BAC Information

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BAC

Clone NameB6Ng01-319B19
Chromosome19 (Build37)
Map Location 16,137,962 - 16,285,616
singlet/doubletdoublet
Overlap geneGnaq, E030024N20Rik
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B19.bB6Ng01-319B19.g
ACCGA108827GA108828
length1,1611,113
definitionB6Ng01-319B19.b B6Ng01-319B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,284,471 - 16,285,616)(16,137,962 - 16,139,070)
sequence
gaattcaaaggcaacatggctacacatgggtattttgttgtgtgaacttt
tccttgggaatcagggcacctgaaacagtaagcactctactcaagtatag
cttggtgagccaatcagtttaattgtggttacttatgaaagcactcagaa
tataaaagagcatgggtcacttctgagccactgtaccactaaagatacca
actgtatatccctagggaagggcacgtcccttcccactgccataatagaa
agttgatgaccccactcctgtgcagcccacctgtaggtaattacagctac
taagtgtttaagaggacaaagacccacgctacacccagagaatagcatct
atacctgcaaatgtgtgcctgatatatgacgacagatgaagaatcaacta
tcaggtagagatgggtactatgcatttaacaactaaaggtgatgaaactg
gttgggcatgatagtgcacgcctttaatcctagcactcgggagacagagg
caggtagacagatgtctgtgagttcaggccagcctggttcaaacagggct
gattagtgaaattctgtctttaccagagaattgctgcttttagagatcaa
gaaacaacttccttaaaaggcacaaatgatactaatatttgaatattcaa
gatcccaccacaatattattaagaaacaccattccaggctgtagagtggc
tgatgtgagatcagtgtggggaggggcttagctgtcgggttaaagggaag
gtaagaagagcagtatggctaagacacatatgttgagaaggaggagggag
gcaaggggagagacctgggatgtagagactgcattcaagatacacagaat
attacagctcagaaatgagttcaaagaaagctttaagtacactacacagc
tttgagactcttgaaaggtaaagaatatggcttctgtgttcagaatgagt
ggtaacgccaaattaataagatattccaggggatccaagctaataaaaca
atgggaaatttagaccagatagcagtagaatggaatgtataatattctta
gattagagatggatgaagatacggggtgggtgaaaggtttcaaactggag
aaactcttgaattcctagctggaagatatcacaatgctactcatagaaga
aactcctaagg

gaattcatgacaactcgactgaagtgggagagaatttccatcgtctgaga
taagaggaatctcaagtggaagaggtttaagggagaaaggaaaactttgt
tttgagacacagttgtggcgtctctgaggcgtcccagcagacatgtccag
aaggcagctgcctgagtgtctcaagaggcgcgctggtcacaagatagaaa
tgtggggtttgttgacatatggataaaagaattcattaagaagctgagcg
cacaaggaaaagaaaccaaggactgatccctgggggaagatgaacagatc
tgggagatgggtactaagacaaagacggaagaggaaggaccagagggacc
tgaggcaaacaaaaaaggatgtgggtgtcttggacgccaaggaaaagcat
gtggaaaggaggtgatcaaacacctgaactgcggaatagtagtacctgcg
tgataatctgaatgacataattggtgtgaattcctaatcacaatgtttgg
tgttagtaagggctcaaaagcacacgtggtattttaacacctaatgtctc
tgaacaaaaaaagaaaccaagccctcactataaagctgcccagttcctat
gatgaactccagagggcgctcgaagactttcttccctgtcagttttagct
ataagggaaaatggattcccagggcaaacaacccttcgtctgaaaggctc
gaaggtccgatgcggtgagtgtcaaacgtctgtgtggactagaatgtctt
gatcctgttaaaatgctgatcctggccagggaggtggctcagtgagtgga
agcactggtttggcagccctttttgagccacaatcttagtacatctgtgt
tgagatggggaggaacgtggctggaaccttagggctgctcctgtagcagg
caagaaagatcagactgcgtagtggtgttaggtctcaagagcccaggaca
cgtggttcagtacttgaggaccttctggcacttctcacccagtctgctac
acaaacctctaggggaagcaggaggggcacacttctgccttccctttccc
tgtctcatccgtaattaacctagccaattgggaatactctggtctccttg
aaccctgggtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16284471_16285616
seq2: B6Ng01-319B19.b_48_1208 (reverse)

seq1  CCTTAGGA--TTC-TCTA-GAGT-GCATTGTGTTA--TTTCAGCTA-GAA  42
      ||||||||  ||| |||| |||| |||||||| ||  || |||||| |||
seq2  CCTTAGGAGTTTCTTCTATGAGTAGCATTGTGATATCTTCCAGCTAGGAA  50

seq1  TTCCAG-GTTTCTCCCAGTTTGAACCC--TCACC--ACCCGTATC-TCAT  86
      ||| || |||||| |||||||||| ||  |||||   |||||||| ||||
seq2  TTCAAGAGTTTCT-CCAGTTTGAAACCTTTCACCCACCCCGTATCTTCAT  99

seq1  CCATCTCTAATCT-AGAATATTATACA-TCCATCCTACTGCTATCTTGGT  134
      ||||||||||||| ||||||||||||| ||||| ||||||||||| ||||
seq2  CCATCTCTAATCTAAGAATATTATACATTCCATTCTACTGCTATC-TGGT  148

seq1  CTAAATTT-CCATTGTTTTATTAGCTTGGAT-CCCTGGAATATCTTATTA  182
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CTAAATTTCCCATTGTTTTATTAGCTTGGATCCCCTGGAATATCTTATTA  198

seq1  ATTTGGCGTTACCACTCATTCTGAACACAGAAGCCATATTCTTTACCTTT  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCGTTACCACTCATTCTGAACACAGAAGCCATATTCTTTACCTTT  248

seq1  CAAGAGTCTCAAAGCTGTGTAGTGTACTTAAAGCTTTCTTTGAACTCATT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCTCAAAGCTGTGTAGTGTACTTAAAGCTTTCTTTGAACTCATT  298

seq1  TCCTGAGCTGTAATATTCTGTGTATCTTGAATGCAGTCTCTACATCCCAG  332
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTGAGCTGTAATATTCTGTGTATCTTGAATGCAGTCTCTACATCCCAG  347

seq1  GTCTCTCCCCTTGCCTCCCTCCTCCTTCTCAACATATGTGTCTTAGCCAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCCTTGCCTCCCTCCTCCTTCTCAACATATGTGTCTTAGCCAT  397

seq1  ACTGCTCTTCTTACCTTCCCTTTAACCCGACAGCTAAGCCCCTCCCCACA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCTTACCTTCCCTTTAACCCGACAGCTAAGCCCCTCCCCACA  447

seq1  CTGATCTCACATCAGCCACTCTACAGCCTGGAATGGTGTTTCTTAATAAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCACATCAGCCACTCTACAGCCTGGAATGGTGTTTCTTAATAAT  497

seq1  ATTGTGGTGGGATCTTGAATATTCAAATATTAGTATCATTTGTGCCTTTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTGGGATCTTGAATATTCAAATATTAGTATCATTTGTGCCTTTT  547

seq1  AAGGAAGTTGTTTCTTGATCTCTAAAAGCAGCAATTCTCTGGTAAAGACA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTTGTTTCTTGATCTCTAAAAGCAGCAATTCTCTGGTAAAGACA  597

seq1  GAATTTCACTAATCAGCCCTGTTTGAACCAGGCTGGCCTGAACTCACAGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACTAATCAGCCCTGTTTGAACCAGGCTGGCCTGAACTCACAGA  647

seq1  CATCTGTCTACCTGCCTCTGTCTCCCGAGTGCTAGGATTAAAGGCGTGCA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCTACCTGCCTCTGTCTCCCGAGTGCTAGGATTAAAGGCGTGCA  697

seq1  CTATCATGCCCAACCAGTTTCATCACCTTTAGTTGTTAAATGCATAGTAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGCCCAACCAGTTTCATCACCTTTAGTTGTTAAATGCATAGTAC  747

seq1  CCATCTCTACCTGATAGTTGATTCTTCATCTGTCGTCATATATCAGGCAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTACCTGATAGTTGATTCTTCATCTGTCGTCATATATCAGGCAC  797

seq1  ACATTTGCAGGTATAGATGCTATTCTCTGGGTGTAGCGTGGGTCTTTGTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCAGGTATAGATGCTATTCTCTGGGTGTAGCGTGGGTCTTTGTC  847

seq1  CTCTTAAACACTTAGTAGCTGTAATTACCTACAGGTGGGCTGCACAGGAG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAACACTTAGTAGCTGTAATTACCTACAGGTGGGCTGCACAGGAG  897

seq1  TGGGGTCATCAACTTTCTATTATGGCAGTGGGAAGGGACGTGCCCTTCCC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCATCAACTTTCTATTATGGCAGTGGGAAGGGACGTGCCCTTCCC  947

seq1  TAGGGATATACAGTTGGTATCTTTAGTGGTACAGTGGCTCAGAAGTGACC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATATACAGTTGGTATCTTTAGTGGTACAGTGGCTCAGAAGTGACC  997

seq1  CATGCTCTTTTATATTCTGAGTGCTTTCATAAGTAACCACAATTAAACTG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTTTATATTCTGAGTGCTTTCATAAGTAACCACAATTAAACTG  1047

seq1  ATTGGCTCACCAAGCTATACTTGAGTAGAGTGCTTACTGTTTCAGGTGCC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTCACCAAGCTATACTTGAGTAGAGTGCTTACTGTTTCAGGTGCC  1097

seq1  CTGATTCCCAAGGAAAAGTTCACACAACAAAATACCCATGTGTAGCCATG  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCCAAGGAAAAGTTCACACAACAAAATACCCATGTGTAGCCATG  1147

seq1  TTGCCTTTGAATTC  1146
      ||||||||||||||
seq2  TTGCCTTTGAATTC  1161


seq1: chr19_16137962_16139070
seq2: B6Ng01-319B19.g_67_1179

seq1  GAATTCATGACAACTCGACTGAAGTGGGAGAGAATTTCCATCGTCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACAACTCGACTGAAGTGGGAGAGAATTTCCATCGTCTGAGA  50

seq1  TAAGAGGAATCTCAAGTGGAAGAGGTTTAAGGGAGAAAGGAAAACTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAATCTCAAGTGGAAGAGGTTTAAGGGAGAAAGGAAAACTTTGT  100

seq1  TTTGAGACACAGTTGTGGCGTCTCTGAGGCGTCCCAGCAGACATGTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACACAGTTGTGGCGTCTCTGAGGCGTCCCAGCAGACATGTCCAG  150

seq1  AAGGCAGCTGCCTGAGTGTCTCAAGAGGCGCGCTGGTCACAAGATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTGCCTGAGTGTCTCAAGAGGCGCGCTGGTCACAAGATAGAAA  200

seq1  TGTGGGGTTTGTTGACATATGGATAAAAGAATTCATTAAGAAGCTGAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTTGTTGACATATGGATAAAAGAATTCATTAAGAAGCTGAGCG  250

seq1  CACAAGGAAAAGAAACCAAGGACTGATCCCTGGGGGAAGATGAACAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAAAAGAAACCAAGGACTGATCCCTGGGGGAAGATGAACAGATC  300

seq1  TGGGAGATGGGTACTAAGACAAAGACGGAAGAGGAAGGACCAGAGGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGGTACTAAGACAAAGACGGAAGAGGAAGGACCAGAGGGACC  350

seq1  TGAGGCAAACAAAAAAGGATGTGGGTGTCTTGGACGCCAAGGAAAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAACAAAAAAGGATGTGGGTGTCTTGGACGCCAAGGAAAAGCAT  400

seq1  GTGGAAAGGAGGTGATCAAACACCTGAACTGCGGAATAGTAGTACCTGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGGAGGTGATCAAACACCTGAACTGCGGAATAGTAGTACCTGCG  450

seq1  TGATAATCTGAATGACATAATTGGTGTGAATTCCTAATCACAATGTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCTGAATGACATAATTGGTGTGAATTCCTAATCACAATGTTTGG  500

seq1  TGTTAGTAAGGGCTCAAAAGCACACGTGGTATTTTAACACCTAATGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTAAGGGCTCAAAAGCACACGTGGTATTTTAACACCTAATGTCTC  550

seq1  TGAACAAAAAAAGAAACCAAGCCCTCACTATAAAGCTGCCCAGTTCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAAAAGAAACCAAGCCCTCACTATAAAGCTGCCCAGTTCCTAT  600

seq1  GATGAACTCCAGAGGGCGCTCGAAGACTTTCTTCCCTGTCAGTTTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTCCAGAGGGCGCTCGAAGACTTTCTTCCCTGTCAGTTTTAGCT  650

seq1  ATAAGGGAAAATGGATTCCCAGGGCAAACAACCCTTCGTCTGAAAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAAATGGATTCCCAGGGCAAACAACCCTTCGTCTGAAAGGCTC  700

seq1  GAAGGTCCGATGCGGTGAGTGTCAAACGTCTGTGTGGACTAGAATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCCGATGCGGTGAGTGTCAAACGTCTGTGTGGACTAGAATGTCTT  750

seq1  GATCCTGTTAAAATGCTGATCCTGGCCAGGGAGGTGGCTCAGTGAGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTTAAAATGCTGATCCTGGCCAGGGAGGTGGCTCAGTGAGTGGA  800

seq1  AGCACTGGTTTGGCAGCCCTTTTTGAGCCACAATCTTAGTACATCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTTTGGCAGCCCTTTTTGAGCCACAATCTTAGTACATCTGTGT  850

seq1  TGAGATGGGGAGGAACGTGGCTGGAACCTTAGGGCTGCTCCTGTAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGGGAGGAACGTGGCTGGAACCTTAGGGCTGCTCCTGTAGCAGG  900

seq1  CAAGAAAGATCAGACTGCGTAGTGGTGTTAGGTCTCAAAGAAGCCCAGGA  950
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CAAGAAAGATCAGACTGCGTAGTGGTGTTAGGTCTCAA--GAGCCCAGGA  948

seq1  CACGT-GTTCAGTACCTGAGGACCTTCTGGCACTTCTCACCCAGTCTGCT  999
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACGTGGTTCAGTACTTGAGGACCTTCTGGCACTTCTCACCCAGTCTGCT  998

seq1  ACACCAAACCTCTAGGGG-AGCAGGAGGGGCACACTTCTG-CTTCCCTTC  1047
      ||| |||||||||||||| ||||||||||||||||||||| |||||||| 
seq2  ACA-CAAACCTCTAGGGGAAGCAGGAGGGGCACACTTCTGCCTTCCCTTT  1047

seq1  CCCTGTCTCATCCCTATATAACTTAGCCATTTTGG-ATACTCTGGTCT-C  1095
      ||||||||||||| ||  |||| |||||| || || |||||||||||| |
seq2  CCCTGTCTCATCCGTAATTAACCTAGCCAATTGGGAATACTCTGGTCTCC  1097

seq1  TTGA--CCTGGGTGCC  1109
      ||||  ||||||||||
seq2  TTGAACCCTGGGTGCC  1113


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