BAC Information

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BAC

Clone NameB6Ng01-318M18
Chromosome19 (Build37)
Map Location 31,006,092 - 31,079,240
singlet/doubletdoublet
Overlap genePrkg1
Upstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995
Downstream geneCstf2t, 8430431K14Rik, 1810073H04Rik, Asah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M18.bB6Ng01-318M18.g
ACCGA108593GA108594
length1,117985
definitionB6Ng01-318M18.b B6Ng01-318M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,006,092 - 31,007,217)(31,078,641 - 31,079,240)
sequence
gaattctctgcctggaggagagcatttgctctggatcccaacccacttaa
ccagcattgcagtagcagctcaattccccagcggttctgactcatccagg
atcacaggatcacaggaggtgtttgggctgattttttctcttcattctac
gaatgcactgtggatattccagaatattctataagtattctgtcaaagtt
tctaaaagagagagaaactcaagcaaaaaatatatatacatatatataat
aatgctgaataagctgtcaaaagtcacagagcatctagtaagtagaattg
agattggaattcagcaatctgactcacaacctagactgagctctatataa
gctttcctttaggatgttagggaacattctctacttctccatgaagagtg
ccactattacagaacacagcgtgctgggaggaaggaggcaggagtgaaat
aagacacacagagagcataagagccaaaatacacttgttatgtaatttac
atgtcgtgccacaaaacagaaatgtatgtctcctatataaaacagaagaa
aacatctgttaaaggtactaacatataaagcttcaccctgcttcctgtct
atctctgctccgtggtcctctcagcagttttatttgctacttactgctcc
atcacttcaaggaatgctcatagtcttatgagctcctgaactataatgag
cacatggaaatctccacctctgccaggggttaggcctacacattgtgtct
tccaggtaaaagcagagaggtcagatgtcctctagtcccatgtaggaaat
gtataacattgaaacttgtccacaggataaacttctttttgagtctccta
ctaacatgtcatggcactaccaggttaggacttgagtggcagccatatta
cccttaccatagagtctacatgcctggtacctagactctgtctatgaaca
ctggacactggtggtgacttggtgggaaatggagatgggttacacgtcct
acaacatcatgatatggcaacctagatcagtctgatatgataggtcacaa
catccaggttcatgtataataaacataaaaaatgtgaaagtacttattta
tttcagatgatgatcgc
gaattctctccttgtaattcttctagtcaataaatggtgtacgtgggtcc
catctcctgagatgattcgccaaaaaatgggctgatttcatgttctcttt
tgctttttgttgtctgtgataaataacaagactaaaagcaattttgagaa
aaattttcatataagttttacagcttatagtccaccatgaaagaaagtta
gggcaggaactcaaggcagaaacctgaaggcagtgactaaagcagaggcc
atggaggaactctgtggacctgtttgctcttggtggcttgcttaggcttt
ttctctcatccaggaccacctgcccaggagtggcactgccccagtatgct
gcatcctcccccatcaatcagtaatgaagaaagtgcttctcccttgccat
cctgatgagggcatttctgaattggcattcatcttcttaaatgagatgat
aattcaaagagtccacttccatgacatttaagaacacccaaaaggccagc
ttcatctagctgcagcaatcttcatcatcttagactcaaactcagaacaa
ataaaacagggacttgctattttcctcactcccagtccctagtaaccact
ttttaaatttgtatgcctttgagtttggttgtgtgcatctcctatacact
aaaatcagacatttgtttgtccattggtgtgcggactgtttcactgtgca
tgttcttaaagttaacccgaattatattgtgcatctgaacttttaagatt
gagtaacacttgatcgtgtgcttattcctattttatttattagttcgttc
tacgaagaacctttggatcatttcaaccctttccactattgcgattaatg
ctgcagtgggtagtgccatgcacacacttgcttatggttctgttggcatt
gacttggggatgtaccttttaatttgttgccagtacatagtgttctgatt
ttcttcccatcttcagtaataggcgttttcccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31006092_31007217
seq2: B6Ng01-318M18.b_47_1163

seq1  GAATTCTCTGCCTGGAGGAGAGCATTTGCTCTGGATCCCAACCCACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCTGGAGGAGAGCATTTGCTCTGGATCCCAACCCACTTAA  50

seq1  CCAGCATTGCAGTAGCAGCTCAATTCCCCAGCGGTTCTGACTCATCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGCAGTAGCAGCTCAATTCCCCAGCGGTTCTGACTCATCCAGG  100

seq1  ATCACAGGATCACAGGAGGTGTTTGGGCTGATTTTTTCTCTTCATTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGATCACAGGAGGTGTTTGGGCTGATTTTTTCTCTTCATTCTAC  150

seq1  GAATGCACTGTGGATATTCCAGAATATTCTATAAGTATTCTGTCAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACTGTGGATATTCCAGAATATTCTATAAGTATTCTGTCAAAGTT  200

seq1  TCTAAAAGAGAGAGAAACTCAAGCAAAAAATATATATACATATATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGAGAGAGAAACTCAAGCAAAAAATATATATACATATATATAAT  250

seq1  AATGCTGAATAAGCTGTCAAAAGTCACAGAGCATCTAGTAAGTAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAATAAGCTGTCAAAAGTCACAGAGCATCTAGTAAGTAGAATTG  300

seq1  AGATTGGAATTCAGCAATCTGACTCACAACCTAGACTGAGCTCTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGAATTCAGCAATCTGACTCACAACCTAGACTGAGCTCTATATAA  350

seq1  GCTTTCCTTTAGGATGTTAGGGAACATTCTCTACTTCTCCATGAAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTTTAGGATGTTAGGGAACATTCTCTACTTCTCCATGAAGAGTG  400

seq1  CCACTATTACAGAACACAGCGTGCTGGGAGGAAGGAGGCAGGAGTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTACAGAACACAGCGTGCTGGGAGGAAGGAGGCAGGAGTGAAAT  450

seq1  AAGACACACAGAGAGCATAAGAGCCAAAATACACTTGTTATGTAATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACAGAGAGCATAAGAGCCAAAATACACTTGTTATGTAATTTAC  500

seq1  ATGTCGTGCCACAAAACAGAAATGTATGTCTCCTATATAAAACAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTGCCACAAAACAGAAATGTATGTCTCCTATATAAAACAGAAGAA  550

seq1  AACATCTGTTAAAGGTACTAACATATAAAGCTTCACCCTGCTTCCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTTAAAGGTACTAACATATAAAGCTTCACCCTGCTTCCTGTCT  600

seq1  ATCTCTGCTCCGTGGTCCTCTCAGCAGTTTTATTTGCTACTTACTGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTCCGTGGTCCTCTCAGCAGTTTTATTTGCTACTTACTGCTCC  650

seq1  ATCACTTCAAGGAATGCTCATAGTCTTATGAGCTCCTGAACTATAATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTCAAGGAATGCTCATAGTCTTATGAGCTCCTGAACTATAATGAG  700

seq1  CACATGGAAATCTCCACCTCTGCCAGGGGTTAGGCCTACACATTGTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAAATCTCCACCTCTGCCAGGGGTTAGGCCTACACATTGTGTCT  750

seq1  TCCAGGTAAAAGCAGAGAGGTCAGATGTCCTCTAGTCCCATGTAGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTAAAAGCAGAGAGGTCAGATGTCCTCTAGTCCCATGTAGGAAAT  800

seq1  GTATAACATTGAAACTTGTCCACAGGATAAACTTCTTTTTGAGTCTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACATTGAAACTTGTCCACAGGATAAACTTCTTTTTGAGTCTCCTA  850

seq1  CTAACATGTCATGGCACTACCAGGTTAGGACTTGAGTGGCAGCCATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGTCATGGCACTACCAGGTTAGGACTTGAGTGGCAGCCATATTA  900

seq1  -CCTTACCATAGAGTCTACATGCCTGGTACCTAGACTCTGTCTATGAACA  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCATAGAGTCTACATGCCTGGTACCTAGACTCTGTCTATGAACA  950

seq1  CTGGACACTGGTGGTGACTTGGTGGG-AATGGAGATGGGTTACAAGGTCT  998
      |||||||||||||||||||||||||| |||||||||||||||| | ||| 
seq2  CTGGACACTGGTGGTGACTTGGTGGGAAATGGAGATGGGTTAC-ACGTCC  999

seq1  TACAACATCCAATGATATGGCAAACCTAGAATCAGTCTTGGATATGGATA  1048
      |||||||||  |||||||||| ||||||| ||||||||  ||||| ||||
seq2  TACAACATC--ATGATATGGC-AACCTAG-ATCAGTCT--GATAT-GATA  1042

seq1  GGGTCAC-ACATTCAGTTTCAATGTTATAATAAACATAAAAAAATGTGAA  1097
       |||||| |||| ||| ||| ||| |||||||||||| ||||||||||||
seq2  -GGTCACAACATCCAGGTTC-ATG-TATAATAAACAT-AAAAAATGTGAA  1088

seq1  ATTAC-TAATTATTTCAGGATGATGATCGC  1126
      | ||| || |||||||| ||||||||||||
seq2  AGTACTTATTTATTTCA-GATGATGATCGC  1117

seq1: chr19_31078641_31079240
seq2: B6Ng01-318M18.g_67_666 (reverse)

seq1  AGTGGTTACTAGGGACTGGGAGTGAGGAAAATAGCAAGTCCCTGTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTACTAGGGACTGGGAGTGAGGAAAATAGCAAGTCCCTGTTTTAT  50

seq1  TTGTTCTGAGTTTGAGTCTAAGATGATGAAGATTGCTGCAGCTAGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAGTTTGAGTCTAAGATGATGAAGATTGCTGCAGCTAGATGAA  100

seq1  GCTGGCCTTTTGGGTGTTCTTAAATGTCATGGAAGTGGACTCTTTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTTTGGGTGTTCTTAAATGTCATGGAAGTGGACTCTTTGAATT  150

seq1  ATCATCTCATTTAAGAAGATGAATGCCAATTCAGAAATGCCCTCATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCATTTAAGAAGATGAATGCCAATTCAGAAATGCCCTCATCAGG  200

seq1  ATGGCAAGGGAGAAGCACTTTCTTCATTACTGATTGATGGGGGAGGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGGGAGAAGCACTTTCTTCATTACTGATTGATGGGGGAGGATGC  250

seq1  AGCATACTGGGGCAGTGCCACTCCTGGGCAGGTGGTCCTGGATGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTGGGGCAGTGCCACTCCTGGGCAGGTGGTCCTGGATGAGAGAA  300

seq1  AAAGCCTAAGCAAGCCACCAAGAGCAAACAGGTCCACAGAGTTCCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAAGCAAGCCACCAAGAGCAAACAGGTCCACAGAGTTCCTCCAT  350

seq1  GGCCTCTGCTTTAGTCACTGCCTTCAGGTTTCTGCCTTGAGTTCCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCTTTAGTCACTGCCTTCAGGTTTCTGCCTTGAGTTCCTGCCC  400

seq1  TAACTTTCTTTCATGGTGGACTATAAGCTGTAAAACTTATATGAAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCTTTCATGGTGGACTATAAGCTGTAAAACTTATATGAAAATTT  450

seq1  TTCTCAAAATTGCTTTTAGTCTTGTTATTTATCACAGACAACAAAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAATTGCTTTTAGTCTTGTTATTTATCACAGACAACAAAAAGCA  500

seq1  AAAGAGAACATGAAATCAGCCCATTTTTTGGCGAATCATCTCAGGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACATGAAATCAGCCCATTTTTTGGCGAATCATCTCAGGAGATG  550

seq1  GGACCCACGTACACCATTTATTGACTAGAAGAATTACAAGGAGAGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACGTACACCATTTATTGACTAGAAGAATTACAAGGAGAGAATTC  600