BAC Information

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BAC

Clone NameB6Ng01-312A19
Chromosome19 (Build37)
Map Location 52,360,571 - 52,361,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312A19.bB6Ng01-312A19.g
ACCGA103615GA103616
length1,1981,088
definitionB6Ng01-312A19.b B6Ng01-312A19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccatttttaatggtgttatttgattt
tctggagtccagcttcttgagttgtttgtatatattagatattagtcccc
tatcagatttagggttgttaaagatcctttccttatctgttgattgctat
tttgtcttattgacagtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgttgattctcaatcttacagcacaagccattcttgttt
tgttcaagaatttttcccatgtgcccatatcttcaaggcttttctctact
ttctcctttataatttttagtgtttctggatttatgtggagtcccttgat
ccacttagacctgagctttgtaaaaggagataagaatgtatcaattcaca
ttcttctacatgataacctccagttgagcaagcaccatttgttgaaaatg
ctgtcttttttttccccactggatggttttagctcctttgtcaaagatca
agtgaccatagatatgtggtttcatttctgggtcttcaattctattgcaa
tgatctgtctgtctgtcgctgtaccagtaccatgcagtgttttttattag
gtattttcttcatttacatttccagtgctatcccaaaagtcacccatacc
ctcccctcccactcccctacccacccactcccacttcttggccctggcat
tcccttgtactgaggaatataaagtttgcatgaccaatggcctctctttt
ccactgatggccaactaggccaccttctgatacatatgcagctagagaca
tgagctccaggggtactggttagttcatattgttgttccacctatagggt
tgcagatccctttagctccttgggtactttctctagctcctccattggga
gccctgtgatccaaccaatagctgactgtgagcatccacttctgtgttgc
tagccccggcatatctcacaaatgacagctatatctgggtcctttcagcc
aaatctgctagtgttatgcaatggtgtcagacttggagctgattatggat
ggatccctgatatggagtctcctagatggtcaatcctcatctcagcctca
aacgtgtgtctcttgtaacctcttcattgatgattgttccaattcagatg
atcagtccccaacatggctttgcgtctctgtggagatttactcagtgt

gaattctaagataacaagaatgagtcaatcatcagaacatacattttaaa
tataagataaaattacattgtatgggctgagcagattattattatgcatt
tatgtcagcagttaaaggaatagagtccatgtatttgaaagaaaataaag
gagtggtttgtaggaaggattgaaagaagaaggggaaggtaggaaaccat
atcactatattttaatttcaaaagatagagaactaaaaaagaatttggct
tataaaaatatatcaaaactggcttatggtgaagttctggagtggaaatt
tctggtttctcagttgtgtcaagtgatatttttttttgaaaactgtctta
taagagaatatttttgctgaagcaggtaggtggggggatgttttgctgag
aacagacgtgtggaatttttctagaagctacattgaaagaggacatgtaa
cgttttgctagagtagatgcttgagagaacacgtgatatttggaaagggt
ataaataaaacccaacagacaggggatgacaattggtttgccttgccaca
gttttgtttttaacattatttgacatgacttcatagaaagaaatgcacca
aagaacttctggtggtattcctgtagtttctcaccgcttccttggactaa
ggctggttggcagagcctcgaggtttcttctggattgaactgccaccatt
attgatttgtgaatggcatttgttaaaggatccagatactgcttctgatt
catgggaattgaactgctgacatcctgataatgcagattggatttggtcc
aaagacctgtttctaaacaggttcacatcctccttttcccccttagcctt
tctaatgcctctggtggatggtgagctagaaagggaggttaaaacattta
ggtgcacttatttaaagcagggtttgaaaaatatgtctacaaggtttaat
cttcaagatcccactagcaattcctttccctgtcagatgacatgagcaat
attcttctaacaaggatgtttgtaatcctacccagaaatactttatggct
ccacacacttcttatttaatcatctgtaaactcaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52360571_52361651
seq2: B6Ng01-312A19.g_65_1152

seq1  GAATTCTAAGATAACAAGAATGAGTCAATCATCAGAACATACATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATAACAAGAATGAGTCAATCATCAGAACATACATTTTAAA  50

seq1  TATAAGATAAAATTACATTGTATGGGCTGAGCAGATTATTATTATGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATAAAATTACATTGTATGGGCTGAGCAGATTATTATTATGCATT  100

seq1  TATGTCAGCAGTTAAAGGAATAGAGTCCATGTATTTGAAAGAAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGCAGTTAAAGGAATAGAGTCCATGTATTTGAAAGAAAATAAAG  150

seq1  GAGTGGTTTGTAGGAAGGATTGAAAGAAGAAGGGGAAGGTAGGAAACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTTGTAGGAAGGATTGAAAGAAGAAGGGGAAGGTAGGAAACCAT  200

seq1  ATCACTATATTTTAATTTCAAAAGATAGAGAACTAAAAAAGAATTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATATTTTAATTTCAAAAGATAGAGAACTAAAAAAGAATTTGGCT  250

seq1  TATAAAAATATATCAAAACTGGCTTATGGTGAAGTTCTGGAGTGGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATATATCAAAACTGGCTTATGGTGAAGTTCTGGAGTGGAAATT  300

seq1  TCTGGTTTCTCAGTTGTGTCAAGTGATATTTTTTTTTGAAAACTGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTCAGTTGTGTCAAGTGATATTTTTTTTTGAAAACTGTCTTA  350

seq1  TAAGAGAATATTTTTGCTGAAGCAGGTAGGTGGGGGGATGTTTTGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAATATTTTTGCTGAAGCAGGTAGGTGGGGGGATGTTTTGCTGAG  400

seq1  AACAGACGTGTGGAATTTTTCTAGAAGCTACATTGAAAGAGGACATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACGTGTGGAATTTTTCTAGAAGCTACATTGAAAGAGGACATGTAA  450

seq1  CGTTTTGCTAGAGTAGATGCTTGAGAGAACACGTGATATTTGGAAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGCTAGAGTAGATGCTTGAGAGAACACGTGATATTTGGAAAGGGT  500

seq1  ATAAATAAAACCCAACAGACAGGGGATGACAATTGGTTTGCCTTGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAACCCAACAGACAGGGGATGACAATTGGTTTGCCTTGCCACA  550

seq1  GTTTTGTTTTTAACATTATTTGACATGACTTCATAGAAAGAAATGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTAACATTATTTGACATGACTTCATAGAAAGAAATGCACCA  600

seq1  AAGAACTTCTGGTGGTATTCCTGTAGTTTCTCACCGCTTCCTTGGACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCTGGTGGTATTCCTGTAGTTTCTCACCGCTTCCTTGGACTAA  650

seq1  GGCTGGTTGGCAGAGCCTCGAGGTTTCTTCTGGATTGAACTGCCACCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTGGCAGAGCCTCGAGGTTTCTTCTGGATTGAACTGCCACCATT  700

seq1  ATTGATTTGTGAATGGCATTTGTTAAAGGATCCAGATACTGCTTCTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGTGAATGGCATTTGTTAAAGGATCCAGATACTGCTTCTGATT  750

seq1  CATGGGAATTGAACTGCTGACATCCTGATAATGCAGATTGGATTTGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAATTGAACTGCTGACATCCTGATAATGCAGATTGGATTTGGTCC  800

seq1  AAAGACCTGTTTCTAAACAGGTTCACATCCTCCTTTTCCCCCTTAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGTTTCTAAACAGGTTCACATCCTCCTTTTCCCCCTTAGCCTT  850

seq1  TCTAATGCCTCTGGTGGATGGTGAGCTAG-AAGGGAGGTTAAAACATTTA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTAATGCCTCTGGTGGATGGTGAGCTAGAAAGGGAGGTTAAAACATTTA  900

seq1  GGTGCACTTA-TTAAAGCAGGGTTTGAAAAATATGTCTACAAGGTTTAAT  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTTATTTAAAGCAGGGTTTGAAAAATATGTCTACAAGGTTTAAT  950

seq1  CTTCAAGATCCCACTAGCAAATTCCTTCCCTGTCAGATGACATGAGCAAT  998
      |||||||||||||||||||| | | |||||||||||||||||||||||||
seq2  CTTCAAGATCCCACTAGCAATTCCTTTCCCTGTCAGATGACATGAGCAAT  1000

seq1  A-TCTCCT-ACAGGGTTGTTTTGTAAT-CTA-CCAGAAATACTTTATGGC  1044
      | ||| || ||| || || |||||||| ||| ||||||||||||||||||
seq2  ATTCTTCTAACAAGGATG-TTTGTAATCCTACCCAGAAATACTTTATGGC  1049

seq1  T-CACACAC-TCTATTTAAATCATCTGTAAACTCACCAC  1081
      | ||||||| |||  || |||||||||||||||||||||
seq2  TCCACACACTTCTTATTTAATCATCTGTAAACTCACCAC  1088


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