BAC Information

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BAC

Clone NameB6Ng01-306N20
Chromosome19 (Build37)
Map Location 55,242,943 - 55,376,225
singlet/doubletdoublet
Overlap geneTectb, Gucy2g, Acsl5, Zdhhc6
Upstream geneLOC100043004, Gpam
Downstream geneVti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306N20.bB6Ng01-306N20.g
ACCGA099786GA099787
length1,0851,147
definitionB6Ng01-306N20.b B6Ng01-306N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,375,133 - 55,376,225)(55,242,943 - 55,244,081)
sequence
gaattccaacaggaagtgagcttctccacagaaatgcctctcatcatgaa
gataccactaaatttgtttgaaatttgagactagcagccctacctgcaga
ctgctacaaaaggcagctaggaagaactgttggccaatgccttgtttcca
ccttacctattttcactattttctctttagtttgatctcagcttctgtgc
ttcattgttgggctgtgtctctcagcagggtcttgcctgatgcttccttc
ctcctcaatgtctgacttctcttccctctaaagcaagcactttgattcct
gctttgctcatcctcaccttcctgcccattccctcttgtttccctactta
ctgccgcacttaacctaaaaaaacgacaagttacattttccccattcaga
acccagtgctgctgcctcaggccccataaggggcacagttgaagtctgca
tgtcccttcccagtgcagatgagcaccagcactgctgtctttccatgtta
ctgaagtgaagacactagccaggaaaactcacatcaaacgaaactaggag
aaatgagcagagggagaggaagcagcaaaggacacgctcgtcccaacaga
ttcatagagcacagaaatgtgcaagcctcagaccacagctcgaggaaacc
cacccaaattcacagcttctcagtcacagaaaggagagctatggaggtag
ctaaaatggtggggaaagccttcagagccctgcattctagaaggatcact
gtccagtaaagactggagagcaggtgagggcaacaaggaaaccagttcag
aaccttgatggaaacattaataaggagatgtcagtcacttggcaagaaat
ttaaaagtgcaggaaaaattcagtgagtaactaagacactgacaaagaaa
caacagaaatgctgcaagtgaaggcatccaaaaaaaaatatataaaaaag
ggcagtggaaagaaggaagcaggcgttggcatgacaggcagagcacggtt
atggacaatatggcttcaagacagtgaatattctcagacataaaaacaaa
accagcagaccgaaacttcaaaccttctgaaatgc
gaattcacctatgggccctccccttgttcacagagcactctgtgtacttc
agtgaacaactgacaagcaagttatgatgtttagtctgggatctttgatg
atcttgtgaacgagcgagggagcttgccaaataacagctgaagatgtttg
ttttcggtgataaaagagcttttgagccagccgtgagagcacttgagtgg
aggcaagtagaccaggaattcgagggcagatcactttctaaactcttcat
ttcacaagtggagtttccaaactctagtgcctttaacactccctgagttt
tctgatgagacttggtactaaggaatgtgatttttacgttgttaatggcc
tgtcaattgagaaaaggataagtaaaattcagaaaaaaaaaacaatattg
tcaaaaagaccaatgcataaaatattcctgactaaaaacctaattaaagc
acaagatgagaggctgatcagtaaggaactgtttggtgagtttccatgaa
cttattaaaataaaatgcccacagttatgctaagggtattaacataagta
ttaaattacaatcattaattattattaaaagcattattaatacataaata
atatcaaaatccaccagtttgttgcttttctctgctctgggaccacaaga
gttttctgtggtttctgttattttgcttctcttgggtacatgctagagat
ctaggcctggcaaatgcaatgcaaactaagccatcctcccgtctccattt
taatggtgggtttattttgaagatgaaaatacaagtcactcaagggcatg
ccgtgtgccacacccactccagtgaaaactgtgtgacaggcctaaagact
ttggatgcagtccctaggcagagtttccacggaaactcggtctcctggga
acctttggcactaatgctccaacctgtcctgccattagtccggtgtatgg
atctgtgtgctttcttttcagtatcattttatttataggttgccctcaag
aaatgatttacttaatacctaattaacggtttgactcttactgtctgaac
ttcaccaatgtcttagccagtcttgagctgaaccctggctgtatttcgta
aagaatgttaattcaatagacgaatgcccgagtgtttgaacagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55375133_55376225
seq2: B6Ng01-306N20.b_50_1135 (reverse)

seq1  GCATTTCAGAGGTTTTGGAAGTTTCCGTCCTGCT-GTTTTGTTTTTATGT  49
      |||||||||| | ||| |||||||| || ||||| |||||||||||||||
seq2  GCATTTCAGAAGGTTT-GAAGTTTCGGT-CTGCTGGTTTTGTTTTTATGT  48

seq1  CTGAGAATA-TCACTGTCTTG-AGCCATA-TGTCCATAACCGTGCTCTGC  96
      ||||||||| ||||||||||| ||||||| ||||||||||||||||||||
seq2  CTGAGAATATTCACTGTCTTGAAGCCATATTGTCCATAACCGTGCTCTGC  98

seq1  CTGGTCATGCCAACGCCTGCTTCCTTTCTTTCCACTGCCTTTTTTTTTTT  146
      || ||||||||||||||||||||| ||||||||||||||     ||||||
seq2  CT-GTCATGCCAACGCCTGCTTCC-TTCTTTCCACTGCC----CTTTTTT  142

seq1  TTTTTTTTTTTTTTGGATTGCCTTTCACTTGCAGCATTTCTGTTTGTTTC  196
       | | |||||||||||| |||| ||||||||||||||||||| |||||||
seq2  ATATATTTTTTTTTGGA-TGCC-TTCACTTGCAGCATTTCTG-TTGTTTC  189

seq1  TTTGTCAGTGTCTTAGTTACTCACTGAATTTTTCCTGCACTTTTAAATTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGTGTCTTAGTTACTCACTGAATTTTTCCTGCACTTTTAAATTT  239

seq1  CTTGCCAAGTGACTGACATCTCCTTATTAATGTTTCCATCAAGGTTCTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAGTGACTGACATCTCCTTATTAATGTTTCCATCAAGGTTCTGA  289

seq1  ACTGGTTTCCTTGTTGCCCTCACCTGCTCTCCAGTCTTTACTGGACAGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTCCTTGTTGCCCTCACCTGCTCTCCAGTCTTTACTGGACAGTG  339

seq1  ATCCTTCTAGAATGCAGGGCTCTGAAGGCTTTCCCCACCATTTTAGCTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTAGAATGCAGGGCTCTGAAGGCTTTCCCCACCATTTTAGCTAC  389

seq1  CTCCATAGCTCTCCTTTCTGTGACTGAGAAGCTGTGAATTTGGGTGGGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGCTCTCCTTTCTGTGACTGAGAAGCTGTGAATTTGGGTGGGTT  439

seq1  TCCTCGAGCTGTGGTCTGAGGCTTGCACATTTCTGTGCTCTATGAATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGAGCTGTGGTCTGAGGCTTGCACATTTCTGTGCTCTATGAATCTG  489

seq1  TTGGGACGAGCGTGTCCTTTGCTGCTTCCTCTCCCTCTGCTCATTTCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACGAGCGTGTCCTTTGCTGCTTCCTCTCCCTCTGCTCATTTCTCC  539

seq1  TAGTTTCGTTTGATGTGAGTTTTCCTGGCTAGTGTCTTCACTTCAGTAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCGTTTGATGTGAGTTTTCCTGGCTAGTGTCTTCACTTCAGTAAC  589

seq1  ATGGAAAGACAGCAGTGCTGGTGCTCATCTGCACTGGGAAGGGACATGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGACAGCAGTGCTGGTGCTCATCTGCACTGGGAAGGGACATGCA  639

seq1  GACTTCAACTGTGCCCCTTATGGGGCCTGAGGCAGCAGCACTGGGTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAACTGTGCCCCTTATGGGGCCTGAGGCAGCAGCACTGGGTTCTG  689

seq1  AATGGGGAAAATGTAACTTGTCGTTTTTTTAGGTTAAGTGCGGCAGTAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAAAATGTAACTTGTCGTTTTTTTAGGTTAAGTGCGGCAGTAAG  739

seq1  TAGGGAAACAAGAGGGAATGGGCAGGAAGGTGAGGATGAGCAAAGCAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAACAAGAGGGAATGGGCAGGAAGGTGAGGATGAGCAAAGCAGGA  789

seq1  ATCAAAGTGCTTGCTTTAGAGGGAAGAGAAGTCAGACATTGAGGAGGAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTGCTTGCTTTAGAGGGAAGAGAAGTCAGACATTGAGGAGGAAG  839

seq1  GAAGCATCAGGCAAGACCCTGCTGAGAGACACAGCCCAACAATGAAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCAGGCAAGACCCTGCTGAGAGACACAGCCCAACAATGAAGCAC  889

seq1  AGAAGCTGAGATCAAACTAAAGAGAAAATAGTGAAAATAGGTAAGGTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAGATCAAACTAAAGAGAAAATAGTGAAAATAGGTAAGGTGGA  939

seq1  AACAAGGCATTGGCCAACAGTTCTTCCTAGCTGCCTTTTGTAGCAGTCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCATTGGCCAACAGTTCTTCCTAGCTGCCTTTTGTAGCAGTCTG  989

seq1  CAGGTAGGGCTGCTAGTCTCAAATTTCAAACAAATTTAGTGGTATCTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGGCTGCTAGTCTCAAATTTCAAACAAATTTAGTGGTATCTTCA  1039

seq1  TGATGAGAGGCATTTCTGTGGAGAAGCTCACTTCCTGTTGGAATTCC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAGGCATTTCTGTGGAGAAGCTCACTTCCTGTTGGAATTCC  1086

seq1: chr19_55242943_55244081
seq2: B6Ng01-306N20.g_68_1214

seq1  GAATTCACCTATGGGCCCTCCCCTTGTTCACAGAGCACTCTGTGTACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTATGGGCCCTCCCCTTGTTCACAGAGCACTCTGTGTACTTC  50

seq1  AGTGAACAACTGACAAGCAAGTTATGATGTTTAGTCTGGGATCTTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAACTGACAAGCAAGTTATGATGTTTAGTCTGGGATCTTTGATG  100

seq1  ATCTTGTGAACGAGCGAGGGAGCTTGCCAAATAACAGCTGAAGATGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGAACGAGCGAGGGAGCTTGCCAAATAACAGCTGAAGATGTTTG  150

seq1  TTTTCGGTGATAAAAGAGCTTTTGAGCCAGCCGTGAGAGCACTTGAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGGTGATAAAAGAGCTTTTGAGCCAGCCGTGAGAGCACTTGAGTGG  200

seq1  AGGCAAGTAGACCAGGAATTCGAGGGCAGATCACTTTCTAAACTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTAGACCAGGAATTCGAGGGCAGATCACTTTCTAAACTCTTCAT  250

seq1  TTCACAAGTGGAGTTTCCAAACTCTAGTGCCTTTAACACTCCCTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGTGGAGTTTCCAAACTCTAGTGCCTTTAACACTCCCTGAGTTT  300

seq1  TCTGATGAGACTTGGTACTAAGGAATGTGATTTTTACGTTGTTAATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGACTTGGTACTAAGGAATGTGATTTTTACGTTGTTAATGGCC  350

seq1  TGTCAATTGAGAAAAGGATAAGTAAAATTCAGAAAAAAAAAACAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTGAGAAAAGGATAAGTAAAATTCAGAAAAAAAAAACAATATTG  400

seq1  TCAAAAAGACCAATGCATAAAATATTCCTGACTAAAAACCTAATTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGACCAATGCATAAAATATTCCTGACTAAAAACCTAATTAAAGC  450

seq1  ACAAGATGAGAGGCTGATCAGTAAGGAACTGTTTGGTGAGTTTCCATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGAGAGGCTGATCAGTAAGGAACTGTTTGGTGAGTTTCCATGAA  500

seq1  CTTATTAAAATAAAATGCCCACAGTTATGCTAAGGGTATTAACATAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAATAAAATGCCCACAGTTATGCTAAGGGTATTAACATAAGTA  550

seq1  TTAAATTACAATCATTAATTATTATTAAAAGCATTATTAATACATAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACAATCATTAATTATTATTAAAAGCATTATTAATACATAAATA  600

seq1  ATATCAAAATCCACCAGTTTGTTGCTTTTCTCTGCTCTGGGACCACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAATCCACCAGTTTGTTGCTTTTCTCTGCTCTGGGACCACAAGA  650

seq1  GTTTTCTGTGGTTTCTGTTATTTTGCTTCTCTTGGGTACATGCTAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTGGTTTCTGTTATTTTGCTTCTCTTGGGTACATGCTAGAGAT  700

seq1  CTAGGCCTGGCAAATGCAATGCAAACTAAGCCATCCTCCCGTCTCCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTGGCAAATGCAATGCAAACTAAGCCATCCTCCCGTCTCCATTT  750

seq1  TAATGGTGGGTTTATTTTGAAGATGAAAATACAAGTCACTCAAGGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGGTTTATTTTGAAGATGAAAATACAAGTCACTCAAGGGCATG  800

seq1  CCGTGTGCCACACCCACTCCAGTGAAAACTGTGTGACAGGCCTAAAGAC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCGTGTGCCACACCCACTCCAGTGAAAACTGTGTGACAGGCCTAAAGACT  850

seq1  TTGGATGCAGTCCCTAGGCAGAGTTT-CACGGAAACTCGGTCTCCT-GGA  897
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TTGGATGCAGTCCCTAGGCAGAGTTTCCACGGAAACTCGGTCTCCTGGGA  900

seq1  ACC-TTGGCACTAATGCTCCAAACCTGTCCCTGCATTAGT-CGGTGTATG  945
      ||| |||||||||||||||| |||||||||   ||||||| |||||||||
seq2  ACCTTTGGCACTAATGCTCC-AACCTGTCCTGCCATTAGTCCGGTGTATG  949

seq1  GATCTGTGTGCTTTC-TTTCAGTATCATTTTA-TTATAGG-TGCCTCCAA  992
      ||||||||||||||| |||||||||||||||| ||||||| ||||  |||
seq2  GATCTGTGTGCTTTCTTTTCAGTATCATTTTATTTATAGGTTGCCCTCAA  999

seq1  GAAATGATTTTACTAATACCTAAATCAC-GTTGAACTC-TACTGTCTGAC  1040
      ||||||||||   |||||||||| | || |||  |||| |||||||||| 
seq2  GAAATGATTTACTTAATACCTAATTAACGGTTTGACTCTTACTGTCTGAA  1049

seq1  CTTCACCAATGTCCTAGGCAGTCCTTGAGCTG-ACCCTGGCCTTGGAATT  1089
      ||||||||||||| ||| |||| ||||||||| ||||||||    | |||
seq2  CTTCACCAATGTCTTAGCCAGT-CTTGAGCTGAACCCTGGC---TGTATT  1095

seq1  TCGT-AAGAATGTT-ATTCATTCAGACGAAATGCCCCAGTGTT--GACAG  1135
      |||| ||||||||| ||||| | ||||| ||||||| ||||||   ||||
seq2  TCGTAAAGAATGTTAATTCAAT-AGACG-AATGCCCGAGTGTTTGAACAG  1143

seq1  TCAG  1139
      ||||
seq2  TCAG  1147