BAC Information

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BAC

Clone NameB6Ng01-315E20
Chromosome19 (Build37)
Map Location 34,771,632 - 34,914,497
singlet/doubletdoublet
Overlap geneSlc16a12, LOC676714, Pank1
Upstream geneEG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1
Downstream geneMphosph1, LOC383464, LOC100042292, A830019P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E20.bB6Ng01-315E20.g
ACCGA105988GA105989
length1,1151,093
definitionB6Ng01-315E20.b B6Ng01-315E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,913,393 - 34,914,497)(34,771,632 - 34,772,724)
sequence
gaattccttcattattgagtagcattttaaagtgcagggcgcttagtgtc
aaatatggagaaataacattcagcccagcttctctcaattttgcaatccc
ttaacgtctgtcttctaatctctccatctcctcagttaagatagtgatct
ctctactgtctagcttcatctcctagggtaaagtgaacataaaactgaag
tacaggtgtaggtctatcttggaaagtataggcaattggataagtgcgtg
gacacgggtgaaggaaaggttggaagatttcaggattgtgcgctcttttc
acagttgaacacccgtgagatgtcttgtaggatgcgtttttcaaagcctg
tagcactgtgttttgtcccagacaaatgtcactgaatcttggtaggaaat
ccgtcactctttgcataatgagcgaacacattatccgtggtgtttaataa
agcagtaagatgcaaaccatgtcaccaaaaggaacaccattcacttcgct
gatttcagtgagtaattttatggagtgggtgtgctgctggtaataaaacc
aggcccaggcttgcggtgtgtgcactgtacaaacagaaccttcggtggat
gctcccagaggagctggtagcagtcctccagcaatattctgagtgagatt
gattagctcctggttttagccattttcttttgtgtcacccttcccctgca
caggtatagaatttgatacaaccgtttactaaattgacacatggggtccc
ttcccctacagaaagactcagcaaccaatcagtttagacacgtggaacag
ttaaggagtgtagatgtgagaagtagacttgagtccatagtgggggtgat
gggaatgaacccgaattctagtcctgtttctgcattaaccttgctcggcg
gcttttgctgagttttcttcttgtgggcctcaatttcatcatctgcagag
cagaagacagggaaggcatacaggaccaaagaactgggatggtggtcata
ccactattgctctggtggctcgcgggccttttagaatgtgtttgtataag
taactgcctgctgggtagaactgggccttggaactcattttactttcgaa
agagagctgactttg
gaattcaattaaatatacattcctgagggtttttttttaatgttgtagtt
ttgaccttttcttttctttttcttctttattctcttcttttccatatatc
gggtatattgccctttaaattatggtaataataccaggaataaatatttt
caaaaattgaaagaaaaaatgttaaaggtttacaacactaaaaagtttaa
ggcatcccatgttactgactgacacaaaaagcaggttaaggacggacata
gaaaaataattcggctcaggatgagattaggttgatcatatgtcctgtta
tgttctgattctcactattactatttattatttattatatgtggaaattc
cccaactgtggctttcattcaaagccaagctagataaaagttaatttgaa
ctgttatctggactactaaagaaacttggaagaaggctgaccatcctgca
acccatcctgtatcttcttcagagcaaatgttttctttccctatgaaaac
tcactctggacgatgtccaaggtcatagctttcagttcctgagtctgagc
tatgaccctgatcaatcagtcttggcgtatgctttcaataaaccagccct
gtttaactgagaaaaaaaagtatcattatgaaacattaatatgtgataat
aaataccattcactttttaaaaaatctgctcataaagaacactaacaaaa
tacaaaagtgtataaatctatggctggacagatatttcagccattggctt
cacaactttaatggttcagctcccagcaccaacatcaaagcctatctcat
cctctttccttcccttatttacactggcccaatggcacaccatcttaact
aaaagaaaatgacatctttagaaacacaagcacaactgtataaatctgaa
taaactttgcaacactcctcatcatgttgtagtgacatgataaatggagg
tctactgtcagtcaagttaacctgaatggccacatgcaagcactggcctc
atcaggactccaggaaaggctgagagcaatcaggtggcacaatagttcct
cacgggtttctccagaaagcacaattccttgggaaagaacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34913393_34914497
seq2: B6Ng01-315E20.b_49_1163 (reverse)

seq1  CAAAGTCAGCTCTC-TTCTGAAGTAAAATGGAGTCCAA-GCCCAGTTCTT  48
      |||||||||||||| |||  ||||||||||   ||||| ||||||||| |
seq2  CAAAGTCAGCTCTCTTTCGAAAGTAAAATGAGTTCCAAGGCCCAGTTC-T  49

seq1  ACCCAGCAGGCA-TTAC-TATACAAACACA-TCTAAAAGGCCCGCGAGCC  95
      |||||||||||| |||| |||||||||||| |||||||||||||||||||
seq2  ACCCAGCAGGCAGTTACTTATACAAACACATTCTAAAAGGCCCGCGAGCC  99

seq1  A-CAGAGCAATAGTGGTATGACCA-CAT-CCAGTTCTTTTGTCCTGTATG  142
      | |||||||||||||||||||||| ||| |||||||||| ||||||||||
seq2  ACCAGAGCAATAGTGGTATGACCACCATCCCAGTTCTTTGGTCCTGTATG  149

seq1  CCTTCCCTGTCTTCTGCTCTGCAGATGATGAAATTGAGGCCCACAGGA--  190
      ||||||||||||||||||||||||||||||||||||||||||||| ||  
seq2  CCTTCCCTGTCTTCTGCTCTGCAGATGATGAAATTGAGGCCCACAAGAAG  199

seq1  GAAACTCAGCAAAAGCCGCCGAGC-AGGTTAATGCAGAAACAGGACTAGA  239
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAACTCAGCAAAAGCCGCCGAGCAAGGTTAATGCAGAAACAGGACTAGA  249

seq1  ATTCGGGTTCATTCCCATCACCCCCACTATGGACTCAAGTCTACTTCTCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGTTCATTCCCATCACCCCCACTATGGACTCAAGTCTACTTCTCA  299

seq1  CATCTACACTCCTTAACTGTTCCACGTGTCTAAACTGATTGGTTGCTGAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACTCCTTAACTGTTCCACGTGTCTAAACTGATTGGTTGCTGAG  349

seq1  TCTTTCTGTAGGGGAAGGGACCCCATGTGTCAATTTAGTAAACGGTTGTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTAGGGGAAGGGACCCCATGTGTCAATTTAGTAAACGGTTGTA  399

seq1  TCAAATTCTATACCTGTGCAGGGGAAGGGTGACACAAAAGAAAATGGCTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTATACCTGTGCAGGGGAAGGGTGACACAAAAGAAAATGGCTA  449

seq1  AAACCAGGAGCTAATCAATCTCACTCAGAATATTGCTGGAGGACTGCTAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGGAGCTAATCAATCTCACTCAGAATATTGCTGGAGGACTGCTAC  499

seq1  CAGCTCCTCTGGGAGCATCCACCGAAGGTTCTGTTTGTACAGTGCACACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCTGGGAGCATCCACCGAAGGTTCTGTTTGTACAGTGCACACA  549

seq1  CCGCAAGCCTGGGCCTGGTTTTATTACCAGCAGCACACCCACTCCATAAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGCCTGGGCCTGGTTTTATTACCAGCAGCACACCCACTCCATAAA  599

seq1  ATTACTCACTGAAATCAGCGAAGTGAATGGTGTTCCTTTTGGTGACATGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCACTGAAATCAGCGAAGTGAATGGTGTTCCTTTTGGTGACATGG  649

seq1  TTTGCATCTTACTGCTTTATTAAACACCACGGATAATGTGTTCGCTCATT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTTACTGCTTTATTAAACACCACGGATAATGTGTTCGCTCATT  699

seq1  ATGCAAAGAGTGACGGATTTCCTACCAAGATTCAGTGACATTTGTCTGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGAGTGACGGATTTCCTACCAAGATTCAGTGACATTTGTCTGGG  749

seq1  ACAAAACACAGTGCTACAGGCTTTGAAAAACGCATCCTACAAGACATCTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACAGTGCTACAGGCTTTGAAAAACGCATCCTACAAGACATCTC  799

seq1  ACGGGTGTTCAACTGTGAAAAGAGCGCACAATCCTGAAATCTTCCAACCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGTTCAACTGTGAAAAGAGCGCACAATCCTGAAATCTTCCAACCT  849

seq1  TTCCTTCACCCGTGTCCACGCACTTATCCAATTGCCTATACTTTCCAAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACCCGTGTCCACGCACTTATCCAATTGCCTATACTTTCCAAGA  899

seq1  TAGACCTACACCTGTACTTCAGTTTTATGTTCACTTTACCCTAGGAGATG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTACACCTGTACTTCAGTTTTATGTTCACTTTACCCTAGGAGATG  949

seq1  AAGCTAGACAGTAGAGAGATCACTATCTTAACTGAGGAGATGGAGAGATT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACAGTAGAGAGATCACTATCTTAACTGAGGAGATGGAGAGATT  999

seq1  AGAAGACAGACGTTAAGGGATTGCAAAATTGAGAGAAGCTGGGCTGAATG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGACGTTAAGGGATTGCAAAATTGAGAGAAGCTGGGCTGAATG  1049

seq1  TTATTTCTCCATATTTGACACTAAGCGCCCTGCACTTTAAAATGCTACTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCCATATTTGACACTAAGCGCCCTGCACTTTAAAATGCTACTC  1099

seq1  AATAATGAAGGAATTC  1105
      ||||||||||||||||
seq2  AATAATGAAGGAATTC  1115

seq1: chr19_34771632_34772724
seq2: B6Ng01-315E20.g_67_1159

seq1  GAATTCAATTAAATATACATTCCTGAGGGTTTTTTTTTAATGTTGTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAATATACATTCCTGAGGGTTTTTTTTTAATGTTGTAGTT  50

seq1  TTGACCTTTTCTTTTCTTTTTCTTCTTTATTCTCTTCTTTTCCATATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTTTCTTTTCTTTTTCTTCTTTATTCTCTTCTTTTCCATATATC  100

seq1  GGGTATATTGCCCTTTAAATTATGGTAATAATACCAGGAATAAATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATATTGCCCTTTAAATTATGGTAATAATACCAGGAATAAATATTTT  150

seq1  CAAAAATTGAAAGAAAAAATGTTAAAGGTTTACAACACTAAAAAGTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTGAAAGAAAAAATGTTAAAGGTTTACAACACTAAAAAGTTTAA  200

seq1  GGCATCCCATGTTACTGACTGACACAAAAAGCAGGTTAAGGACGGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCCATGTTACTGACTGACACAAAAAGCAGGTTAAGGACGGACATA  250

seq1  GAAAAATAATTCGGCTCAGGATGAGATTAGGTTGATCATATGTCCTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATTCGGCTCAGGATGAGATTAGGTTGATCATATGTCCTGTTA  300

seq1  TGTTCTGATTCTCACTATTACTATTTATTATTTATTATATGTGGAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATTCTCACTATTACTATTTATTATTTATTATATGTGGAAATTC  350

seq1  CCCAACTGTGGCTTTCATTCAAAGCCAAGCTAGATAAAAGTTAATTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGTGGCTTTCATTCAAAGCCAAGCTAGATAAAAGTTAATTTGAA  400

seq1  CTGTTATCTGGACTACTAAAGAAACTTGGAAGAAGGCTGACCATCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCTGGACTACTAAAGAAACTTGGAAGAAGGCTGACCATCCTGCA  450

seq1  ACCCATCCTGTATCTTCTTCAGAGCAAATGTTTTCTTTCCCTATGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCTGTATCTTCTTCAGAGCAAATGTTTTCTTTCCCTATGAAAAC  500

seq1  TCACTCTGGACGATGTCCAAGGTCATAGCTTTCAGTTCCTGAGTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGACGATGTCCAAGGTCATAGCTTTCAGTTCCTGAGTCTGAGC  550

seq1  TATGACCCTGATCAATCAGTCTTGGCGTATGCTTTCAATAAACCAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCCTGATCAATCAGTCTTGGCGTATGCTTTCAATAAACCAGCCCT  600

seq1  GTTTAACTGAGAAAAAAAAGTATCATTATGAAACATTAATATGTGATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTGAGAAAAAAAAGTATCATTATGAAACATTAATATGTGATAAT  650

seq1  AAATACCATTCACTTTTTAAAAAATCTGCTCATAAAGAACACTAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATTCACTTTTTAAAAAATCTGCTCATAAAGAACACTAACAAAA  700

seq1  TACAAAAGTGTATAAATCTATGGCTGGACAGATATTTCAGCCATTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGTGTATAAATCTATGGCTGGACAGATATTTCAGCCATTGGCTT  750

seq1  CACAACTTTAATGGTTCAGCTCCCAGCACCAACATCAAAGCCTATCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTAATGGTTCAGCTCCCAGCACCAACATCAAAGCCTATCTCAT  800

seq1  CCTCTTTCCTTCCCTTATTTACACTGGCCCAATGGCACACCATCTTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCTTCCCTTATTTACACTGGCCCAATGGCACACCATCTTAACT  850

seq1  AAAAGAAAATGACATCTTTAGAAACACAAGCACAACTGTATAAATCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATGACATCTTTAGAAACACAAGCACAACTGTATAAATCTGAA  900

seq1  TAAACTTTGCAACACTCCTCATCATGTTGTAGTGACATGATAAATGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGCAACACTCCTCATCATGTTGTAGTGACATGATAAATGGAGG  950

seq1  TCTACTGTCAGTCAAAGTTAACCTGAATGGCCACAATGCAAGCACTGGCC  1000
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TCTACTGTCAGTC-AAGTTAACCTGAATGGCCAC-ATGCAAGCACTGGCC  998

seq1  TCATCAGGACTCCAAGGAAGGCTGAGAGCATTCA-GTGGCAACATAGTTC  1049
      |||||||||||||| | ||||||||||||| ||| ||||||  |||||||
seq2  TCATCAGGACTCCAGGAAAGGCTGAGAGCAATCAGGTGGCACAATAGTTC  1048

seq1  CTCAC-GGTTTCTCCAAGAAAGCACAA-TCCTTGGGAAAGAACACC  1093
      ||||| ||||||||| ||||||||||| ||||||||||||||||||
seq2  CTCACGGGTTTCTCC-AGAAAGCACAATTCCTTGGGAAAGAACACC  1093