BAC Information

Click to search

BAC

Clone NameB6Ng01-314B15
Chromosome19 (Build37)
Map Location 40,537,096 - 40,670,913
singlet/doubletdoublet
Overlap geneSorbs1, Aldh18a1, LOC100043135
Upstream geneCyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream gene4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314B15.bB6Ng01-314B15.g
ACCGA105135GA105136
length1,1171,095
definitionB6Ng01-314B15.b B6Ng01-314B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,537,096 - 40,538,195)(40,669,827 - 40,670,913)
sequence
gaattctccttagcagagaagtccatgaacatccccagaggtatgtcccg
aggagtagtgagctagtgagctgcaacctaggcatgctaggcatcactat
tcgaaccagcttgaactaagctttaaaaatgtgttctttgtacagattgc
tgctggagagggacctcaaagcagccactaatcaatcagccatagcactt
tggcttccaagagtttcctagcttggctatactcatcaccatactaaatg
ggagaaaacagtatttagaaagaggaaagtctccgactcgacagcaggga
tctaccctcatgtttgagaagttagcagttctcatagcatgacctgtgag
cctaacaccattcagaactctggagacggtcttctcacgaaaggcccatc
gttacacgccctgaggtggtgggggtggcagttagaggaggaaggagaga
ctgtaaactgacccagcctctgctgtcaaggaagaagcagagagcatata
accatataagggaaaagtggctccctgttgcatctgcttgcaaagagtta
aggaatgagatacagcgcatggtctgagaagggtgatgatctgtgttctg
gccctgctgtggatgggctgtggggccttgggcaagctcctgcacccctc
tgactgtttctagttctccaaaaagcaagggcatactacaggtatctgag
ttcttattcaagagtgatgttccacaatactataatatttagaacacttg
ctgtgggaattacagacaggcagggaggaaggaagataggaaaaggaata
tgaaatatgacaaaatctgttattactgaatggcgatagcattaagaaaa
tatccactgtggcttcaaaccaaaggccaagcacagtcagtgctcacaaa
ccaatcttcataggctcttatggaactatgggcatgctatactttttact
tggtggggccactctgcagacatactacaggggcagtggcgtccactcgt
gttagtgagaatgtcctcatcataaattaacacccaggagccccaccgcc
tcccttgatcacaggaaggagcaggacagaggggccagtcccacaggtat
gaggactcccggatcaa
gaattctctcctttagtccaagtttatgcccgtgacttctatatgaagtc
tgtttctttaaggataaggctttggtagctcacgcagagtcctaactgcc
tggcccgtccgcagaagtagcatgcatagagacagacttcttgagctcat
ttcctcttcttggatggagacaaactagttgagaattatagtagaacact
taattaaaaggtcatgctgtccttttaattaaggcaaggttttgatggaa
gaaatgacattgtctaattattttaaacattaagccttgggatgagacag
taaatataaagagttaagatgccaacgaatgactcgtgaagccgtgtgaa
acgtgcagttctaaggcaccaccccctctgagccagtcagtcagtgtggc
ccacattcttggcgggtgagcttcattggcacagacataaaaatctgctg
gcctaggaaagtgaatgggagggggaaggacctgagaacctaggacaacc
tgaggggaagcgcaggcatttctgtggactaaagtgatcacaggaaaatt
acggaatggaccaagcagcgatggaaatttgctttgtgggaatttgaaag
ccaggcagagagggttggaggttactaatactctgaaacccaaattggtt
ttttgtttgtttgttttgttttgtttttttgagacagttttctttggata
gccctggctgtcctggaagctgatctgtagaccaggctaaccttgaactc
atggagatctgcttgcctctacctcccgagtactgggattaaaagcatgt
gctgccatactaagctcccaaattgtcttttaatgaaagagtcacagtcc
tgccccaggagcagaaggaaatgctgacgatatattccatcttcaactgc
ttatcattttgttccattccagagtccctagcaagtagccagtttctctg
aaaagggcaaagttcttgcatcagctactaccaagccagaagcgctctgc
acaggcagtcagagcgtgggaagttggcagccaccaagttctcagcagag
tctattaacacagaattgttttattcttagctgagcagtccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40537096_40538195
seq2: B6Ng01-314B15.b_45_1161

seq1  GAATTCTCCTTAGCAGAGAAGTCCATGAACATCCCCAGAGGTATGTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAGCAGAGAAGTCCATGAACATCCCCAGAGGTATGTCCCG  50

seq1  AGGAGTAGTGAGCTAGTGAGCTGCAACCTAGGCATGCTAGGCATCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGTGAGCTAGTGAGCTGCAACCTAGGCATGCTAGGCATCACTAT  100

seq1  TCGAACCAGCTTGAACTAAGCTTTAAAAATGTGTTCTTTGTACAGATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACCAGCTTGAACTAAGCTTTAAAAATGTGTTCTTTGTACAGATTGC  150

seq1  TGCTGGAGAGGGACCTCAAAGCAGCCACTAATCAATCAGCCATAGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAGGGACCTCAAAGCAGCCACTAATCAATCAGCCATAGCACTT  200

seq1  TGGCTTCCAAGAGTTTCCTAGCTTGGCTATACTCATCACCATACTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCAAGAGTTTCCTAGCTTGGCTATACTCATCACCATACTAAATG  250

seq1  GGAGAAAACAGTATTTAGAAAGAGGAAAGTCTCCGACTCGACAGCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACAGTATTTAGAAAGAGGAAAGTCTCCGACTCGACAGCAGGGA  300

seq1  TCTACCCTCATGTTTGAGAAGTTAGCAGTTCTCATAGCATGACCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCATGTTTGAGAAGTTAGCAGTTCTCATAGCATGACCTGTGAG  350

seq1  CCTAACACCATTCAGAACTCTGGAGACGGTCTTCTCACGAAAGGCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACCATTCAGAACTCTGGAGACGGTCTTCTCACGAAAGGCCCATC  400

seq1  GTTACACGCCCTGAGGTGGTGGGGGTGGCAGTTAGAGGAGGAAGGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACGCCCTGAGGTGGTGGGGGTGGCAGTTAGAGGAGGAAGGAGAGA  450

seq1  CTGTAAACTGACCCAGCCTCTGCTGTCAAGGAAGAAGCAGAGAGCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACTGACCCAGCCTCTGCTGTCAAGGAAGAAGCAGAGAGCATATA  500

seq1  ACCATATAAGGGAAAAGTGGCTCCCTGTTGCATCTGCTTGCAAAGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAAGGGAAAAGTGGCTCCCTGTTGCATCTGCTTGCAAAGAGTTA  550

seq1  AGGAATGAGATACAGCGCATGGTCTGAGAAGGGTGATGATCTGTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGATACAGCGCATGGTCTGAGAAGGGTGATGATCTGTGTTCTG  600

seq1  GCCCTGCTGTGGATGGGCTGTGGGGCCTTGGGCAAGCTCCTGCACCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGTGGATGGGCTGTGGGGCCTTGGGCAAGCTCCTGCACCCCTC  650

seq1  TGACTGTTTCTAGTTCTCCAAAAAGCAAGGGCATACTACAGGTATCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTCTAGTTCTCCAAAAAGCAAGGGCATACTACAGGTATCTGAG  700

seq1  TTCTTATTCAAGAGTGATGTTCCACAATACTATAATATTTAGAACACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCAAGAGTGATGTTCCACAATACTATAATATTTAGAACACTTG  750

seq1  CTGTGGGAATTACAGACAGGCAGGGAGGAAGGAAGATAGGAAAAGGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAATTACAGACAGGCAGGGAGGAAGGAAGATAGGAAAAGGAATA  800

seq1  TGAAATATGACAAAATCTGTTATTACTGAATGGCGATAGCATTAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGACAAAATCTGTTATTACTGAATGGCGATAGCATTAAGAAAA  850

seq1  TATCCACTGTGGCTTCAAACCAAAGGCCAAGCACAGTCAGTGCTCACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTGTGGCTTCAAACCAAAGGCCAAGCACAGTCAGTGCTCACAAA  900

seq1  CCAATCTTCATAGGCTCTTATGGAACTATGGGCATGCTATACTTTTTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTCATAGGCTCTTATGGAACTATGGGCATGCTATACTTTTTACT  950

seq1  TG--TGGGCCACTCTGCAGACATACTACA-GGGCAGTGGCGTCCACTCGT  997
      ||   |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTGGGGCCACTCTGCAGACATACTACAGGGGCAGTGGCGTCCACTCGT  1000

seq1  GTTAGTGAGAATGTCCTCATCATAAA-TAACACC--AGAG-CCCAC--GC  1041
      |||||||||||||||||||||||||| |||||||   ||| |||||   |
seq2  GTTAGTGAGAATGTCCTCATCATAAATTAACACCCAGGAGCCCCACCGCC  1050

seq1  TCCC-TGATCCACAG--AAGAGCAGGACAGAGGG--CAGT-CCACA-GTA  1084
      |||| |||| |||||  | |||||||||||||||  |||| ||||| |||
seq2  TCCCTTGAT-CACAGGAAGGAGCAGGACAGAGGGGCCAGTCCCACAGGTA  1099

seq1  TGA-GACTCCC-GATCAA  1100
      ||| ||||||| ||||||
seq2  TGAGGACTCCCGGATCAA  1117

seq1: chr19_40669827_40670913
seq2: B6Ng01-314B15.g_66_1160 (reverse)

seq1  CCAAGG-CTGCTCAGCT----AGATAACA--TCTGTG-TAATAGACTCTG  42
      |||||| ||||||||||    | | ||||  |||||| ||||||||||||
seq2  CCAAGGACTGCTCAGCTAAGAATAAAACAATTCTGTGTTAATAGACTCTG  50

seq1  CTGAGAACT--GT-GCTGCCAACTTCCCACGCTCCTGACTGCCTTGTGCA  89
      |||||||||  || ||||||||||||||||||| ||||||||| ||||||
seq2  CTGAGAACTTGGTGGCTGCCAACTTCCCACGCT-CTGACTGCC-TGTGCA  98

seq1  GGAGCGCTTCTGGCTTGGTAGTAGCTGATGCAAGAACTTTGCCCTTTTCA  139
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAGCGCTTCTGGCTTGGTAGTAGCTGATGCAAGAACTTTGCCCTTTTCA  147

seq1  GAGAAACTGGCTACTTGCTAGGGACTCTGGAATGGAACAAAATGATAAGC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGGCTACTTGCTAGGGACTCTGGAATGGAACAAAATGATAAGC  197

seq1  AGTTGAAGATGGAATATATCGTCAGCATTTCCTTCTGCTCCTGGGGCAGG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGATGGAATATATCGTCAGCATTTCCTTCTGCTCCTGGGGCAGG  247

seq1  ACTGTGACTCTTTCATTAAAAGACAATTTGGGAGCTTAGTATGGCAGCAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTCTTTCATTAAAAGACAATTTGGGAGCTTAGTATGGCAGCAC  297

seq1  ATGCTTTTAATCCCAGTACTCGGGAGGTAGAGGCAAGCAGATCTCCATGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAATCCCAGTACTCGGGAGGTAGAGGCAAGCAGATCTCCATGA  347

seq1  GTTCAAGGTTAGCCTGGTCTACAGATCAGCTTCCAGGACAGCCAGGGCTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGTTAGCCTGGTCTACAGATCAGCTTCCAGGACAGCCAGGGCTA  397

seq1  TCCAAAGAAAACTGTCTCAAAAAAACAAAACAAAACAAACAAACAAAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAAACTGTCTCAAAAAAACAAAACAAAACAAACAAACAAAAAA  447

seq1  CCAATTTGGGTTTCAGAGTATTAGTAACCTCCAACCCTCTCTGCCTGGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGGGTTTCAGAGTATTAGTAACCTCCAACCCTCTCTGCCTGGCT  497

seq1  TTCAAATTCCCACAAAGCAAATTTCCATCGCTGCTTGGTCCATTCCGTAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCCCACAAAGCAAATTTCCATCGCTGCTTGGTCCATTCCGTAA  547

seq1  TTTTCCTGTGATCACTTTAGTCCACAGAAATGCCTGCGCTTCCCCTCAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTGATCACTTTAGTCCACAGAAATGCCTGCGCTTCCCCTCAGG  597

seq1  TTGTCCTAGGTTCTCAGGTCCTTCCCCCTCCCATTCACTTTCCTAGGCCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAGGTTCTCAGGTCCTTCCCCCTCCCATTCACTTTCCTAGGCCA  647

seq1  GCAGATTTTTATGTCTGTGCCAATGAAGCTCACCCGCCAAGAATGTGGGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTTTATGTCTGTGCCAATGAAGCTCACCCGCCAAGAATGTGGGC  697

seq1  CACACTGACTGACTGGCTCAGAGGGGGTGGTGCCTTAGAACTGCACGTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACTGACTGGCTCAGAGGGGGTGGTGCCTTAGAACTGCACGTTT  747

seq1  CACACGGCTTCACGAGTCATTCGTTGGCATCTTAACTCTTTATATTTACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCTTCACGAGTCATTCGTTGGCATCTTAACTCTTTATATTTACT  797

seq1  GTCTCATCCCAAGGCTTAATGTTTAAAATAATTAGACAATGTCATTTCTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCCCAAGGCTTAATGTTTAAAATAATTAGACAATGTCATTTCTT  847

seq1  CCATCAAAACCTTGCCTTAATTAAAAGGACAGCATGACCTTTTAATTAAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAACCTTGCCTTAATTAAAAGGACAGCATGACCTTTTAATTAAG  897

seq1  TGTTCTACTATAATTCTCAACTAGTTTGTCTCCATCCAAGAAGAGGAAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACTATAATTCTCAACTAGTTTGTCTCCATCCAAGAAGAGGAAAT  947

seq1  GAGCTCAAGAAGTCTGTCTCTATGCATGCTACTTCTGCGGACGGGCCAGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAGAAGTCTGTCTCTATGCATGCTACTTCTGCGGACGGGCCAGG  997

seq1  CAGTTAGGACTCTGCGTGAGCTACCAAAGCCTTATCCTTAAAGAAACAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGACTCTGCGTGAGCTACCAAAGCCTTATCCTTAAAGAAACAGA  1047

seq1  CTTCATATAGAAGTCACGGGCATAAACTTGGACTAAAGGAGAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATAGAAGTCACGGGCATAAACTTGGACTAAAGGAGAGAATTC  1095