BAC Information

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BAC

Clone NameB6Ng01-307J13
Chromosome19 (Build37)
Map Location 45,022,817 - 45,023,698
singlet/doubletsinglet
Overlap gene6030443O07Rik
Upstream geneCpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752
Downstream geneSema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307J13.bB6Ng01-307J13.g
ACCGA100327GA100328
length886856
definitionB6Ng01-307J13.b B6Ng01-307J13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcagaccagagatccacttgcctctgcctctagaatgctgg
gaccaaagtcatgcagcaccatacctggctaaaatactaagtcagtcgta
cagttggaaattaacactttacctgctgagccatctcctcagcctgagtt
aatccatctttaaagtgtataatatgctaaaattttcactgggcctgtcc
tgttagcaaatgtcattaattccagcgcccgggaggcagagacagacaga
tctctgaatttgaggccagtctggtctacagagcaagtttcaggacagga
ctgcacagagaaactctgtctcaaaaaaaagcacacacaagggctggaga
gatggctcagcggttcagagcactgactgctcttccagaggtcctgagtt
taattcccagcaactacatggtggctcacaaccatctgtaatgggatctg
atgccttcttctggtgtgtctgaagacagcaacagtgtactcatatacat
aaaataaatagataaatgggggggggaaaaaaagctcacacaaatgctga
ttcttcagagtttgccaagtgttttgccttcatattttaagtacaaaatc
atgtgtgtcctaactctttgatattcaatgatccttgtatttcagggaat
ttctaaagaaattttcagtttacagtttgatgctattcctgatcatcatc
caggtgaagaaatatttaatttcctcaattctggaaaaattttcaatcag
tataccttagatttaagagactctggttttattggagaaagtgctgtgga
aaagcttattctccagtaagtaaatcataaatgttttggattttttttcc
ctgtataaaaattttgttctatgggcttggaagata
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggttaacacatatgcgtattcag
aggatggggaaataaattccaaccaaaattcatggaccatctacctcagt
gaaattcttagggagtccagtggtgtgggggcaatgcagagatatttcct
tccctaggtgaaatgattagtttatttgcaacctggccccctcctataac
caagaaataaccaccaacgttttattgggtctaattggattctggagact
aacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45022817_45023698
seq2: B6Ng01-307J13.b_47_932

seq1  GAATTCTCTTCAGACCAGAGATCCACTTGCCTCTGCCTCTAGAATGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGACCAGAGATCCACTTGCCTCTGCCTCTAGAATGCTGG  50

seq1  GACCAAAGTCATGCAGCACCATACCTGGCTAAAATACTAAGTCAGTCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGTCATGCAGCACCATACCTGGCTAAAATACTAAGTCAGTCGTA  100

seq1  CAGTTGGAAATTAACACTTTACCTGCTGAGCCATCTCCTCAGCCTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAAATTAACACTTTACCTGCTGAGCCATCTCCTCAGCCTGAGTT  150

seq1  AATCCATCTTTAAAGTGTATAATATGCTAAAATTTTCACTGGGCCTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCTTTAAAGTGTATAATATGCTAAAATTTTCACTGGGCCTGTCC  200

seq1  TGTTAGCAAATGTCATTAATTCCAGCGCCCGGGAGGCAGAGACAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAAATGTCATTAATTCCAGCGCCCGGGAGGCAGAGACAGACAGA  250

seq1  TCTCTGAATTTGAGGCCAGTCTGGTCTACAGAGCAAGTTTCAGGACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATTTGAGGCCAGTCTGGTCTACAGAGCAAGTTTCAGGACAGGA  300

seq1  CTGCACAGAGAAACTCTGTCTCAAAAAAAAGCACACACAAGGGCTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAGAAACTCTGTCTCAAAAAAAAGCACACACAAGGGCTGGAGA  350

seq1  GATGGCTCAGCGGTTCAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCGGTTCAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTT  400

seq1  TAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCTG  450

seq1  ATGCCTTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCATATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCATATACAT  500

seq1  AAAATAAATAGATAAATGGGGGGGGGAAAAAAAGCTCACACAAATGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAGATAAATGGGGGGGGGAAAAAAAGCTCACACAAATGCTGA  550

seq1  TTCTTCAGAGTTTGCCAAGTGTTTTGCCTTCATATTTTAAGTACAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAGTTTGCCAAGTGTTTTGCCTTCATATTTTAAGTACAAAATC  600

seq1  ATGTGTGTCCTAACTCTTTGATATTCAATGATCCTTGTATTTCAGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCCTAACTCTTTGATATTCAATGATCCTTGTATTTCAGGGAAT  650

seq1  TTCTAAAGAAATTTTCAG-TTACAG-TTGATGCTATTCCTGATCATCATC  698
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TTCTAAAGAAATTTTCAGTTTACAGTTTGATGCTATTCCTGATCATCATC  700

seq1  CAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAG  750

seq1  TATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGA  800

seq1  AAAGCTTATTCTCAAGTAAGTAAATCATAAATG-TTTGGATTTTTTTTCC  847
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  AAAGCTTATTCTCCAGTAAGTAAATCATAAATGTTTTGGATTTTTTTTCC  850

seq1  CTGTATAAAAA-TTTGTTCTAAGGGCTGGAAAGATA  882
      ||||||||||| ||||||||| ||||| | ||||||
seq2  CTGTATAAAAATTTTGTTCTATGGGCTTGGAAGATA  886