BAC Information

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BAC

Clone NameB6Ng01-309E02
Chromosome19 (Build37)
Map Location 45,521,844 - 45,522,643
singlet/doubletsinglet
Overlap geneBtrc
Upstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream geneEG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309E02.bB6Ng01-309E02.g
ACCGA101542GA101543
length1,217800
definitionB6Ng01-309E02.b B6Ng01-309E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccacgaagggacatatgagctgttatgaccatttatgcatag
gttttaaagtaaacatacactttcatttctctggggcaaatgccaaggaa
gacaattgcttagattttttttttatttacttaccaaactttttttcttt
taaaagcacatctttattattttgcatctccaccaacagggtaccaggta
tctggttttctttacatcttgaccagtgctttgatattgtcactattttt
tattttagctgttctagtgtgatattatgatttttaatttttttctgata
gctaatgatgctgaacatatgttcatctgctcatctgccatctgcgtgtc
ctgtttagcaaaatgcccatgtgacgcccacgtccctggcctattacatc
gcttttctactgttgagtttcgagctttatgtagtctagaattagtcttt
tgtcaaatatgtgatttacaaatatcttctagacgctgtcttttgtcctt
ttaatttaatgtcttctgtagaacaaattttaagttaagaaaaactttca
catttatgtgtgtgttttgcctacatgtattggtttgtgggggccagaag
gaggtgtgggaccccccgtaactagagttacagatggttgtcagttgccg
tgaggatgctgggagctgaacctgggttctctagaagagcagccagtgtt
cttgttgagccatctcttcagtcctcaagcttaagattttcatctaaact
actgacttttcctctaatcagctgtgccacatctcagactcttgagctag
ccctgtatggcaggaagaaagctgtttcttgcctgtctcatccatccttt
tcccgagccctgtctcctcacgtcgtcttcagaagcatatgccccacagc
ctctctctctctctctctctctctccaggggatttctcaacacaagacac
ttaattgagcatttgtgtacattctgatggtaaatctgagacagggtagg
atgctcagagtcttttcgttatctgcttctgtttaaggattttattttat
taatatgtagtacactgtagctgtcttcagcccactcaagaaagagggag
tcagattcggttaaaggatggttgtgagccaacaatgtgtgtgtcctgga
atgggacctctctggaccttcgaagaacagcatgcggtgtcctctaacac
cacaactgtagagaact
gaattctcctatccaaggcttccattaacccccactgacagctccaaaca
ggattaagaatttggaagcataaaaaatagttgttctttgcaaatacaca
caatccctttgcattttgagaaaggctgcatctgtagtattcttataatt
agcgtcagacaatgtagcagggggatcaacccacttggcaggttttttga
cttctgtcctagggaggaaggcagtgcggatggcagttagtactctttgg
ttttttcccagggagcactttccattctatctggttcctaccactatgtt
tggatctgtgcaccgctgaaaaatagccccccttgaaagcttggactggg
gttccatagaagttaaacactgtgtgcagactttgtttgatgttgctgtg
gtgtaatagagtgtgccaaatggtgaacttgccagagaagctattgtctg
tggaagcatgccagagaggattattttatgaggatacttcaggtcttccc
taaaaactggtccttggatacaactgaaccttcaataagcttctaaactt
acttacttctcccattaatcccaggaagattcattaatttttttttcaaa
tgcagagtgtggtgggcttttgttttgtctttagagagagtaccttactc
tgtagcacttgctggcctgtgactcactactcagactaggctgcccttga
actttcagtgatcctcctgcctttgcctcccaagtattgggattacagtc
attttctggccagctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45521844_45522643
seq2: B6Ng01-309E02.g_68_867

seq1  GAATTCTCCTATCCAAGGCTTCCATTAACCCCCACTGACAGCTCCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATCCAAGGCTTCCATTAACCCCCACTGACAGCTCCAAACA  50

seq1  GGATTAAGAATTTGGAAGCATAAAAAATAGTTGTTCTTTGCAAATACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGAATTTGGAAGCATAAAAAATAGTTGTTCTTTGCAAATACACA  100

seq1  CAATCCCTTTGCATTTTGAGAAAGGCTGCATCTGTAGTATTCTTATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTTGCATTTTGAGAAAGGCTGCATCTGTAGTATTCTTATAATT  150

seq1  AGCGTCAGACAATGTAGCAGGGGGATCAACCCACTTGGCAGGTTTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGACAATGTAGCAGGGGGATCAACCCACTTGGCAGGTTTTTTGA  200

seq1  CTTCTGTCCTAGGGAGGAAGGCAGTGCGGATGGCAGTTAGTACTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCTAGGGAGGAAGGCAGTGCGGATGGCAGTTAGTACTCTTTGG  250

seq1  TTTTTTCCCAGGGAGCACTTTCCATTCTATCTGGTTCCTACCACTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCAGGGAGCACTTTCCATTCTATCTGGTTCCTACCACTATGTT  300

seq1  TGGATCTGTGCACCGCTGAAAAATAGCCCCCCTTGAAAGCTTGGACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGTGCACCGCTGAAAAATAGCCCCCCTTGAAAGCTTGGACTGGG  350

seq1  GTTCCATAGAAGTTAAACACTGTGTGCAGACTTTGTTTGATGTTGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATAGAAGTTAAACACTGTGTGCAGACTTTGTTTGATGTTGCTGTG  400

seq1  GTGTAATAGAGTGTGCCAAATGGTGAACTTGCCAGAGAAGCTATTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATAGAGTGTGCCAAATGGTGAACTTGCCAGAGAAGCTATTGTCTG  450

seq1  TGGAAGCATGCCAGAGAGGATTATTTTATGAGGATACTTCAGGTCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCATGCCAGAGAGGATTATTTTATGAGGATACTTCAGGTCTTCCC  500

seq1  TAAAAACTGGTCCTTGGATACAACTGAACCTTCAATAAGCTTCTAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGGTCCTTGGATACAACTGAACCTTCAATAAGCTTCTAAACTT  550

seq1  ACTTACTTCTCCCATTAATCCCAGGAAGATTCATTAATTTTTTTTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTCTCCCATTAATCCCAGGAAGATTCATTAATTTTTTTTTCAAA  600

seq1  TGCAGAGTGTGGTGGGCTTTTGTTTTGTCTTTAGAGAGAGTACCTTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTGTGGTGGGCTTTTGTTTTGTCTTTAGAGAGAGTACCTTACTC  650

seq1  TGTAGCACTTGCTGGCCTGTGACTCACTACTCAGACTAGGCTGCCCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACTTGCTGGCCTGTGACTCACTACTCAGACTAGGCTGCCCTTGA  700

seq1  ACTTTCAGTGATCCTCCTGCCTTTGCCTCCCAAGTATTGGGATTACAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTGATCCTCCTGCCTTTGCCTCCCAAGTATTGGGATTACAGTC  750

seq1  ATTTTCTGGCCAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGCCAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  800