BAC Information

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BAC

Clone NameB6Ng01-314K12
Chromosome19 (Build37)
Map Location 43,929,933 - 44,014,967
singlet/doubletdoublet
Overlap geneDnmbp, LOC668408
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2
Downstream geneCpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314K12.bB6Ng01-314K12.g
ACCGA105523GA105524
length5331,105
definitionB6Ng01-314K12.b B6Ng01-314K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,014,435 - 44,014,967)(43,929,933 - 43,931,052)
sequence
cgcagcggagaatttgagttctctaggttggcggtagcgcgagtgcgtgg
ggatctggatcctagcctgagcgaggtgtgtcgctaaacgcccccacgca
gtccgtgcctcagtttccctgaaaggccctgggagcccgagccctgacgt
ggcggagcgacgggctaggcggccgccagggggcgcgagcgcgggaaacg
gagccgggggccaccggacggaagcggcgctaagggaggcggggcggcgc
ggagtcacccggatcggcccgcccgcccgccgccgctgaggggaggtgac
cgcggcccggccgggccaccagtggctgtgcgcggagggaacgccgagcg
gcagagagcaggtcggtgcggggccgggcgtccgtggggtggcggggtgg
tggggtagcggggacggtcgcctgcggggcgcgcggggcttgcggcgcag
ctctcggtcgcgctgagctgcgctccgcgagacgcgaggccctcgctgtc
ttcactcacggccgagggggtgcaggggggggg
gaattccctggcaatcctcacaatcgggcctttgcccactttgttctctt
tttagcttcttcgttgctgaatagcgaagtacacgtcagtccgatgtgtg
aggagtctgtgtggctcgtctccttgtctaggagctcggtgcgagtgctg
acatctgggactgcacccccttcctcatttgctaggccagtggttctcaa
cctgtggctagtgatccatttgggggtcaaacgacccttgcacaggggtt
gcatatcagatatttacattatgactcgtaacagtagcaaaattacagtt
atgaaggagtaatgaaataatgttatggttagagtaaccacagcatgaag
agctgtgttaaaaggtcgaagccttaggaaggctgggaactgctgatcag
tgattactgcatgctaaagcccacttgtacctttcacagggcatttttct
cttattcctcctagaagacagacatggacattgactatatgccactacac
acataaaaacataaataggtaatccatatcgtatgtatttcctgatgtgt
gcaggagcatggagcatgtgcgttcggatgctggaagacaccactggtgt
cgcgcttcaggagctcttgctgtcctgaaatacactaataagctcggatg
gctggccaagcaagctacctgtccctacctccccggtaatgaggacaaga
gagtgccaccacacctggtattgtctaacaagagtactgggcacggatct
tcttaggtcctcaagccctttgtcagctgtagtgacatattatgaaaggg
atttcctgttgaagctggagaaagtttccccctgtgggcactcctgcaaa
ggggctctaacaagccataagccacacaattgtgtagccctaccgccctt
tggagtttctatgcaatgtgggcctttagcactttctcaaacctgatgcc
tctgcctctgcggaagggacttctgtgagagctgccctatgagagtcctg
ggagggagcagcctgatgcgggtgaaggggcgcagacatgtcactacaaa
cgtgtgaagagcctgtcactgatgtagtatgcacttctcgaactgcctca
ggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44014435_44014967
seq2: B6Ng01-314K12.b_52_584 (reverse)

seq1  CCCCCCCCCTGCACCCCCTCGGCCGTGAGTGAAGACAGCGAGGGCCTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTGCACCCCCTCGGCCGTGAGTGAAGACAGCGAGGGCCTCGC  50

seq1  GTCTCGCGGAGCGCAGCTCAGCGCGACCGAGAGCTGCGCCGCAAGCCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGCGGAGCGCAGCTCAGCGCGACCGAGAGCTGCGCCGCAAGCCCCG  100

seq1  CGCGCCCCGCAGGCGACCGTCCCCGCTACCCCACCACCCCGCCACCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCCCGCAGGCGACCGTCCCCGCTACCCCACCACCCCGCCACCCCAC  150

seq1  GGACGCCCGGCCCCGCACCGACCTGCTCTCTGCCGCTCGGCGTTCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCCCGGCCCCGCACCGACCTGCTCTCTGCCGCTCGGCGTTCCCTCC  200

seq1  GCGCACAGCCACTGGTGGCCCGGCCGGGCCGCGGTCACCTCCCCTCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGCCACTGGTGGCCCGGCCGGGCCGCGGTCACCTCCCCTCAGCG  250

seq1  GCGGCGGGCGGGCGGGCCGATCCGGGTGACTCCGCGCCGCCCCGCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGGCGGGCGGGCCGATCCGGGTGACTCCGCGCCGCCCCGCCTCCC  300

seq1  TTAGCGCCGCTTCCGTCCGGTGGCCCCCGGCTCCGTTTCCCGCGCTCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGCCGCTTCCGTCCGGTGGCCCCCGGCTCCGTTTCCCGCGCTCGCG  350

seq1  CCCCCTGGCGGCCGCCTAGCCCGTCGCTCCGCCACGTCAGGGCTCGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGCGGCCGCCTAGCCCGTCGCTCCGCCACGTCAGGGCTCGGGCT  400

seq1  CCCAGGGCCTTTCAGGGAAACTGAGGCACGGACTGCGTGGGGGCGTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCTTTCAGGGAAACTGAGGCACGGACTGCGTGGGGGCGTTTAG  450

seq1  CGACACACCTCGCTCAGGCTAGGATCCAGATCCCCACGCACTCGCGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACACCTCGCTCAGGCTAGGATCCAGATCCCCACGCACTCGCGCTAC  500

seq1  CGCCAACCTAGAGAACTCAAATTCTCCGCTGCG  533
      |||||||||||||||||||||||||||||||||
seq2  CGCCAACCTAGAGAACTCAAATTCTCCGCTGCG  533

seq1: chr19_43929933_43931052
seq2: B6Ng01-314K12.g_65_1169

seq1  GAATTCCCTGGCAATCCTCACAATCGGGCCTTTGCCCACTTTGTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGCAATCCTCACAATCGGGCCTTTGCCCACTTTGTTCTCTT  50

seq1  TTTAGCTTCTTCGTTGCTGAATAGCGAAGTACACGTCAGTCCGATGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTCTTCGTTGCTGAATAGCGAAGTACACGTCAGTCCGATGTGTG  100

seq1  AGGAGTCTGTGTGGCTCGTCTCCTTGTCTAGGAGCTCGGTGCGAGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGTGTGGCTCGTCTCCTTGTCTAGGAGCTCGGTGCGAGTGCTG  150

seq1  ACATCTGGGACTGCACCCCCTTCCTCATTTGCTAGGCCAGTGGTTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGACTGCACCCCCTTCCTCATTTGCTAGGCCAGTGGTTCTCAA  200

seq1  CCTGTGGCTAGTGATCCATTTGGGGGTCAAACGACCCTTGCACAGGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCTAGTGATCCATTTGGGGGTCAAACGACCCTTGCACAGGGGTT  250

seq1  GCATATCAGATATTTACATTATGACTCGTAACAGTAGCAAAATTACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGATATTTACATTATGACTCGTAACAGTAGCAAAATTACAGTT  300

seq1  ATGAAGGAGTAATGAAATAATGTTATGGTTAGAGTAACCACAGCATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGTAATGAAATAATGTTATGGTTAGAGTAACCACAGCATGAAG  350

seq1  AGCTGTGTTAAAAGGTCGAAGCCTTAGGAAGGCTGGGAACTGCTGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTAAAAGGTCGAAGCCTTAGGAAGGCTGGGAACTGCTGATCAG  400

seq1  TGATTACTGCATGCTAAAGCCCACTTGTACCTTTCACAGGGCATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGCATGCTAAAGCCCACTTGTACCTTTCACAGGGCATTTTTCT  450

seq1  CTTATTCCTCCTAGAAGACAGACATGGACATTGACTATATGCCACTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCTCCTAGAAGACAGACATGGACATTGACTATATGCCACTACAC  500

seq1  ACATAAAAACATAAATAGGTAATCCATATCGTATGTATTTCCTGATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAACATAAATAGGTAATCCATATCGTATGTATTTCCTGATGTGT  550

seq1  GCAGGAGCATGGAGCATGTGCGTTCGGATGCTGGAAGACACCACTGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCATGGAGCATGTGCGTTCGGATGCTGGAAGACACCACTGGTGT  600

seq1  CGCGCTTCAGGAGCTCTTGCTGTCCTGAAATACACTAATAAGCTCGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTTCAGGAGCTCTTGCTGTCCTGAAATACACTAATAAGCTCGGATG  650

seq1  GCTGGCCAAGCAAGCTACCTGTCCCTACCTCCCCGGTAATGAGGACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAAGCAAGCTACCTGTCCCTACCTCCCCGGTAATGAGGACAAGA  700

seq1  GAGTGCCACCACACCTGGTATTGTCTAACAAGAGTACTGGGCACGGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCACCACACCTGGTATTGTCTAACAAGAGTACTGGGCACGGATCT  750

seq1  TCTTAGGTCCTCAAGCCCTTTGTCAGCTGTAGTGACATATTATGAAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTCCTCAAGCCCTTTGTCAGCTGTAGTGACATATTATGAAAGGG  800

seq1  ATTTCCTGTTGAAGCTGGAGAAAGTTTCCCCCTGTGGGCACTCCTGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTTGAAGCTGGAGAAAGTTTCCCCCTGTGGGCACTCCTGCAAA  850

seq1  GGGGCTCTAACAAGCCATAAGCCACACAATTGTGTAGCCCTACCGCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTAACAAGCCATAAGCCACACAATTGTGTAGCCCTACCGCCCTT  900

seq1  TGGAGTTTCTATGCAATGT-GGCCTTTAGCACTTTCTCAAAACCTGATGC  949
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TGGAGTTTCTATGCAATGTGGGCCTTTAGCACTTTCTC-AAACCTGATGC  949

seq1  CTCTGCCTCTGCGGAAGGGACTTCTGTGAGAGCTGCCCTATGAGAGGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  CTCTGCCTCTGCGGAAGGGACTTCTGTGAGAGCTGCCCTATGAGAG--TC  997

seq1  CTGGGAAGGGAGCCAAGCCTTGAAGGGGGGGTGGAGGGGGCGGCAGACAA  1049
      ||||| |||||||  |||| |||   | ||||| |||||   |||||| |
seq2  CTGGG-AGGGAGC--AGCC-TGA--TGCGGGTGAAGGGG--CGCAGAC-A  1038

seq1  TGTCACTTACAAACCGTGTGAAGAGCTGGTCACTGATGTAGCGATGCACC  1099
      |||||| |||||| ||||||||||||  |||||||||||||  ||||| |
seq2  TGTCAC-TACAAA-CGTGTGAAGAGCCTGTCACTGATGTAG-TATGCA-C  1084

seq1  TTCTCGAACTGCTCCAGGTCA  1120
      ||||||||||||  |||||||
seq2  TTCTCGAACTGCCTCAGGTCA  1105