BAC Information

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BAC

Clone NameB6Ng01-317P10
Chromosome19 (Build37)
Map Location 49,230,702 - 49,431,829
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317P10.bB6Ng01-317P10.g
ACCGA107974GA107975
length1,0341,091
definitionB6Ng01-317P10.b B6Ng01-317P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,230,702 - 49,231,296)(49,430,741 - 49,431,829)
sequence
gaattcatcagaatattcagtcctccatgactctctgactctttttttat
actacttagaatgttttagtctcttacctaatctacagggtaagatgtta
caataaatctccaacccaaatatgccccggcaatgaaaacacaactcagt
taacacgactgtgcacctagattgggcagatctactgttacactaccatc
ttccccatctatgagaccccttagaatttgcagtttctccaggccatgtg
cttctgctctgcttttctttttcctcctcctctgcatcctctccctcttc
cattttctcctccttctctctccttaccttctgctccaccttcccttgat
ctgcccaatcatcagctctcctttattttacaaggtaaggtgggaagcaa
gtttgcaggaaatcacctgagtgctgactcattccttgttcacagcccct
cacaggagaacagaattaaaatcaaatataactatctctagggatatcta
caacattttccccttcctgtccaattaaaagactattttatttatctcag
atataattgaacataactattactattttgtaatttttaaagtagaagag
acctaacacccagtccatcatctttgttaattaaatagaacctctgtcat
ctatccttacttaaaagactatagttctgcacctggctatatcttggctt
tagattgaatgccatctgaaaacatcctcccaaatctgtccctctcaaag
taaaaagtctgggttgcctaggagactatgtagttttttaaccccatcag
aaatccaagaacaactgatattaactgaaaatatataggaagcgtaaaac
agcttccaaaacttagccagtttatagagaccactgatcgcttggacagt
cctttacttcaacatgttggagcatcagtcttcagcctactggccagggt
catgtgacagacttaggagaaaacaggatataaggactagcctactctgt
ctaggcagaatcagctatcctaacctgtcctttc

gaattcaaataatgattattcttggtgttctataaaaccagttccaactt
gtgtggtcccttgaaggaaatgtctgataaaagaggcaaagctatagtgg
ctctagggagcgagcaagctaattgatttacagcagctttaatgcggttt
ctggaggtgacggaacatatgagttatcaaagggaaaatcaagactttta
ttgtccctccacttacactgacatcactgtctgcccccagactacctgga
agcaaagctgtacttccatctctagaggagaaataatgagttaccagaaa
caaagtgaagaataaaatctacccaaacatttatcacctgacttcacccc
atagttttccaaagatgacagttatagccagaaagtatgtctgtttctta
ggagtaatgaatttcaacgtttagtctttatcatcacatgccagtgtatc
tagatggtgaaaaagaccaacaatctgaaagtgtcaaaacctatgtataa
gagaccaactgaagccaaagccccaatccattgtggatgtgaaggacagc
agtgtattcctgaagtgtaataaggagaatcagagtccataagacatttc
ctagatgttttaaagagacctcaaggtccatcccatagatctttcatgaa
tctacaaccctgtccttccagacactgttctgagtaagttccgcagtgca
ctggaaaagaacacagagaacactttctcaaagccttcattctagattga
aacaacgaggctaaagtatgtgtggtagaagccaatacatgaagaatgct
caatagtaccagagtgacaagtacagacttaatcactgatgtgcaaaata
gctcagcaaataagttgaatttttaaaaattttgtaccgggctcacaaac
tgttctcattaatgcaatcacgtatacccaggtgtttctgaactaggatt
tggctccaattgtctgatctctgcggcatgcctcctttcagaagtattct
attttaaaacctgcatctggctatacagttttcatgatgatggccacatg
ttatggggttattttgggatgtagcatcaaagaattctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49230702_49231296
seq2: B6Ng01-317P10.b_49_643

seq1  GAATTCATCAGAATATTCAGTCCTCCATGACTCTCTGACTCTTTTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAATATTCAGTCCTCCATGACTCTCTGACTCTTTTTTTAT  50

seq1  ACTACTTAGAATGTTTTAGTCTCTTACCTAATCTACAGGGTAAGATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTAGAATGTTTTAGTCTCTTACCTAATCTACAGGGTAAGATGTTA  100

seq1  CAATAAATCTCCAACCCAAATATGCCCCGGCAATGAAAACACAACTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATCTCCAACCCAAATATGCCCCGGCAATGAAAACACAACTCAGT  150

seq1  TAACACGACTGTGCACCTAGATTGGGCAGATCTACTGTTACACTACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGACTGTGCACCTAGATTGGGCAGATCTACTGTTACACTACCATC  200

seq1  TTCCCCATCTATGAGACCCCTTAGAATTTGCAGTTTCTCCAGGCCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATCTATGAGACCCCTTAGAATTTGCAGTTTCTCCAGGCCATGTG  250

seq1  CTTCTGCTCTGCTTTTCTTTTTCCTCCTCCTCTGCATCCTCTCCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCTGCTTTTCTTTTTCCTCCTCCTCTGCATCCTCTCCCTCTTC  300

seq1  CATTTTCTCCTCCTTCTCTCTCCTTACCTTCTGCTCCACCTTCCCTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCCTCCTTCTCTCTCCTTACCTTCTGCTCCACCTTCCCTTGAT  350

seq1  CTGCCCAATCATCAGCTCTCCTTTATTTTACAAGGTAAGGTGGGAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAATCATCAGCTCTCCTTTATTTTACAAGGTAAGGTGGGAAGCAA  400

seq1  GTTTGCAGGAAATCACCTGAGTGCTGACTCATTCCTTGTTCACAGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGGAAATCACCTGAGTGCTGACTCATTCCTTGTTCACAGCCCCT  450

seq1  CACAGGAGAACAGAATTAAAATCAAATATAACTATCTCTAGGGATATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGAACAGAATTAAAATCAAATATAACTATCTCTAGGGATATCTA  500

seq1  CAACATTTTCCCCTTCCTGTCCAATTAAAAGACTATTTTATTTATCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTCCCCTTCCTGTCCAATTAAAAGACTATTTTATTTATCTCAG  550

seq1  ATATAATTGAACATAACTATTACTATTTTGTAATTTTTAAAGTAG  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTGAACATAACTATTACTATTTTGTAATTTTTAAAGTAG  595


seq1: chr19_49430741_49431829
seq2: B6Ng01-317P10.g_67_1157 (reverse)

seq1  CTCAG-ATTCTTTGATGCTACATCC--AAATAACCCCATAACATGTGGCC  47
      ||||| |||||||||||||||||||  |||||||||||||||||||||||
seq2  CTCAGAATTCTTTGATGCTACATCCCAAAATAACCCCATAACATGTGGCC  50

seq1  ATCATCATGAAAAACTGTATAGCCAGATGCAGGTTTTAAAATAG-ATACT  96
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  ATCATCATG-AAAACTGTATAGCCAGATGCAGGTTTTAAAATAGAATACT  99

seq1  TCTGAAAGGAGGCATGCCGCAGAGATCAGACAATTGGAGCCAAATCCTAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGAGGCATGCCGCAGAGATCAGACAATTGGAGCCAAATCCTAG  149

seq1  TTCAGAAACACCTGGGTATACGTGATTGCATTAATGAGAACAGTTTGTGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACACCTGGGTATACGTGATTGCATTAATGAGAACAGTTTGTGA  199

seq1  GCCCGGTACAAAATTTTTAAAAATTCAACTTATTTGCCTGAGCTATTTTG  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCCGGTACAAAATTTTTAAAAATTCAACTTATTTG-CTGAGCTATTTTG  248

seq1  CACATCAGTGATTAAGTCTGTACTTGTCACTCTGGTACTATTGAGCATTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTGATTAAGTCTGTACTTGTCACTCTGGTACTATTGAGCATTC  298

seq1  TTCATGTATTGGCTTCTACCACACATACTTTAGCCTCGTTGTTTCAATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATTGGCTTCTACCACACATACTTTAGCCTCGTTGTTTCAATCT  348

seq1  AGAATGAAGGCTTTGAGAAAGTGTTCTCTGTGTTCTTTTCCAGTGCACTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGGCTTTGAGAAAGTGTTCTCTGTGTTCTTTTCCAGTGCACTG  398

seq1  CGGAACTTACTCAGAACAGTGTCTGGAAGGACAGGGTTGTAGATTCATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTTACTCAGAACAGTGTCTGGAAGGACAGGGTTGTAGATTCATGA  448

seq1  AAGATCTATGGGATGGACCTTGAGGTCTCTTTAAAACATCTAGGAAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTATGGGATGGACCTTGAGGTCTCTTTAAAACATCTAGGAAATGT  498

seq1  CTTATGGACTCTGATTCTCCTTATTACACTTCAGGAATACACTGCTGTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGACTCTGATTCTCCTTATTACACTTCAGGAATACACTGCTGTCC  548

seq1  TTCACATCCACAATGGATTGGGGCTTTGGCTTCAGTTGGTCTCTTATACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCCACAATGGATTGGGGCTTTGGCTTCAGTTGGTCTCTTATACA  598

seq1  TAGGTTTTGACACTTTCAGATTGTTGGTCTTTTTCACCATCTAGATACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGACACTTTCAGATTGTTGGTCTTTTTCACCATCTAGATACAC  648

seq1  TGGCATGTGATGATAAAGACTAAACGTTGAAATTCATTACTCCTAAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTGATGATAAAGACTAAACGTTGAAATTCATTACTCCTAAGAAA  698

seq1  CAGACATACTTTCTGGCTATAACTGTCATCTTTGGAAAACTATGGGGTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACTTTCTGGCTATAACTGTCATCTTTGGAAAACTATGGGGTGA  748

seq1  AGTCAGGTGATAAATGTTTGGGTAGATTTTATTCTTCACTTTGTTTCTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTGATAAATGTTTGGGTAGATTTTATTCTTCACTTTGTTTCTGG  798

seq1  TAACTCATTATTTCTCCTCTAGAGATGGAAGTACAGCTTTGCTTCCAGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATTATTTCTCCTCTAGAGATGGAAGTACAGCTTTGCTTCCAGGT  848

seq1  AGTCTGGGGGCAGACAGTGATGTCAGTGTAAGTGGAGGGACAATAAAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGGGCAGACAGTGATGTCAGTGTAAGTGGAGGGACAATAAAAGT  898

seq1  CTTGATTTTCCCTTTGATAACTCATATGTTCCGTCACCTCCAGAAACCGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTCCCTTTGATAACTCATATGTTCCGTCACCTCCAGAAACCGC  948

seq1  ATTAAAGCTGCTGTAAATCAATTAGCTTGCTCGCTCCCTAGAGCCACTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCTGCTGTAAATCAATTAGCTTGCTCGCTCCCTAGAGCCACTAT  998

seq1  AGCTTTGCCTCTTTTATCAGACATTTCCTTCAAGGGACCACACAAGTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCCTCTTTTATCAGACATTTCCTTCAAGGGACCACACAAGTTGG  1048

seq1  AACTGGTTTTATAGAACACCAAGAATAATCATTATTTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTTATAGAACACCAAGAATAATCATTATTTGAATTC  1091


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