BAC Information

Click to search

BAC

Clone NameB6Ng01-319A19
Chromosome19 (Build37)12 (Build37)
Map Location 4,895,596 - 4,895,76363,992,789 - 63,993,903
singlet/doubletsingletsinglet
Overlap geneBbs1
Upstream geneTcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24
Downstream geneDpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319A19.bB6Ng01-319A19.g
ACCGA108781GA108782
length9391,098
definitionB6Ng01-319A19.b B6Ng01-319A19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,895,596 - 4,895,763)(63,992,789 - 63,993,903)
sequence
gaattctttgtgggcaaaaaaatatagatataaaaataaaaagttaaaag
ttaaaaatatttttatttaaaaagatgttctaacttgaaatgtccctaat
tttgtaggcccccagaccttagcacaactaactccatgatgggagtacca
ctcaagctataaaacttgatatgtaagccgggcatggtggcacacgcctt
taatcccagtacttgggaggcagaggcaggtggatttctgagttcgaggc
cagcctggtctacaaagtgagttccaggacagccagggctatacagagaa
accctgtcttgaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa
acaaaacaaaacaaaacaaaacaaaacaaaaaaaaagacgtataaaaaat
aaaaaaataaaaaataaagacctaatctatcaaagtctgtagtctgggaa
agtctctaaatatactaaccatgctttttcttctgtaatttttcttctgc
ctaactgtattgttaactcaagtatgccaacccaggatatgacttttgtg
cttaatagtttaatctagaaataacttggtgcaatacagggatcctgaat
acaaagtgtagttgttggtccactaataagaatggtctattggcttaaat
ctttgtctcagtagtcctttctggtgaatacccaacaataatgagcaagc
aaccaatcagataaacaaacaaaactaagcaaaacaaaataaagcaaaac
attttattaaagtctagtgaaatgtggatagatgttccttttgtttgttt
cagacttgctgcctcccatatagggaaggatttataacttttgagtgtat
gtttgaaagacatctcccattgcttcccaggttcagagaagagcagtttg
cagaactctctaagaactcctctttctactgtaagccct
gaattcttgaaacatctggaattcatctatcagagcattcgcgatgagat
aactagatgattcccaaaatctagtgaaatctctgaagtctcaggatgaa
tatcaatctcagttataaataaagtacccgatacaaaggaaggcttttcc
aaaggcatactagagagcactcaagtactgtggggagccgccctcacatt
tgccattacaagatggcgctgacatcctgtgttctaagtggtaaacaaat
aatctgcacatgtgccaagggtagttctccactccatgtgctctgccttc
cccgtgacgacaactcggccaatgggctgcagccaatcagggagcgacac
gtcctaggcagaggataattctccttaaaagggacggggtttcgccattt
tctctcttgctcctgaatatgtaagcaataaagcttttgctgcagaagat
tccggtttgttgcgtctttcctggccggttgcgaacacacgtaagaaagt
acgtgttttctttgtcagaattagatataaaataaactgtaattcctaaa
tgtatagagtcaaacagctgtagctatgtttattttgtagagcagataaa
ttctctttggattataaacttcctggaatgcccagtacacagaatgattc
aatggggtctaagtaactgaatgaatatacagacaaaattacattaaagt
tagattatagcacaatgtcccaactgaaagaaaaagtttacaagcattgt
gataatattatcaaaaatatctaagacatggataaaaaaaggccctttaa
cctgtgataaaatctaaaatcatttttgtttgtttgtttttggttttgtt
ttgttttgttttgttttgttttttcgagacagggtttctctgtgtagccc
tggctgtcctggaactcactttgtagaccaggctggtagaaatccacctg
cctctgcctcccgagtgctgggattaaaggcgtgtgctacacactgacaa
atctaaatctaatacttgaaaaagatttggaattaaataaggcaataatg
tcatagaaaggactattaaacataagaatctgacttcagtgaggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4895596_4895763
seq2: B6Ng01-319A19.b_221_462 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTATTTTTTATTTTTTTATTTTTTATACGTCTTTTTTTTTGTTTTGTTTT  50

seq1  -----------------------TTATTTT-TTATTTTTTGGTTTTTTTT  26
                             || |||| || | ||||| ||| ||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  100

seq1  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  76
       |||||  ||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  150

seq1  CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCGCCTGCCTCTGCCT  126
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCT  200

seq1  CCCAAGTGCTGGGATTAAAGGCATGTGCCACCATGCCCGGCT  168
      ||||||| |||||||||||||| |||||||||||||||||||
seq2  CCCAAGTACTGGGATTAAAGGCGTGTGCCACCATGCCCGGCT  242

seq1: chr12_63992789_63993903
seq2: B6Ng01-319A19.g_69_1166

seq1  GAATTCTTGAAACATCTGGAATTCATCTATCAGAGCATTCGCGATGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACATCTGGAATTCATCTATCAGAGCATTCGCGATGAGAT  50

seq1  AACTAGATGATTCCCAAAATCTAGTGAAATCTCTGAAGTCTCAGGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATGATTCCCAAAATCTAGTGAAATCTCTGAAGTCTCAGGATGAA  100

seq1  TATCAATCTCAGTTATAAATAAAGTACCCGATACAAAGGAAGGCTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATCTCAGTTATAAATAAAGTACCCGATACAAAGGAAGGCTTTTCC  150

seq1  AAAGGCATACTAGAGAGCACTCAAGTACTGTGGGGAGCCGCCCTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATACTAGAGAGCACTCAAGTACTGTGGGGAGCCGCCCTCACATT  200

seq1  TGCCATTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAAT  250

seq1  AATCTGCACATGTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACATGTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTC  300

seq1  CCCGTGACGACAACTCGGCCAATGGGCTGCAGCCAATCAGGGAGCGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGACGACAACTCGGCCAATGGGCTGCAGCCAATCAGGGAGCGACAC  350

seq1  GTCCTAGGCAGAGGATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGCAGAGGATAATTCTCCTTAAAAGGGACGGGGTTTCGCCATTT  400

seq1  TCTCTCTTGCTCCTGAATATGTAAGCAATAAAGCTTTTGCTGCAGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGCTCCTGAATATGTAAGCAATAAAGCTTTTGCTGCAGAAGAT  450

seq1  TCCGGTTTGTTGCGTCTTTCCTGGCCGGTTGCGAACACACGTAAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTTTGTTGCGTCTTTCCTGGCCGGTTGCGAACACACGTAAGAAAGT  500

seq1  ACGTGTTTTCTTTGTCAGAATTAGATATAAAATAAACTGTAATTCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTTTCTTTGTCAGAATTAGATATAAAATAAACTGTAATTCCTAAA  550

seq1  TGTATAGAGTCAAACAGCTGTAGCTATGTTTATTTTGTAGAGCAGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGAGTCAAACAGCTGTAGCTATGTTTATTTTGTAGAGCAGATAAA  600

seq1  TTCTCTTTGGATTATAAACTTCCTGGAATGCCCAGTACACAGAATGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGATTATAAACTTCCTGGAATGCCCAGTACACAGAATGATTC  650

seq1  AATGGGGTCTAAGTAACTGAATGAATATACAGACAAAATTACATTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTCTAAGTAACTGAATGAATATACAGACAAAATTACATTAAAGT  700

seq1  TAGATTATAGCACAATGTCCCAACTGAAAGAAAAAGTTTACAAGCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATAGCACAATGTCCCAACTGAAAGAAAAAGTTTACAAGCATTGT  750

seq1  GATAATATTATCAAAAATATCTAAGACATGGATAAAAAAAGGCCCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATTATCAAAAATATCTAAGACATGGATAAAAAAAGGCCCTTTAA  800

seq1  CCTGTGATAAAATCTAAAATCATTTTTGTTTGTTTGTTTTTGGTTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATAAAATCTAAAATCATTTTTGTTTGTTTGTTTTTGGTTTTGTT  850

seq1  TTGTTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  900

seq1  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTAGAAATCCACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTAGAAATCCACCTG  950

seq1  CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCTACCACACCTGAC  1000
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCTA-CACA-CTGAC  998

seq1  AAAATCTAAAATCTTAATACTTGAAAAGAAATTTGGAATTAAATAAAGGC  1050
       |||||| ||||| ||||||||||||| | |||||||||||||| |||||
seq2  -AAATCT-AAATC-TAATACTTGAAAA-AGATTTGGAATTAAAT-AAGGC  1043

seq1  AATTAATGTCAATAGAAAAGAACTATTTAAAAACAATAAGAAAAATCTGA  1100
      || ||||||| |||| |||| ||||||   |||| |||||   |||||||
seq2  AA-TAATGTC-ATAG-AAAGGACTATT---AAAC-ATAAG---AATCTGA  1083

seq1  CTTCAGTGAGGAAAA  1115
      |||||||||||||||
seq2  CTTCAGTGAGGAAAA  1098