BAC Information

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BAC

Clone NameB6Ng01-317H22
Chromosome19 (Build37)
Map Location 45,994,915 - 46,167,216
singlet/doubletdoublet
Overlap gene9130011E15Rik, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream geneElovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H22.bB6Ng01-317H22.g
ACCGA107625GA107626
length1,1721,075
definitionB6Ng01-317H22.b B6Ng01-317H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,166,021 - 46,167,216)(45,994,915 - 45,995,984)
sequence
gaattccaggtactgctggatttgaccttataaagggaaaggaagtttaa
cctggctaccaggctatgtgatctctgatggggcacaggtctatgtgtgc
tgggccatgcagtcctagggcagggaggggcaaacttaaacctgccaatc
tcaagatcagatttctgaggtttggtcatgcctggaccccactcttgctc
caggcctgctcctcctggttccacagatccagccccatcactgtgtttgc
tattttgtaaacactcaccttccttccttactgattggcattaataaaga
tttgatgcccaatagctgaagtaggaagggaaggcagaacttccgggcaa
aattaggaactctgggagaaggcagaagcaggggacttgccatcaggaaa
ggaagctggtcggatgtgaacgggagcaaagaggtaaagaactaaccgtg
tggtgaaacgcaggactagaataatagtaatttacattgggctagctcag
tgtctggccagctgaaggtctaagctataataagtactaaagagtctctg
tgttcatgccaggcatggtggtgcatgcctttaatctccagccacagtat
tttgtttttctctgagacagggtcttctctctgtgcatcccaaattaacc
tggtacttgctgaggctagcctcaaacttataccaatcctccccctgcct
cagccttctaagtgctgaggtatatgccaccaagccagagtcaccttttc
ttgttttgctgcttggttttctgagcttagatgcacccttatttaacttg
gggccggccgctcaccttgggaaagataagtctttcacctctgcagacct
tttgccttcttttgtaagttcaggttgatggactctccactgtaatcatt
ttgtcctaggtttgcttccagcaaatacacttgccctgattttcttttgt
tgtgttgttgagacagatgtcacttgcatagcctggcaatactaactcgc
tgctgtatagaccagctcaaacgcaacgaagaccactgtaaccagacttt
tgggttctatcccacacctttctcttttatccttccaacccccaactaga
ataggaaacttgaagtcaatgaaaaggcgtcagtcctagggcgtgatctt
gcttcaagatatctccacatta
gaattccacggaaggggctgggctcctggcctgctatcttaccaagcccc
ccgacactaacactctctcttctgctcagcacagagagaagcaccccacc
cgagggtagccactcatcactgtaatcatctggagaaaactattatccca
tcaggtcacaaagccacgggacagcagcaagcaactgcctcaggggacag
gctttgctttcccaaacctccaatttagtcacacaaaagaaagggtggca
agctagcattaactgtgcccttagagaagagccacttcccgcctgcaggg
gtggcagtgactttactgggttaccaaatggatataaagaccgaagtaaa
cattgtaattttctgttttgtctctggcacagggggagtggtaccatcta
cacagtctgtaaacagtaataatgccagatgtaacaaaagaacagggctc
cccccatctctccgcccccatccatccccacccgcctaatgccattcctt
ctgagattactcatcttgaggaaacacagaggctccctatagtccatatg
ctgctaccaaatggaagggagtgagagtccaagtttgcactgatttcctc
cttgctgttacacaaagccagaatatttgagactcaagacatgtttggtt
gattttgttttttaagacaaggtatcactacatggcactggctggcctag
aattcactctgtatcccaggctggcctagaactcacagagatccacttgc
ctctccctccagggctaggaattcagatctgtgccattatgcttggctaa
aaaaattatatcccttcttgaatttttttttttctttttccttttttctc
actgctagggatcaaaccccagggcctttacactttgctaggcaagcact
ctgtaccaagctaattattaagcctcagaactcaaaaaatcatcaactgt
ttctaaaggctgatacacagacaaaagacaagggcaaggagaggtacatg
aatgcaaggcgtggaccacacaaatatgctgaagtctagactcaacaaaa
ccgaatgtgtgaacatataatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46166021_46167216
seq2: B6Ng01-317H22.b_48_1219 (reverse)

seq1  TAAT-TGGAGATATCCTGAAGACAAAGATCACACGCCCCAAGGAACTGGA  49
      |||| |||||||||| |||||   |||||  ||||||| |  | ||||  
seq2  TAATGTGGAGATATCTTGAAG--CAAGAT--CACGCCCTA--GGACTG--  42

seq1  CACCCCCTTTTCCTTTGACCTCATTTGTCTCCTA-TCTAGTGTTGGGGGG  98
       || ||  ||| | ||||| |||   || ||||| |||||   | |||||
seq2  -ACGCC--TTTTCATTGACTTCA--AGTTTCCTATTCTAG---TTGGGGG  84

seq1  TTGGAAGGGATAAAGGAGAAGGTGGTGGGATAAGAACCCAAAAGTCTGGT  148
      |||||| ||||||| ||||| |  ||||||| ||||||||||||||||||
seq2  TTGGAA-GGATAAAAGAGAAAGGTGTGGGAT-AGAACCCAAAAGTCTGGT  132

seq1  TACAGTGGGTCTCTGTGCGTTTGGAGGCTGGTCTATACAGCAGCGAGTTT  198
      ||||||||   ||  ||||||||   |||||||||||||||||||||  |
seq2  TACAGTGGTCTTCGTTGCGTTTG--AGCTGGTCTATACAGCAGCGAG--T  178

seq1  TAGTATGGCCAGGGCTATGC-AGTGACATCCTGTCTCAACAACAACAACA  247
      |||||| |||| |||||||| |||||||| ||||||||||||| ||||| 
seq2  TAGTATTGCCA-GGCTATGCAAGTGACAT-CTGTCTCAACAAC-ACAAC-  224

seq1  AAAAGAAAATCAGGGCAAGTGTATTTGCTGGAAGCAAACCTAGGACAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATCAGGGCAAGTGTATTTGCTGGAAGCAAACCTAGGACAAAA  274

seq1  TGATTACAGTGGAGAGTCCATCAACCTGAACTTACAAAAGAAGGCAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACAGTGGAGAGTCCATCAACCTGAACTTACAAAAGAAGGCAAAAG  324

seq1  GTCTGCAGAGGTGAAAGACCTTATCTTTCCCAAGGTGAGCGGCCGGCCCC  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCTGCAGAGGTGAAAGA-CTTATCTTTCCCAAGGTGAGCGGCCGGCCCC  373

seq1  AAGTTAAATAAGGGTGCATCTAAGCTCAGAAAACCAAGCAGCAAAACAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATAAGGGTGCATCTAAGCTCAGAAAACCAAGCAGCAAAACAAG  423

seq1  AAAAGGTGACTCTGGCTTGGTGGCATATACCTCAGCACTTAGAAGGCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGACTCTGGCTTGGTGGCATATACCTCAGCACTTAGAAGGCTGA  473

seq1  GGCAGGGGGAGGATTGGTATAAGTTTGAGGCTAGCCTCAGCAAGTACCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGAGGATTGGTATAAGTTTGAGGCTAGCCTCAGCAAGTACCAG  523

seq1  GTTAATTTGGGATGCACAGAGAGAAGACCCTGTCTCAGAGAAAAACAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTGGGATGCACAGAGAGAAGACCCTGTCTCAGAGAAAAACAAAA  573

seq1  TACTGTGGCTGGAGATTAAAGGCATGCACCACCATGCCTGGCATGAACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGCTGGAGATTAAAGGCATGCACCACCATGCCTGGCATGAACAC  623

seq1  AGAGACTCTTTAGTACTTATTATAGCTTAGACCTTCAGCTGGCCAGACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTTTAGTACTTATTATAGCTTAGACCTTCAGCTGGCCAGACAC  673

seq1  TGAGCTAGCCCAATGTAAATTACTATTATTCTAGTCCTGCGTTTCACCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGCCCAATGTAAATTACTATTATTCTAGTCCTGCGTTTCACCAC  723

seq1  ACGGTTAGTTCTTTACCTCTTTGCTCCCGTTCACATCCGACCAGCTTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTAGTTCTTTACCTCTTTGCTCCCGTTCACATCCGACCAGCTTCCT  773

seq1  TTCCTGATGGCAAGTCCCCTGCTTCTGCCTTCTCCCAGAGTTCCTAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATGGCAAGTCCCCTGCTTCTGCCTTCTCCCAGAGTTCCTAATTT  823

seq1  TGCCCGGAAGTTCTGCCTTCCCTTCCTACTTCAGCTATTGGGCATCAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGAAGTTCTGCCTTCCCTTCCTACTTCAGCTATTGGGCATCAAAT  873

seq1  CTTTATTAATGCCAATCAGTAAGGAAGGAAGGTGAGTGTTTACAAAATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAATGCCAATCAGTAAGGAAGGAAGGTGAGTGTTTACAAAATAG  923

seq1  CAAACACAGTGATGGGGCTGGATCTGTGGAACCAGGAGGAGCAGGCCTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGTGATGGGGCTGGATCTGTGGAACCAGGAGGAGCAGGCCTGG  973

seq1  AGCAAGAGTGGGGTCCAGGCATGACCAAACCTCAGAAATCTGATCTTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGGGGTCCAGGCATGACCAAACCTCAGAAATCTGATCTTGAG  1023

seq1  ATTGGCAGGTTTAAGTTTGCCCCTCCCTGCCCTAGGACTGCATGGCCCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAGGTTTAAGTTTGCCCCTCCCTGCCCTAGGACTGCATGGCCCAG  1073

seq1  CACACATAGACCTGTGCCCCATCAGAGATCACATAGCCTGGTAGCCAGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGACCTGTGCCCCATCAGAGATCACATAGCCTGGTAGCCAGGT  1123

seq1  TAAACTTCCTTTCCCTTTATAAGGTCAAATCCAGCAGTACCTGGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCCTTTCCCTTTATAAGGTCAAATCCAGCAGTACCTGGAATTC  1172

seq1: chr19_45994915_45995984
seq2: B6Ng01-317H22.g_67_1141

seq1  GAATTCCACGGAAGGGGCTGGGCTCCTGGCCTGCTATCTTACCAAGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAAGGGGCTGGGCTCCTGGCCTGCTATCTTACCAAGCCCC  50

seq1  CCGACACTAACACTCTCTCTTCTGCTCAGCACAGAGAGAAGCACCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACTAACACTCTCTCTTCTGCTCAGCACAGAGAGAAGCACCCCACC  100

seq1  CGAGGGTAGCCACTCATCACTGTAATCATCTGGAGAAAACTATTATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGTAGCCACTCATCACTGTAATCATCTGGAGAAAACTATTATCCCA  150

seq1  TCAGGTCACAAAGCCACGGGACAGCAGCAAGCAACTGCCTCAGGGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCACAAAGCCACGGGACAGCAGCAAGCAACTGCCTCAGGGGACAG  200

seq1  GCTTTGCTTTCCCAAACCTCCAATTTAGTCACACAAAAGAAAGGGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTTTCCCAAACCTCCAATTTAGTCACACAAAAGAAAGGGTGGCA  250

seq1  AGCTAGCATTAACTGTGCCCTTAGAGAAGAGCCACTTCCCGCCTGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATTAACTGTGCCCTTAGAGAAGAGCCACTTCCCGCCTGCAGGG  300

seq1  GTGGCAGTGACTTTACTGGGTTACCAAATGGATATAAAGACCGAAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTGACTTTACTGGGTTACCAAATGGATATAAAGACCGAAGTAAA  350

seq1  CATTGTAATTTTCTGTTTTGTCTCTGGCACAGGGGGAGTGGTACCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAATTTTCTGTTTTGTCTCTGGCACAGGGGGAGTGGTACCATCTA  400

seq1  CACAGTCTGTAAACAGTAATAATGCCAGATGTAACAAAAGAACAGGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTGTAAACAGTAATAATGCCAGATGTAACAAAAGAACAGGGCTC  450

seq1  CCCCCATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTCTCCGCCCCCATCCATCCCCACCCGCCTAATGCCATTCCTT  500

seq1  CTGAGATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTACTCATCTTGAGGAAACACAGAGGCTCCCTATAGTCCATATG  550

seq1  CTGCTACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCAAATGGAAGGGAGTGAGAGTCCAAGTTTGCACTGATTTCCTC  600

seq1  CTTGCTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTACACAAAGCCAGAATATTTGAGACTCAAGACATGTTTGGTT  650

seq1  GATTTTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTTTTTAAGACAAGGTATCACTACATGGCACTGGCTGGCCTAG  700

seq1  AATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTGC  750

seq1  CTCTCCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCTAA  800

seq1  AAAAATTATATCCCTTCTTGAA-TTTTTTTTTTCTTTTTCCTTTTTTCTC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAATTATATCCCTTCTTGAATTTTTTTTTTTCTTTTTCCTTTTTTCTC  850

seq1  ACTGCTAGGGATCAAACCCCAGGGCC-TTACAC-TTGCTAGGCAAGCACT  897
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  ACTGCTAGGGATCAAACCCCAGGGCCTTTACACTTTGCTAGGCAAGCACT  900

seq1  CTGTACCAAGCTAATTATTAAGCCTCAGAACTCAAAAAATCATCAACTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAAGCTAATTATTAAGCCTCAGAACTCAAAAAATCATCAACTGT  950

seq1  TTCTAAAGGCTGATACACAGACAAAAGGACAGGGCAAGAGAG-GGAACAA  996
      |||||||||||||||||||||||||||   |||||||| ||| || ||| 
seq2  TTCTAAAGGCTGATACACAGACAAAAGACAAGGGCAAG-GAGAGGTACAT  999

seq1  GAAAGC-AGGCGTGGACCACAC-AATATGCTGAAGTCTAGACTCAAACAA  1044
      ||| || ||||||||||||||| ||||||||||||||||||||| |||||
seq2  GAATGCAAGGCGTGGACCACACAAATATGCTGAAGTCTAGACTC-AACAA  1048

seq1  AACCGAAT-TGTGAACAATAAATAGTA  1070
      |||||||| ||||||||   |||||||
seq2  AACCGAATGTGTGAACATATAATAGTA  1075