BAC Information

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BAC

Clone NameB6Ng01-310A24
Chromosome19 (Build37)
Map Location 8,039,856 - 8,040,833
singlet/doubletsinglet
Overlap geneAB056442
Upstream genePlcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, LOC620946
Downstream geneLOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A24.bB6Ng01-310A24.g
ACCGA102146GA102147
length1,146987
definitionB6Ng01-310A24.b B6Ng01-310A24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaatctttccatgacttttatcacgaagggttgttgtattttg
tcaaatactttgtcagcatctaatgagatgatcatgttgttttttatctt
tgagtttgtttatatagtggattatatagtgcatccttggaattaagcct
acttggtcatgatggatgactattgatgactgcttctatttctttagggg
aaatgggactgtttagatcgccaatgtgatcctgatttaactttggtacc
tggtatctgtctaggacattgtccatttcatccaggttttccagttttgt
tgagtatggccttttgtagtatgatctgatgatgttttggatttcctaag
gttctgttgttatgtctcctatttcatttctgattttgttaattaggata
ctgttcctgtgccctgtagttagtctggctaagggtttatctatcttgtt
gattttctcaaagaaccagcttcttgtttggttgattccttgaatagttc
tttttgtttccacttggttgatttcagccttgactttgattatttcctgc
cgtctactcctcttgggtgaatttgcttcctttagttctagagcttctag
atgtgctgtcaggctgctagtgtatgcactctctagtttcttttgggagg
cactcagtgctatgagttttcttcttaggactgctttcatggtgtcccat
aaatttgggtatgttgtggcttcattttcattaaactctgaaaaatcttt
aatttctttctttatttcatcctttgccaaggtatcactgagtagattgt
tgttcagtttccaagtgaatgttggctttcttttacttatgctgttattg
agaatcagcctttgtctgtggtgatctgataggatgcatgggataatatt
aacatttttgtatctgttaaggccttttttttgtgacccattatatgatg
aatttggagaggtaccatggggtgctgagaagagggtatatccttttgtt
ttaggataaaatgtcttgtagatattctattaatctatttggtttcataa
attctgttcgtgttcaagttggtccttgattagatttattgtcagatctg
gttcatttgtggaagagtacgagtgctgatgtctcttccttatagt
gaattcctgaatcaagagggaagcctagggagattctagatctttcatat
aatttttcatttcctcctcaacgctattgtgacacctcatattgcaatgg
agaactttactgcggccattcctagtcatcgctgctgaatccccatcttt
gacaatgacactgcctctgataatgacaataggatcctgagccaagatga
cctcaggatctctattcccctggactccgacctgagactggagaaatgtc
atcattttgtccaaccacagtggcatcttcatttgaatagcatgttttcc
atgtgtgacagagccagacactgagccctgtgtggatggatgggtgtgtt
acaggagcaacttcttatccactgtgatcgaggtaaggcattccccaaaa
tgatttcattgtggggttttaccaatagtacaaatagtggatattcaatt
agctcagtcttcaactttaagccaacattaattactgatattttaaatgt
gaacatttctcattcttctaatattttattctaaggttgaccacagttta
tgaattaatttatttatcagtgttttctagaatctaagtatgtggaccac
ctgtgtgcttggtacactaagaggtaagaagagggtgttgtatcctagga
aactgaaattagagatgtttgtgagccactatgtatgtgctgagaactga
attctggttctttgcagcagcagtaagtgctctctattgtttaggtatct
cttcaacctaaatctcttcaatgaattattaattcattttttagcaaatc
cttatgtgccttcttgggacatgtttatgacaggacagtgttattcagcc
ctcaatttaaaatttaaaagaaatgggtgattatataaaaccacaaggtc
agctacgctattgctcaaaaggaagagtgattatgtttcatgtgtgtgac
tcaggattccttttatcaagcctttgtcctaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8039856_8040833
seq2: B6Ng01-310A24.g_68_1054 (reverse)

seq1  TTTTCTTA-GAC-AAGGC-TGATAAA--GGATCCTGAGTCACACACATGA  45
      |||||||| ||| ||||| |||||||  | ||||||||||||||||||||
seq2  TTTTCTTAGGACAAAGGCTTGATAAAAGGAATCCTGAGTCACACACATGA  50

seq1  AACATAATCACTCTTCC-TTTGAGCAATAGCCTTAGCTGACCTTGTGGTT  94
      ||||||||||||||||| |||||||||||| | |||||||||||||||||
seq2  AACATAATCACTCTTCCTTTTGAGCAATAG-CGTAGCTGACCTTGTGGTT  99

seq1  TTATATAATCACCCATTTCTTTTAAATTTTAAATTGA-GGCTGAATAACA  143
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATATAATCACCCATTTCTTTTAAATTTTAAATTGAGGGCTGAATAACA  149

seq1  CTGTCCTGTCAT-AACATGT-CCAAGAAGGCACATAAGGATTTGCT-AAA  190
      |||||||||||| ||||||| ||||||||||||||||||||||||| |||
seq2  CTGTCCTGTCATAAACATGTCCCAAGAAGGCACATAAGGATTTGCTAAAA  199

seq1  AATGAATTAATAATTCATTGAAGAGATTTAGGTTGAAGAGATACCTAAAC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTAATAATTCATTGAAGAGATTTAGGTTGAAGAGATACCTAAAC  249

seq1  AATAGAGAGCACTTACTGCTGCTGCAAAGAACCAGAATTCAGTTCTCAGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAGCACTTACTGCTGCTGCAAAGAACCAGAATTCAGTTCTCAGC  299

seq1  ACATACATAGTGGCTCACAAACATCTCTAATTTCAGTTTCCTAGGATACA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATAGTGGCTCACAAACATCTCTAATTTCAGTTTCCTAGGATACA  349

seq1  ACACCCTCTTCTTACCTCTTAGTGTACCAAGCACACAGGTGGTCCACATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCTTCTTACCTCTTAGTGTACCAAGCACACAGGTGGTCCACATA  399

seq1  CTTAGATTCTAGAAAACACTGATAAATAAATTAATTCATAAACTGTGGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTCTAGAAAACACTGATAAATAAATTAATTCATAAACTGTGGTC  449

seq1  AACCTTAGAATAAAATATTAGAAGAATGAGAAATGTTCACATTTAAAATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGAATAAAATATTAGAAGAATGAGAAATGTTCACATTTAAAATA  499

seq1  TCAGTAATTAATGTTGGCTTAAAGTTGAAGACTGAGCTAATTGAATATCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTAATGTTGGCTTAAAGTTGAAGACTGAGCTAATTGAATATCC  549

seq1  ACTATTTGTACTATTGGTAAAACCCCACAATGAAATCATTTTGGGGAATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTACTATTGGTAAAACCCCACAATGAAATCATTTTGGGGAATG  599

seq1  CCTTACCTCGATCACAGTGGATAAGAAGTTGCTCCTGTAACACACCCATC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTCGATCACAGTGGATAAGAAGTTGCTCCTGTAACACACCCATC  649

seq1  CATCCACACAGGGCTCAGTGTCTGGCTCTGTCACACATGGAAAACATGCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACAGGGCTCAGTGTCTGGCTCTGTCACACATGGAAAACATGCT  699

seq1  ATTCAAATGAAGATGCCACTGTGGTTGGACAAAATGATGACATTTCTCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGAAGATGCCACTGTGGTTGGACAAAATGATGACATTTCTCCA  749

seq1  GTCTCAGGTCGGAGTCCAGGGGAATAGAGATCCTGAGGTCATCTTGGCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTCGGAGTCCAGGGGAATAGAGATCCTGAGGTCATCTTGGCTC  799

seq1  AGGATCCTATTGTCATTATCAGAGGCAGTGTCATTGTCAAAGATGGGGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTATTGTCATTATCAGAGGCAGTGTCATTGTCAAAGATGGGGAT  849

seq1  TCAGCAGCGATGACTAGGAATGGCCGCAGTAAAGTTCTCCATTGCAATAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCGATGACTAGGAATGGCCGCAGTAAAGTTCTCCATTGCAATAT  899

seq1  GAGGTGTCACAATAGCGTTGAGGAGGAAATGAAAAATTATATGAAAGATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCACAATAGCGTTGAGGAGGAAATGAAAAATTATATGAAAGATC  949

seq1  TAGAATCTCCCTAGGCTTCCCTCTTGATTCAGGAATTC  978
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTCCCTAGGCTTCCCTCTTGATTCAGGAATTC  987