BAC Information

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BAC

Clone NameB6Ng01-312I19
Chromosome19 (Build37)
Map Location 25,713,998 - 25,888,783
singlet/doubletdoublet
Overlap geneDmrt2, EG667806
Upstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I19.bB6Ng01-312I19.g
ACCGA103991GA103992
length1,1211,153
definitionB6Ng01-312I19.b B6Ng01-312I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,713,998 - 25,715,125)(25,887,623 - 25,888,783)
sequence
gaattctatagagaagtcaaggttatttctagatatcattttctatttta
aaaaatttgtattctttttaattttgcatgtgtctgtgtgtgagtgtgtg
cccacgagtgcccagggggcattaatacccctgacctggagttataggta
tttgtgagctctctgccgcgggtgctggaaatggaactcagctcctctgc
aagagcagtctttgcttttaaccgctgagccatctctttagctcccaggt
atcggcaggaatgggcagggttgagacggggtctctctattatatagcgc
tagctgatatggaacttgcaatgtagtctaggctgacctcaaattcacag
agatccacctggccctgcctcctgagtgctaggataaaaggcacgcacca
ccacgcccagcccagatatctttttttttttaatgttatggtcctttatt
tatttattagtcccagcacttgggaggcagatgtaggcaaatctctttga
gttccaggacagcctggtctagacagtgagttccaggacagccagggctg
ttgtacagggaaactctgtcttgggaaaccaaaccaaataaataaattca
ttcacacagccatgaataaattcttctgggacactctctcccaaaccctc
caacttgcagcgaaggacttcagccacttctgttcatcctcacccataga
aagagagcagactgcagaaccagcattggagggacctttagctaccagag
gaaaggctttcttgagaatgtctgatattttgagagcactccaggcctgg
gctcagcagcgaggcctgaagcccttggcctcatgttcctgaagtacaca
ggaagaagaaggaagagatagagaaagcctttcaatgatggaccaagcta
gtacctgacacctcagtgagccagtgaacctcacggttcatctcttatca
attcagcagattcagggtttaagttcaccgtttgaatgccagcatgctct
tagagctggcatagccaaggaaagaaaagagggtggaagatcaccatagt
agtgcctgggagtctgagtagattgatctggaataaatacgaataagaca
aattacaaactgggatacgta
gaattctgctcatattcaaaacatgattgactctcgtatttacaccctgt
ggaatgagtgtcattgtctgaagatgcccattgttacataaacccaaagt
gttcatcttcctgtgtcctttctgcaaagttgtaggtcactaatgcctct
cttcagtcattagctgacctgggagaggcagaatcagagtctgtaagtct
caaaagaaagctttcaacaaattctttccacttgtttgagcttatttagt
gattcttaaaaaaaaaaaaaaattaagtgtaacattccacaaacccactg
acaccaacaccatttattcttcaagcacctggcttagttgcgaagagaga
gtggcagggcaggaagactggactgaagggattgagccctggcctgtttt
cacttatgaaaccatctccccagcaggcagatggagaagcaggccagagc
cccccggaggcatcaatctgcttgaatgaatgtgttagtcttcggaatct
gaacgctgagcttaaacacttgcactgggagaaaacgcaatgtgtctggc
tatgtggcgtagagtttcggggaaaccaaggcatgtggttgacttgacag
agcatatctggatgccataaatcaccactttgtatgtgttccttacaatg
gtcatacagagggaacatgagcattgttataatattagaaccatctccac
ttcctgggtattttttaatacctggcttattgaattaattatccattttt
ccatgtctttttttttttagctgtttgctttaccatattccaaagttact
ctcattcgcatatgccaatttagaaaaatagaatttagcaaaagtctcat
gcaattagcaaattttagcagaaaacaaacatgaaattttagtatgtaac
atgttatgtgcacatatctgatttttactttatgaacagcaggaaaaaag
gtatgtctatttaaattaatagtgatattataatagttgaaaatcacttt
aatgaaaaataataaaaatgcattggaagaaaaatgacagagattattaa
gaaaacactaaaaattaggggctaaatgaaaatacatgccactactgaat
gaaaatataatatttataattgatgtcaaagtcatgttatgggaaggctt
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25713998_25715125
seq2: B6Ng01-312I19.b_47_1167

seq1  GAATTCTATAGAGAAGTCAAGGTTATTTCTAGATATCATTTTCTATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGAGAAGTCAAGGTTATTTCTAGATATCATTTTCTATTTTA  50

seq1  AAAAATTTGTATTCTTTTTAATTTTGCATGTGTCTGTGTGTGAGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGTATTCTTTTTAATTTTGCATGTGTCTGTGTGTGAGTGTGTG  100

seq1  CCCACGAGTGCCCAGGGGGCATTAATACCCCTGACCTGGAGTTATAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGAGTGCCCAGGGGGCATTAATACCCCTGACCTGGAGTTATAGGTA  150

seq1  TTTGTGAGCTCTCTGCCGCGGGTGCTGGAAATGGAACTCAGCTCCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGCTCTCTGCCGCGGGTGCTGGAAATGGAACTCAGCTCCTCTGC  200

seq1  AAGAGCAGTCTTTGCTTTTAACCGCTGAGCCATCTCTTTAGCTCCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCTTTGCTTTTAACCGCTGAGCCATCTCTTTAGCTCCCAGGT  250

seq1  ATCGGCAGGAATGGGCAGGGTTGAGACGGGGTCTCTCTATTATATAGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCAGGAATGGGCAGGGTTGAGACGGGGTCTCTCTATTATATAGCGC  300

seq1  TAGCTGATATGGAACTTGCAATGTAGTCTAGGCTGACCTCAAATTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATATGGAACTTGCAATGTAGTCTAGGCTGACCTCAAATTCACAG  350

seq1  AGATCCACCTGGCCCTGCCTCCTGAGTGCTAGGATAAAAGGCACGCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACCTGGCCCTGCCTCCTGAGTGCTAGGATAAAAGGCACGCACCA  400

seq1  CCACGCCCAGCCCAGATATCTTTTTTTTTTTAATGTTATGGTCCTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCAGCCCAGATATCTTTTTTTTTTTAATGTTATGGTCCTTTATT  450

seq1  TATTTATTAGTCCCAGCACTTGGGAGGCAGATGTAGGCAAATCTCTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTAGTCCCAGCACTTGGGAGGCAGATGTAGGCAAATCTCTTTGA  500

seq1  GTTCCAGGACAGCCTGGTCTAGACAGTGAGTTCCAGGACAGCCAGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCTGGTCTAGACAGTGAGTTCCAGGACAGCCAGGGCTG  550

seq1  TTGTACAGGGAAACTCTGTCTTGGGAAACCAAACCAAATAAATAAATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGGGAAACTCTGTCTTGGGAAACCAAACCAAATAAATAAATTCA  600

seq1  TTCACACAGCCATGAATAAATTCTTCTGGGACACTCTCTCCCAAACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGCCATGAATAAATTCTTCTGGGACACTCTCTCCCAAACCCTC  650

seq1  CAACTTGCAGCGAAGGACTTCAGCCACTTCTGTTCATCCTCACCCATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCAGCGAAGGACTTCAGCCACTTCTGTTCATCCTCACCCATAGA  700

seq1  AAGAGAGCAGACTGCAGAACCAGCATTGGAGGGACCTTTAGCTACCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGACTGCAGAACCAGCATTGGAGGGACCTTTAGCTACCAGAG  750

seq1  GAAAGGCTTTCTTGAGAATGTCTGATATTTTGAGAGCACTCCAGGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTTCTTGAGAATGTCTGATATTTTGAGAGCACTCCAGGCCTGG  800

seq1  GCTCAGCAGCGAGGCCTGAAGCCCTTGGCCTCATGTTCCTGAAGTACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGCGAGGCCTGAAGCCCTTGGCCTCATGTTCCTGAAGTACACA  850

seq1  GGAAGAAGAAGGAAGAGATAGAGAAAGCCTTTCAATGATGGACCAAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAAGGAAGAGATAGAGAAAGCCTTTCAATGATGGACCAAGCTA  900

seq1  GTACCTGACACCTCAGGTGAGCCAGTGAACCTCAC-GTTCATCTCTTATC  949
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  GTACCTGACACCTCA-GTGAGCCAGTGAACCTCACGGTTCATCTCTTATC  949

seq1  AATTCAGGCAAGATTCAGGGTTTAAGGTTCACCGTTTGAATGCCAGGCAT  999
      |||||||   ||||||||||||||| ||||||||||||||||||| ||||
seq2  AATTCAG--CAGATTCAGGGTTTAA-GTTCACCGTTTGAATGCCA-GCAT  995

seq1  GGCTCTAGGAAGCTGGCATAGCAAAGGGACAGAAAGAGGGTG--AGATCA  1047
       |||||  | |||||||||||| |||| |   ||||||||||  ||||||
seq2  -GCTCTTAG-AGCTGGCATAGCCAAGGAAAGAAAAGAGGGTGGAAGATCA  1043

seq1  -CATAGTAGTGCCTGGGAGGTCTGGAAGTAGATTTGAATCTGGGAATAAA  1096
       ||||||||||||||||| |||||  ||||||||   |||| ||||||||
seq2  CCATAGTAGTGCCTGGGA-GTCTG--AGTAGATT--GATCT-GGAATAAA  1087

seq1  TACGAATAAGACAAATTACAAACTGG--TACGTA  1128
      ||||||||||||||||||||||||||  ||||||
seq2  TACGAATAAGACAAATTACAAACTGGGATACGTA  1121

seq1: chr19_25887623_25888783
seq2: B6Ng01-312I19.g_66_1218 (reverse)

seq1  AGTAAGCCTTCCCATAAATTTGACATTTTGACAATTCCAATTATTAAATA  50
      ||||||||||||||| ||  ||||  |||||||    |||||| ||||||
seq2  AGTAAGCCTTCCCAT-AACATGAC--TTTGACA---TCAATTA-TAAATA  43

seq1  TTAATTATTTTCATCAAGGTAGTTGCATGTATTTTCATTTAGCCCCCCTA  100
      |||  |||||||||  | ||||| ||||||||||||||||||  ||||||
seq2  TTA--TATTTTCATTCA-GTAGTGGCATGTATTTTCATTTAG--CCCCTA  88

seq1  AATTTTAGTG-TTTCTTAATAATCTCCTGTCA-TTTTCTTCAAATGCATT  148
      | |||||||| |||||||||||||| |||||| |||||||| ||||||||
seq2  ATTTTTAGTGTTTTCTTAATAATCT-CTGTCATTTTTCTTCCAATGCATT  137

seq1  TTTA-TATTTTCCATTAAAGTGATTTTCAACTATTAT-ATATCACTATTA  196
      |||| |||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TTTATTATTTTTCATTAAAGTGATTTTCAACTATTATAATATCACTATTA  187

seq1  ATTTAAATAGACATACCTTTTTTCCTGCTGTTCATAAAGTAAAAATCAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAGACATACCTTTTTTCCTGCTGTTCATAAAGTAAAAATCAGA  237

seq1  TATGTGCACATAACATGTTACATACTAAAATTTCATGTTTGTTTTCTGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCACATAACATGTTACATACTAAAATTTCATGTTTGTTTTCTGCT  287

seq1  AAAATTTGCTAATTGCATGAGACTTTTGCTAAATTCTATTTTTCTAAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGCTAATTGCATGAGACTTTTGCTAAATTCTATTTTTCTAAATT  337

seq1  GGCATATGCGAATGAGAGTAACTTTGGAATATGGTAAAGCAAACAGCT-A  395
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCATATGCGAATGAGAGTAACTTTGGAATATGGTAAAGCAAACAGCTAA  387

seq1  AAAAAAAAAGACATGGAAAAATGGATAATTAATTCAATAAGCCAGGTATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGACATGGAAAAATGGATAATTAATTCAATAAGCCAGGTATT  437

seq1  AAAAAATACCCAGGAAGTGGAGATGGTTCTAATATTATAACAATGCTCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACCCAGGAAGTGGAGATGGTTCTAATATTATAACAATGCTCAT  487

seq1  GTTCCCTCTGTATGACCATTGTAAGGAACACATACAAAGTGGTGATTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTGTATGACCATTGTAAGGAACACATACAAAGTGGTGATTTAT  537

seq1  GGCATCCAGATATGCTCTGTCAAGTCAACCACATGCCTTGGTTTCCCCGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGATATGCTCTGTCAAGTCAACCACATGCCTTGGTTTCCCCGA  587

seq1  AACTCTACGCCACATAGCCAGACACATTGCGTTTTCTCCCAGTGCAAGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACGCCACATAGCCAGACACATTGCGTTTTCTCCCAGTGCAAGTG  637

seq1  TTTAAGCTCAGCGTTCAGATTCCGAAGACTAACACATTCATTCAAGCAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCAGCGTTCAGATTCCGAAGACTAACACATTCATTCAAGCAGA  687

seq1  TTGATGCCTCCGGGGGGCTCTGGCCTGCTTCTCCATCTGCCTGCTGGGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCTCCGGGGGGCTCTGGCCTGCTTCTCCATCTGCCTGCTGGGGA  737

seq1  GATGGTTTCATAAGTGAAAACAGGCCAGGGCTCAATCCCTTCAGTCCAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCATAAGTGAAAACAGGCCAGGGCTCAATCCCTTCAGTCCAGT  787

seq1  CTTCCTGCCCTGCCACTCTCTCTTCGCAACTAAGCCAGGTGCTTGAAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCCCTGCCACTCTCTCTTCGCAACTAAGCCAGGTGCTTGAAGAA  837

seq1  TAAATGGTGTTGGTGTCAGTGGGTTTGTGGAATGTTACACTTAATTTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTGTTGGTGTCAGTGGGTTTGTGGAATGTTACACTTAATTTTTT  887

seq1  TTTTTTTTTAAGAATCACTAAATAAGCTCAAACAAGTGGAAAGAATTTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGAATCACTAAATAAGCTCAAACAAGTGGAAAGAATTTGT  937

seq1  TGAAAGCTTTCTTTTGAGACTTACAGACTCTGATTCTGCCTCTCCCAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTTCTTTTGAGACTTACAGACTCTGATTCTGCCTCTCCCAGGT  987

seq1  CAGCTAATGACTGAAGAGAGGCATTAGTGACCTACAACTTTGCAGAAAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATGACTGAAGAGAGGCATTAGTGACCTACAACTTTGCAGAAAGG  1037

seq1  ACACAGGAAGATGAACACTTTGGGTTTATGTAACAATGGGCATCTTCAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAAGATGAACACTTTGGGTTTATGTAACAATGGGCATCTTCAGA  1087

seq1  CAATGACACTCATTCCACAGGGTGTAAATACGAGAGTCAATCATGTTTTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACACTCATTCCACAGGGTGTAAATACGAGAGTCAATCATGTTTTG  1137

seq1  AATATGAGCAGAATTC  1161
      ||||||||||||||||
seq2  AATATGAGCAGAATTC  1153