BAC Information

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BAC

Clone NameB6Ng01-314P21
Chromosome19 (Build37)
Map Location 37,182,915 - 37,285,509
singlet/doubletdoublet
Overlap geneCpeb3, March5
Upstream geneAnkrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneLOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314P21.bB6Ng01-314P21.g
ACCGA105761GA105762
length1,1691,079
definitionB6Ng01-314P21.b B6Ng01-314P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,182,915 - 37,184,083)(37,284,427 - 37,285,509)
sequence
gaattcacaacacccacataaaaagctgaatatgaccacatatgcctata
atcaaagcacaagggaagtcaactagcctagccaaattagtgcccttata
tataagttcagcaagagactctgtcacaaaaaataaagagtctgagagag
aaacagacctgatgccgacctctgcctgccatgcagatacatataccttc
atgagcacttgcacatgcacacatgcaagactggataccatgttggctct
gagcaaacacagtctcttctagcagagtatacagtcagggggagaacagt
gcacggacaacatgctttgatcgtctgtagaacataggccaatctaacag
caatttaaaacttgataaacttgtttacatgaggactatttgtgaacagc
ttagttagagtcaaattcttccattagagaaaggtaatgaattctgaaga
acgtggaaataggaaatagtgctttcctttagaaatatatacaacgttaa
ggaagaatgctgaatataaaacttcaagtgagagacaggagaaatgatgt
gattatattatagtctttaaaaaaaatcagaaaaacaaaaacttcatatc
agccagcacaaaatgaacatcaacaacaagagatagggagatcctgtctg
tagatacgtctcatatagcctccttcttccacttactattagaaccaatg
acgattgtaccacaaaaaagccagctgtggttcagcctcactgaacctca
ctgtgtttgtttaaccacagcctcagaaggcagggtggacagatcactct
atgttcaaggccagcctatctatgcagtgagtttcagacagtgaggaggg
tggctgtaatcacatgttcaggctgtcatggtttagacaccagactgcgg
ggcagtgagggctgcctctgcctctcaagtgctgggattacagtgtgtac
agccatgcccaatttaatccttcttcatgccatcagtgaacacatttaat
acgttgagatgcaacttttttcttctatttactcagagctatttttttta
agcagtgctgatgctagaataggcacgagacttggtgttatgcccagcca
aacactgaactacagcgtcgttcattgatttttactaaggttttgttgtg
aagtgcaaatatttgtgtg
gaattccagggatacagagtgagaccttatctcaggtcttcacctcttcc
ttcccccaccccaaaaaaagcttttaactacggggacacacacacacaga
aataaaacagtgaacatgtctgtgttgttcttccattagtccttacccag
ctttggaaacactattaagtactcggcgttgcactgaggacaggccactc
tggctgtgctgtttcctctttgcttttcatctacccagcgctggagacaa
gcctggtgaacccacttagtagatcctctgcacctgcatggtctcaccca
ctcagctgttctatcatcttcatcggtggcaaagcacacccagcaacttc
tgtaaattaagaaaaaaaagttttatctttagggttccagtctccttcct
gcatgaagctcttagctaatgggatggaactatcatgcagtattgaagaa
gtcctgtaaaaattacagagccaaacaaccaatctatttccagtagagct
tttcttctggtttgttttttatcttccactacagaacctattttttgaac
tttgtttttatctatcttttttttggactccatctttctagtaatttccc
ctgactagtaaactagcatacaggcacagtttcaagtatcttctgcttat
taagacctcttgaacttagaaaaacaaagtgctagtgttttcatatatag
ttcccctacccttcaggccaggattacaaacattctaggcagaatgttct
gagccatattctcagaccattcaattttcaactgaggaaaccaattttta
aaaagccgactccgttttcttaatggtaaaggatagctataggaagaaaa
aggacatcacaacaatttctttccaagttcaagaggtcctttttttttta
aagatttatttatttatttaatgtatgtgcttacactatagctatacaga
tgggtgtgagccttcatgtggttgttgggaattgatttttaggatctctg
cttgctctggtcggcccactgcttcggaccaagatttagtatatacatta
gtacacagttagctgacttcagacccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37182915_37184083
seq2: B6Ng01-314P21.b_49_1217

seq1  GAATTCACAACACCCACATAAAAAGCTGAATATGACCACATATGCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACACCCACATAAAAAGCTGAATATGACCACATATGCCTATA  50

seq1  ATCAAAGCACAAGGGAAGTCAACTAGCCTAGCCAAATTAGTGCCCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCACAAGGGAAGTCAACTAGCCTAGCCAAATTAGTGCCCTTATA  100

seq1  TATAAGTTCAGCAAGAGACTCTGTCACAAAAAATAAAGAGTCTGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTCAGCAAGAGACTCTGTCACAAAAAATAAAGAGTCTGAGAGAG  150

seq1  AAACAGACCTGATGCCGACCTCTGCCTGCCATGCAGATACATATACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCTGATGCCGACCTCTGCCTGCCATGCAGATACATATACCTTC  200

seq1  ATGAGCACTTGCACATGCACACATGCAAGACTGGATACCATGTTGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTTGCACATGCACACATGCAAGACTGGATACCATGTTGGCTCT  250

seq1  GAGCAAACACAGTCTCTTCTAGCAGAGTATACAGTCAGGGGGAGAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACACAGTCTCTTCTAGCAGAGTATACAGTCAGGGGGAGAACAGT  300

seq1  GCACGGACAACATGCTTTGATCGTCTGTAGAACATAGGCCAATCTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGACAACATGCTTTGATCGTCTGTAGAACATAGGCCAATCTAACAG  350

seq1  CAATTTAAAACTTGATAAACTTGTTTACATGAGGACTATTTGTGAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAACTTGATAAACTTGTTTACATGAGGACTATTTGTGAACAGC  400

seq1  TTAGTTAGAGTCAAATTCTTCCATTAGAGAAAGGTAATGAATTCTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGAGTCAAATTCTTCCATTAGAGAAAGGTAATGAATTCTGAAGA  450

seq1  ACGTGGAAATAGGAAATAGTGCTTTCCTTTAGAAATATATACAACGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAATAGGAAATAGTGCTTTCCTTTAGAAATATATACAACGTTAA  500

seq1  GGAAGAATGCTGAATATAAAACTTCAAGTGAGAGACAGGAGAAATGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGCTGAATATAAAACTTCAAGTGAGAGACAGGAGAAATGATGT  550

seq1  GATTATATTATAGTCTTTAAAAAAAATCAGAAAAACAAAAACTTCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATTATAGTCTTTAAAAAAAATCAGAAAAACAAAAACTTCATATC  600

seq1  AGCCAGCACAAAATGAACATCAACAACAAGAGATAGGGAGATCCTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCACAAAATGAACATCAACAACAAGAGATAGGGAGATCCTGTCTG  650

seq1  TAGATACGTCTCATATAGCCTCCTTCTTCCACTTACTATTAGAACCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACGTCTCATATAGCCTCCTTCTTCCACTTACTATTAGAACCAATG  700

seq1  ACGATTGTACCACAAAAAAGCCAGCTGTGGTTCAGCCTCACTGAACCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGTACCACAAAAAAGCCAGCTGTGGTTCAGCCTCACTGAACCTCA  750

seq1  CTGTGTTTGTTTAACCACAGCCTCAGAAGGCAGGGTGGACAGATCACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGTTTAACCACAGCCTCAGAAGGCAGGGTGGACAGATCACTCT  800

seq1  ATGTTCAAGGCCAGCCTATCTATGCAGTGAGTTTCAGGACAGTGAGGAGG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTTCAAGGCCAGCCTATCTATGCAGTGAGTTTCA-GACAGTGAGGAGG  849

seq1  GTGGCTGTAATCACATGTTCAGGCTGTCATGGTTTAGACACCAGACTGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTAATCACATGTTCAGGCTGTCATGGTTTAGACACCAGACTGCG  899

seq1  GGGCAGTGAGGGCTGCCTCTGCCTCTCAAGTGCTGGGATTACAGGTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGCAGTGAGGGCTGCCTCTGCCTCTCAAGTGCTGGGATTACA-GTGTGT  948

seq1  ACAGCCATGCCCAATTTAATCCTTCTTCATGCCATCAGTGAACACA-TTA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGCCATGCCCAATTTAATCCTTCTTCATGCCATCAGTGAACACATTTA  998

seq1  ATACGTTGAGATGCAAC-TTTTTCTTCTATTTACTCCAAGAACCTATTTT  1048
      ||||||||||||||||| ||||||||||||||||||  ||   |||||||
seq2  ATACGTTGAGATGCAACTTTTTTCTTCTATTTACTCAGAG---CTATTTT  1045

seq1  TTTAAAGCAGTGCTGAGTGCTAGAATAGCCACGAGACTTGGTG-TATGCC  1097
      ||| |||||||||||| ||||||||||| |||||||||||||| ||||||
seq2  TTTTAAGCAGTGCTGA-TGCTAGAATAGGCACGAGACTTGGTGTTATGCC  1094

seq1  AAG-CAAACACTGGACTACAGCGCCG-TCATTGATTTTTTTCCTTAAGGT  1145
       || ||||||||| ||||||||| || ||||||||||||     ||||||
seq2  CAGCCAAACACTGAACTACAGCGTCGTTCATTGATTTTT---ACTAAGGT  1141

seq1  TTTG-TGTG-AGTG--AATATTTGTGTG  1169
      |||| |||| ||||  ||||||||||||
seq2  TTTGTTGTGAAGTGCAAATATTTGTGTG  1169

seq1: chr19_37284427_37285509
seq2: B6Ng01-314P21.g_65_1143 (reverse)

seq1  GGTGTGTCTGAGGTCAGCT-ACTGTGTACTTATGTATAATACTAAATCTT  49
      |||| |||||| ||||||| |||||||||| |||||| |||||||||| |
seq2  GGTGGGTCTGAAGTCAGCTAACTGTGTACTAATGTAT-ATACTAAATC-T  48

seq1  TGGTCCGAAGCAAGTGGGGCCGACCAGAGCAAGCAGAGATCCTAAAAATT  99
      ||||||||||| ||| |||||||||||||||||||||||||||||||| |
seq2  TGGTCCGAAGC-AGT-GGGCCGACCAGAGCAAGCAGAGATCCTAAAAA-T  95

seq1  CAATTCCCAACAACCACATGAAGGCTCACAACCATCTGTATAGCTATAGT  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATTCCCAACAACCACATGAAGGCTCACACCCATCTGTATAGCTATAGT  145

seq1  GTAAGCACATACATTAAATAAATAAATAAATCTTTAAAAAAAAAAGGACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACATACATTAAATAAATAAATAAATCTTTAAAAAAAAAAGGACC  195

seq1  TCTTGAACTTGGAAAGAAATTGTTGTGATGTCCTTTTTCTTCCTATAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACTTGGAAAGAAATTGTTGTGATGTCCTTTTTCTTCCTATAGCT  245

seq1  ATCCTTTACCATTAAGAAAACGGAGTCGGCTTTTTAAAAATTGGTTTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTACCATTAAGAAAACGGAGTCGGCTTTTTAAAAATTGGTTTCCT  295

seq1  CAGTTGAAAATTGAATGGTCTGAGAATATGGCTCAGAACATTCTGCCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAAATTGAATGGTCTGAGAATATGGCTCAGAACATTCTGCCTAG  345

seq1  AATGTTTGTAATCCTGGCCTGAAGGGTAGGGGAACTATATATGAAAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTAATCCTGGCCTGAAGGGTAGGGGAACTATATATGAAAACAC  395

seq1  TAGCACTTTGTTTTTCTAAGTTCAAGAGGTCTTAATAAGCAGAAGATACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTTGTTTTTCTAAGTTCAAGAGGTCTTAATAAGCAGAAGATACT  445

seq1  TGAAACTGTGCCTGTATGCTAGTTTACTAGTCAGGGGAAATTACTAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGTGCCTGTATGCTAGTTTACTAGTCAGGGGAAATTACTAGAAA  495

seq1  GATGGAGTCCAAAAAAAAGATAGATAAAAACAAAGTTCAAAAAATAGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTCCAAAAAAAAGATAGATAAAAACAAAGTTCAAAAAATAGGTT  545

seq1  CTGTAGTGGAAGATAAAAAACAAACCAGAAGAAAAGCTCTACTGGAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGGAAGATAAAAAACAAACCAGAAGAAAAGCTCTACTGGAAATA  595

seq1  GATTGGTTGTTTGGCTCTGTAATTTTTACAGGACTTCTTCAATACTGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTGTTTGGCTCTGTAATTTTTACAGGACTTCTTCAATACTGCAT  645

seq1  GATAGTTCCATCCCATTAGCTAAGAGCTTCATGCAGGAAGGAGACTGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTCCATCCCATTAGCTAAGAGCTTCATGCAGGAAGGAGACTGGAA  695

seq1  CCCTAAAGATAAAACTTTTTTTTCTTAATTTACAGAAGTTGCTGGGTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGATAAAACTTTTTTTTCTTAATTTACAGAAGTTGCTGGGTGTG  745

seq1  CTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCA  795

seq1  GGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGG  845

seq1  GTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCA  895

seq1  GTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGGGTAAGGACTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGGGTAAGGACTAAT  945

seq1  GGAAGAACAACACAGACATGTTCACTGTTTTATTTCTGTGTGTGTGTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAACACAGACATGTTCACTGTTTTATTTCTGTGTGTGTGTGTC  995

seq1  CCCGTAGTTAAAAGCTTTTTTTGGGGTGGGGGAAGGAAGAGGTGAAGACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGTTAAAAGCTTTTTTTGGGGTGGGGGAAGGAAGAGGTGAAGACC  1045

seq1  TGAGATAAGGTCTCACTCTGTATCCCTGGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGGTCTCACTCTGTATCCCTGGAATTC  1079