BAC Information

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BAC

Clone NameB6Ng01-313H08
Chromosome19 (Build37)
Map Location 49,195,767 - 49,350,859
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313H08.bB6Ng01-313H08.g
ACCGA104668GA104669
length1,178129
definitionB6Ng01-313H08.b B6Ng01-313H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,349,671 - 49,350,859)(49,195,767 - 49,195,895)
sequence
gaattcaaggcctgtattacagcaggatgctttctggagaagggaaaaga
aaatctgcctccagtgggactccaacatcagaaagcctgtatacaggcat
caattaccactgatactacaatgggagataaaatgtgctcactctgaagg
agctgtggatatgaattgtcagtgataaaagactgctaacgacagccact
gtctgtgtcaactctatgagtgatcttctgagcacttgaggacattgctt
taacactaaagtctgcccatatttctgccttcactttccactagagaaac
aacgtgtcacttcttccaaggttcaacatcagtgttctagagaagtcttc
cttggaatatgtagagaaaaggctcatggctatattgttttaaattatcc
acctaacaaggaaaagagaaagacctagtcataatgctcagttgacaaat
gagcattgccaatgtgatgggggaagtgcagaaggaagtcacaaaccctg
ttcaaggacacaccactcagtactggtttagcaggagtgccaggggtagc
aaccatgagggtctcattctaaagtttgctccactgacaaacctgactct
aaaacaagtcagcttagaaagccataaaactcttccaagagaagccatga
cttgcctcagtctgtagggttctgggaggtagatagcaagagcctgggga
atagttcaaacacttgaagtagccttcatgctagagtaaaccgaatcagg
tggaagaagagtaaatatgaatttacttttttgttatatcttgtcacttg
tctccagtccccagagcactctggacagtgaatacataattgctgaacat
agtgaaagtaacctgtaaccctgccgtgttttgagcatctggatccctct
gggcagtagctatggactgaaaagggcacatgttacacttctgccttctg
ttatccaccctcccctccctgccctgtaaagtcaaggtgaacaggaaaag
aagttcagagccggcaaggttaatcttaacattatatcactggctagtgt
aagatagtcaatttagagtggagactttctaatctttttctttttataat
ttaaatacactttttcccatctggtgctaagcagatctgaacaggtaagg
aatggaagaaacgaatgtaagcacacag

aaagtcagaagctcaactctggcagagcagtgatgtattaatacaatgca
ttgatacacacatagagagaggggaaagggaaggaggaagggagagggag
aaaggtagagagggagttattgagagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49349671_49350859
seq2: B6Ng01-313H08.b_47_1224 (reverse)

seq1  CTGTGTTGCTTACCATTCTGTTTCTTCTCAT--CTTACCCTGTTCAGATC  48
      ||||| |||||| ||||| |||||||| |||  |||| ||||||||||||
seq2  CTGTG-TGCTTA-CATTC-GTTTCTTC-CATTCCTTA-CCTGTTCAGATC  45

seq1  TTCCTAGGCACAGATGGGGGAAAAAAGTGTATTTAAATTATAAAAAGGAA  98
      | | |||   ||||||||   |||||||||||||||||||||||||| ||
seq2  TGCTTAGCACCAGATGGG---AAAAAGTGTATTTAAATTATAAAAAGAAA  92

seq1  AAGATTAAGAAAGTCT-CACTCTAAATTGACCTATCTTACACTAAGCCAG  147
      |||||| ||||||||| ||||||||||||| |||||||||||| ||||||
seq2  AAGATT-AGAAAGTCTCCACTCTAAATTGA-CTATCTTACACT-AGCCAG  139

seq1  TGATATAATTGTTAAGATTAACCCTTGCCGGCTCTGAAC-TCTTTTCCTG  196
      |||||||| |||||||||||| ||||||||||||||||| ||||||||| 
seq2  TGATATAA-TGTTAAGATTAA-CCTTGCCGGCTCTGAACTTCTTTTCCT-  186

seq1  GTTCACCTTGACTTTTACAGGGCAGGGAGGGGAGGGTGGATAACAGAAGG  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTTGAC-TTTACAGGGCAGGGAGGGGAGGGTGGATAACAGAAGG  235

seq1  CAGAAGTGTAACATGTGCCCTTTTCAGTCCATAGCTACTGCCCAGAGGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGTAACATGTGCCCTTTTCAGTCCATAGCTACTGCCCAGAGGGA  285

seq1  TCCAGATGCTCAAAACACGGCAGGGTTACAGGTTACTTTCACTATGTTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGCTCAAAACACGGCAGGGTTACAGGTTACTTTCACTATGTTCA  335

seq1  GCAATTATGTATTCACTGTCCAGAGTGCTCTGGGGACTGGAGACAAGTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATGTATTCACTGTCCAGAGTGCTCTGGGGACTGGAGACAAGTGA  385

seq1  CAAGATATAACAAAAAAGTAAATTCATATTTACTCTTCTTCCACCTGATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATAACAAAAAAGTAAATTCATATTTACTCTTCTTCCACCTGATT  435

seq1  CGGTTTACTCTAGCATGAAGGCTACTTCAAGTGTTTGAACTATTCCCCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTACTCTAGCATGAAGGCTACTTCAAGTGTTTGAACTATTCCCCAG  485

seq1  GCTCTTGCTATCTACCTCCCAGAACCCTACAGACTGAGGCAAGTCATGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCTATCTACCTCCCAGAACCCTACAGACTGAGGCAAGTCATGGC  535

seq1  TTCTCTTGGAAGAGTTTTATGGCTTTCTAAGCTGACTTGTTTTAGAGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGGAAGAGTTTTATGGCTTTCTAAGCTGACTTGTTTTAGAGTCA  585

seq1  GGTTTGTCAGTGGAGCAAACTTTAGAATGAGACCCTCATGGTTGCTACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCAGTGGAGCAAACTTTAGAATGAGACCCTCATGGTTGCTACCC  635

seq1  CTGGCACTCCTGCTAAACCAGTACTGAGTGGTGTGTCCTTGAACAGGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTCCTGCTAAACCAGTACTGAGTGGTGTGTCCTTGAACAGGGTT  685

seq1  TGTGACTTCCTTCTGCACTTCCCCCATCACATTGGCAATGCTCATTTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTCCTTCTGCACTTCCCCCATCACATTGGCAATGCTCATTTGTC  735

seq1  AACTGAGCATTATGACTAGGTCTTTCTCTTTTCCTTGTTAGGTGGATAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCATTATGACTAGGTCTTTCTCTTTTCCTTGTTAGGTGGATAAT  785

seq1  TTAAAACAATATAGCCATGAGCCTTTTCTCTACATATTCCAAGGAAGACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATATAGCCATGAGCCTTTTCTCTACATATTCCAAGGAAGACT  835

seq1  TCTCTAGAACACTGATGTTGAACCTTGGAAGAAGTGACACGTTGTTTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAACACTGATGTTGAACCTTGGAAGAAGTGACACGTTGTTTCTC  885

seq1  TAGTGGAAAGTGAAGGCAGAAATATGGGCAGACTTTAGTGTTAAAGCAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAAAGTGAAGGCAGAAATATGGGCAGACTTTAGTGTTAAAGCAAT  935

seq1  GTCCTCAAGTGCTCAGAAGATCACTCATAGAGTTGACACAGACAGTGGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAGTGCTCAGAAGATCACTCATAGAGTTGACACAGACAGTGGCT  985

seq1  GTCGTTAGCAGTCTTTTATCACTGACAATTCATATCCACAGCTCCTTCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTAGCAGTCTTTTATCACTGACAATTCATATCCACAGCTCCTTCAG  1035

seq1  AGTGAGCACATTTTATCTCCCATTGTAGTATCAGTGGTAATTGATGCCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACATTTTATCTCCCATTGTAGTATCAGTGGTAATTGATGCCTG  1085

seq1  TATACAGGCTTTCTGATGTTGGAGTCCCACTGGAGGCAGATTTTCTTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGCTTTCTGATGTTGGAGTCCCACTGGAGGCAGATTTTCTTTTC  1135

seq1  CCTTCTCCAGAAAGCATCCTGCTGTAATACAGGCCTTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCAGAAAGCATCCTGCTGTAATACAGGCCTTGAATTC  1178


seq1: chr19_49195767_49195895
seq2: B6Ng01-313H08.g_71_199

seq1  AAAGTCAGAAGCTCAACTCTGGCAGAGCAGTGATGTATTAATACAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGAAGCTCAACTCTGGCAGAGCAGTGATGTATTAATACAATGCA  50

seq1  TTGATACACACATAGAGAGAGGGGAAAGGGAAGGAGGAAGGGAGAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACACACATAGAGAGAGGGGAAAGGGAAGGAGGAAGGGAGAGGGAG  100

seq1  AAAGGTAGAGAGGGAGAGAGGGAGAGAAG  129
      ||||||||||||||||  |  ||||||||
seq2  AAAGGTAGAGAGGGAGTTATTGAGAGAAG  129


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