCTACTCAGGAAGCTGAGGCAGGAGGATTGCAAGCAACTTCAG  450

seq1  GCCCTGCCTGTGCTACAGGGTGAGCTCAAGACCACCTGGGAGACCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCTGTGCTACAGGGTGAGCTCAAGACCACCTGGGAGACCTTCTC  500

seq1  TCCAAACAAAAAGAGGCTGGGATACAGCTAGGTGTTAGAATTCCAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAAAAAGAGGCTGGGATACAGCTAGGTGTTAGAATTCCAAGTAC  550

seq1  AAGGCCTTGGGTCCAATACCCAGTACCAAGGGTGTTGGGAGAAGTACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTGGGTCCAATACCCAGTACCAAGGGTGTTGGGAGAAGTACTGG  600

seq1  CCGTGCACCATGACAGGCTCAGCGAAGAGAAAGGTGCAGCCTGAGGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCACCATGACAGGCTCAGCGAAGAGAAAGGTGCAGCCTGAGGCACA  650

seq1  CCATCCAGAGAGGCTTTCAGGAAAGAATAAGCTTCCAGATGACCTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGAGAGGCTTTCAGGAAAGAATAAGCTTCCAGATGACCTTTGAA  700

seq1  CAATGATCAGGTTTCTTTTGTCCAGTGTTTCACATATAAATTATTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCAGGTTTCTTTTGTCCAGTGTTTCACATATAAATTATTTATAA  750

seq1  CATTTATAAATTATAAAAATTAGAAAACCAATATACCTTCTCTATGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAATTATAAAAATTAGAAAACCAATATACCTTCTCTATGGAAA  800

seq1  ATATTACAACGTACAAAGAAGAAAATTAAAGTGGTGCCAGATACAAGTGG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATTACAACGTACAAAGAAGAAAATT-AAGTGGTGCCAGATACAAGTGG  849

seq1  TATTTTGCATCTATTTCTTCCTAGCCCTTTGTCTGTGTAACATGCCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCATCTATTTCTTCCTAGCCCTTTGTCTGTGTAACATGCCCATC  899

seq1  TAGTCACACGTGGCTTTCACAGAAGGAGGCTTATACTTAGTGACTCCTCT  950
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  TAGTCACACGTGGCTTTCACAGAATGA-GCTTATACTTAGTGACTCCTCT  948

seq1  TGAGGGCTACTCGACTCACAAGGAATTTTCACAAATCATTAAGTAGCGAT  1000
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGA-GGCTACTCGACTCAC-AGGAATTTTCACAAATCATTAAGTAGCGAT  996

seq1  CTATGAAAAGATGTGACTTATAAAGTCATCGTGTGCACGGCAGCTCTTCA  1050
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTATG-AAAGATGTGACTTAT-AAGTCATCGTGTGCACGGCAGCTCTTCA  1044

seq1  GCACTT--GACAAACAGC-TCACACAGAAACCCTGACAGTAAG-ATTTA-  1095
      ||||||   ||||||||| ||||| |  || |||||| ||||| ||||| 
seq2  GCACTTTGAACAAACAGCTTCACAAAAGAAACCTGACCGTAAGAATTTAT  1094

seq1  TCTTGACTCACAGTTTCAGAGACTGCTGGGTTCAGTG-CTTTGA  1138
      ||||||||||||| ||  | ||||||||   |||||| ||||||
seq2  TCTTGACTCACAGGTTTCG-GACTGCTG---TCAGTGCCTTTGA  1134

seq1: chr19_56175246_56176413
seq2: B6Ng01-306E23.g_64_1265 (reverse)

seq1  CAAACCTTGTCACA----ACAGCAAGTGCTCTT---AGCTGCTG-AGCCA  42
      |||||||||| |||    | ||||  || ||||   ||    || ||| |
seq2  CAAACCTTGTTACAGCACAGAGCAGATGTTCTTTTAAGTCATTGAAGCAA  50

seq1  TCTTTCCAGTCCCTGAGTTTGTTACCAGGCAT-GCT-ATAGCTA-AGGTA  89
      |  |||   |||||||| |||||| ||||||| ||| ||||||| || ||
seq2  TTCTTCAGTTCCCTGAG-TTGTTA-CAGGCATGGCTAATAGCTATAGTTA  98

seq1  CTGAAG--TAAG-TCT-GCTGTGAGTGTCTCTGAGGCTTGGAGACTTTAT  135
      ||| ||  |||| ||| |||||||| ||||||||| || |||||||||||
seq2  CTGGAGTATAAGTTCTGGCTGTGAGGGTCTCTGAGCCTGGGAGACTTTAT  148

seq1  --CCTTAAATGGGAAGTCCTCGTT-GACTGTCTCATC-TTCATCTACACT  181
        | ||||||||||||| |||||| |||||||||||| ||||||||||||
seq2  TCCTTTAAATGGGAAGTTCTCGTTGGACTGTCTCATCTTTCATCTACACT  198

seq1  --CTCTCCTCCACTTCTC-TCTGAAATAAGATGG-TGGAACTTTA-CCAG  226
         ||||||| ||||||| ||||||||||||||| || ||||||| ||||
seq2  TCTTCTCCTCAACTTCTCTTCTGAAATAAGATGGTTGAAACTTTACCCAG  248

seq1  GATGAGTG-AGTACGTAGTTCCTTT--CTTTGCCA-TCTC-TCAGAGCTT  271
      |||||||| ||||||||||||||||   ||||||| |||| |||||||||
seq2  GATGAGTGAAGTACGTAGTTCCTTTTCTTTTGCCATTCTCTTCAGAGCTT  298

seq1  A-TTCTCAGGAGGGTAGATCAAA-CTGCCAAGTTAGGTGT--CCTTTGTC  317
      | ||||||||||||||||||||| ||||||||||||||||  | ||||||
seq2  ATTTCTCAGGAGGGTAGATCAAACCTGCCAAGTTAGGTGTTCCTTTTGTC  348

seq1  CTTCTAAGGATTTAAACTAAATGCACCTTATTTCCAAACAATCTATTTTA  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGGATTTAAACTAAATGCACCTTATTTCCAAACAATCTATTTTA  398

seq1  TATGCATATTCCCAGGGCACAGAAGAG-AATGTGGTCATTTAATTGCTTC  416
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATGCATATTCCCAGGGCACAGAAGAGAAATGTGGTCATTTAATTGCTTC  448

seq1  ACAACTCAAAACTTCATTGTGGC--AAAAAAAAAAAAAAATGTATGAGAA  464
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ACAACTCAAAACTTCATTGTGGCAAAAAAAAAAAAAAAAATGTATGAGAA  498

seq1  ATGATGACACTGCTACCATGCAGATGCACACAAGGTTCTGGGAGGTTGGC  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACACTGCTACCATGCAGATGCACACAAGGTTCTGGGAGGTTGGC  548

seq1  CACTGTTATTATTACAGTGCTCCTGCGGTCTTTTCTCCCCGAAAACCTGG  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTATTATTACAGTGCTCCTGCGGTCTTTTCTCCCCGAAAACCTGG  598

seq1  GCTCGTGAGTTAGTCCTTCATGCACCAGTCCCTTTTAGAAACACAGAATC  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGAGTTAGTCCTTCATGCACCAGTCCCTTTTAGAAACACAGAATC  648

seq1  CTAACCACACTGCAAACCATACACGGAGTCTGTCTGAGTTGTCAGTTTGG  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACACTGCAAACCATACACGGAGTCTGTCTGAGTTGTCAGTTTGG  698

seq1  CCGTCACAGGAATGACATCTTTCTGGCATGTCAAGTCTTTTCCCCCTTTC  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCACAGGAATGACATCTTTCTGGCATGTCAAGTCTTTTCCCCCTTTC  748

seq1  ATCTTAGTGAATTCACAACAACTCAAGATGGGCACTTCAGTGTCTACCAC  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTGAATTCACAACAACTCAAGATGGGCACTTCAGTGTCTACCAC  798

seq1  TCCATTTAGGAAAGAGTTGGTCCACTGAGTAAGACAGACAATAAGGCACT  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAGGAAAGAGTTGGTCCACTGAGTAAGACAGACAATAAGGCACT  848

seq1  GGTTGCATATTTTAGGAACGAGTATATTTTTCCTTAATCTCAACCATCTG  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATATTTTAGGAACGAGTATATTTTTCCTTAATCTCAACCATCTG  898

seq1  GAGAATTTTAACATTCTATATTCTCTGTGGAATTCTGTAGGAGAGGTCAG  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTAACATTCTATATTCTCTGTGGAATTCTGTAGGAGAGGTCAG  948

seq1  TTTGGTTTTTTAAGAGTCATTTAAACATCCTGAGTAACATTGTAAGTCCT  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTAAGAGTCATTTAAACATCCTGAGTAACATTGTAAGTCCT  998

seq1  TGAACAAGCCATGCCTCTCTGGCAAGACCAAGGAGAAGCACCTGGGGTGT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGCCATGCCTCTCTGGCAAGACCAAGGAGAAGCACCTGGGGTGT  1048

seq1  TTGTGTGTTTAGTCTGGTGCTGTTCAGCTACACTCGACAACAGCGATGCC  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTTAGTCTGGTGCTGTTCAGCTACACTCGACAACAGCGATGCC  1098

seq1  CGTGTCCCGCTGGCTCTGCCCTCCAGCCTCCAACGTCATTGTTTGTTGCT  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCCGCTGGCTCTGCCCTCCAGCCTCCAACGTCATTGTTTGTTGCT  1148

seq1  TTTAAAACTTGGTCTTAAGAGTTTACAGGTGATCCTGATGTGGCTTGGGA  1164
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTTGGTCTTAAGAGTTTACAGGTGATCCTGATGTGGCTTGGGA  1198

seq1  ATTC  1168
      ||||
seq2  ATTC  1202