BAC Information

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BAC

Clone NameB6Ng01-320M01
Chromosome19 (Build37)
Map Location 29,660,567 - 29,823,102
singlet/doubletdoublet
Overlap geneC030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Downstream geneRanbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320M01.bB6Ng01-320M01.g
ACCGA110041GA110042
length9851,106
definitionB6Ng01-320M01.b B6Ng01-320M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,660,567 - 29,661,552)(29,821,995 - 29,823,102)
sequence
gaattcagctccattctgagctaaatattagccctgtctcagaagtaact
aaacctaaaaagaataaccttttaggtagaaaataaactctaaggattga
taatgaaacatttaaaagtaaaaaatatatgagtgactgttcttaaggat
agccttattagtatattgacttatggtggttttgaggaagtagtagtctc
attaattgggtttgagtacacagatctgatacgtggtctcataattctac
attcactcttgatcactttatctttggttatttatgaagaattagcttgc
caaaatataaacattaatttttttgcaaaactgttgttcattcttctgac
tggtgtttctttaaagtgagctggggaggagtctggataaagatggacgg
cctgagagcctaagcatgcttggttaccctctgatttatatgtgcacttc
tttccttcttcagctcagaatctacctacgaacatccaacctggacaatg
cctttgctcatgtcaccaaagcaccaatggaaacattactgcttagtgtc
ttccgcgacatggtggtagtgtttcgagcagactgttcaatatgccttta
cagtattgaaagaaaatccgatgggtgagttataacagggggtgagtctc
tcttgctcctctttatcaggtttctaaacccctttttccatcttcatatt
ttgtttcattataaggagttttggtggtagtagttgaagaaaagcacaag
aacctgcttttctccctgtgttatggggaggaagactagcattttagctg
agctaagccttagatactttttcccacaactcacacgttgggggctaata
aacttttcaggtcctgtggggaaggtaggagctatcctcaggaagctccc
tgtcatccctgctacagtggaaattgtactgcagcccagaaactttatag
tgttgactggtcaactgcagcatggtagccacgag
gaattctctgtcttatcagtttattttttataactttgcagtgctgggaa
tgaaatccaggtctttatgcatataccaggcatgtgttcaaccataaagc
tactccatcctcaaacccatgccatttttcagtccctcctattttttcct
cagcagaattaatattcatgtaacactattagccttatatattatttcac
ttactcataaacattccaaaagtagatggctactgttgtttttatgttat
gtatgcaagtgttctgcctgcttttatcaccacacatcacatgagtacct
gtgctggaggaagccagaagaggtgttagatccactggaactggacttga
agaggattgggagctattatgtgggtgctgagaactcaaccctgcacctc
catgatagtagcaagtggtcttaactgctgagccatcttccagccccaag
attctatagacattctttaacattaggaacaggaaggtctatttacttgc
ccggtgttaaacagctaataaatagcaggattcagagaaaaaaaatgtga
aaagataattagggtgccattaaataggcctgaaaagaagctggtagagt
ttaaatgaagagctggaagatggctgtgaagaggaacttaaatacaaata
aacagtgccatgtaccttttctattgcactggcaggaagaatgtcctctt
aagagaggtaagtgttcatgggctggagagatggctcagcagttaagagc
actgactactcttgcagggtcttgagttcaattcctagcaaccacatggt
gactcacaaccatctgtaatgggatctgactgtgacaatgtactcagaca
ttcaaataaatcttttttttttttttaaaaaagagagcggtatacagaaa
agtagcagaacttgggcatctaatttttatttttcagtttctcctatttt
ttttccctcagaaactaacatgtaccactaagttaaagagaaaaataatt
tgattatttaagagtcatattgtgtgattagtaaagaattgccattaaat
gatcatttttaatagcaagagattattatgaaaatcaatactagatcgat
gtttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29660567_29661552
seq2: B6Ng01-320M01.b_46_1030

seq1  GAATTCAGCTCCATTCTGAGCTAAATATTAGCCCTGTCTCAGAAGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCATTCTGAGCTAAATATTAGCCCTGTCTCAGAAGTAACT  50

seq1  AAACCTAAAAAGAATAACCTTTTAGGTAGAAAATAAACTCTAAGGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAAAAGAATAACCTTTTAGGTAGAAAATAAACTCTAAGGATTGA  100

seq1  TAATGAAACATTTAAAAGTAAAAAATATATGAGTGACTGTTCTTAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACATTTAAAAGTAAAAAATATATGAGTGACTGTTCTTAAGGAT  150

seq1  AGCCTTATTAGTATATTGACTTATGGTGGTTTTGAGGAAGTAGTAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTAGTATATTGACTTATGGTGGTTTTGAGGAAGTAGTAGTCTC  200

seq1  ATTAATTGGGTTTGAGTACACAGATCTGATACGTGGTCTCATAATTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGGGTTTGAGTACACAGATCTGATACGTGGTCTCATAATTCTAC  250

seq1  ATTCACTCTTGATCACTTTATCTTTGGTTATTTATGAAGAATTAGCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCTTGATCACTTTATCTTTGGTTATTTATGAAGAATTAGCTTGC  300

seq1  CAAAATATAAACATTAATTTTTTTGCAAAACTGTTGTTCATTCTTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATAAACATTAATTTTTTTGCAAAACTGTTGTTCATTCTTCTGAC  350

seq1  TGGTGTTTCTTTAAAGTGAGCTGGGGAGGAGTCTGGATAAAGATGGACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTCTTTAAAGTGAGCTGGGGAGGAGTCTGGATAAAGATGGACGG  400

seq1  CCTGAGAGCCTAAGCATGCTTGGTTACCCTCTGATTTATATGTGCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCCTAAGCATGCTTGGTTACCCTCTGATTTATATGTGCACTTC  450

seq1  TTTCCTTCTTCAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTCAGCTCAGAATCTACCTACGAACATCCAACCTGGACAATG  500

seq1  CCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTC  550

seq1  TTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTA  600

seq1  CAGTATTGAAAGAAAATCCGATGGGTGAGTTATAACAGGGGGTGAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGAAAGAAAATCCGATGGGTGAGTTATAACAGGGGGTGAGTCTC  650

seq1  TCTTGCTCCTCTTTATCAGGTTTCTAAACCCCTTTTTCCATCTTCATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCCTCTTTATCAGGTTTCTAAACCCCTTTTTCCATCTTCATATT  700

seq1  TTGTTTCATTATAAGGAGTTTTGGTGGTAGTAGTTGAAGAAAAGCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTATAAGGAGTTTTGGTGGTAGTAGTTGAAGAAAAGCACAAG  750

seq1  AACCTGCTTTTCTCCCTGTGTTATGGGGAGGAAGACTAGCATTTTAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTTTTCTCCCTGTGTTATGGGGAGGAAGACTAGCATTTTAGCTG  800

seq1  AGCTAAGCCTTAGATACTTTTTCCCACAACTCACACGTTGGGGGCTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGCCTTAGATACTTTTTCCCACAACTCACACGTTGGGGGCTAATA  850

seq1  AACTTTCCAGGTCCTGT-GGGAAGGTAAGGAGCTATCCCCAGGAAGCTCC  899
      |||||| |||||||||| |||||||| ||||||||||| |||||||||||
seq2  AACTTTTCAGGTCCTGTGGGGAAGGT-AGGAGCTATCCTCAGGAAGCTCC  899

seq1  CT-TCATCCCTGCTACAGTGGATATTGTACTGCAGCCCAGAAACCTTATA  948
      || ||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  CTGTCATCCCTGCTACAGTGGAAATTGTACTGCAGCCCAGAAACTTTATA  949

seq1  GTGTTGACTTGGTCAACTTGCAGCATGTAGGCCACGGG  986
      |||||||| |||||||| |||||||||   |||||| |
seq2  GTGTTGAC-TGGTCAAC-TGCAGCATGGTAGCCACGAG  985

seq1: chr19_29821995_29823102
seq2: B6Ng01-320M01.g_66_1171 (reverse)

seq1  GTAAACAATTTGATCTTAGTAATTGATTTTCATATTATTCTCCTTGCTTA  50
      |||||||  | |||| |||| ||||||||||||| || ||| ||||||  
seq2  GTAAACA--TCGATC-TAGT-ATTGATTTTCATAATAATCT-CTTGCTAT  45

seq1  TAAAAATGATCATTTAATGGCAATTCTTTTACTAATCACACAATATGACT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAAAATGATCATTTAATGGCAATTC-TTTACTAATCACACAATATGACT  94

seq1  CTTAAAT-ATCCAATTATTTTTCTCTTTAACTTAGTGGTACATGTTAG-T  148
      ||||||| ||| |||||||||||||||||||||||||||||||||||| |
seq2  CTTAAATAATCAAATTATTTTTCTCTTTAACTTAGTGGTACATGTTAGTT  144

seq1  TCTGAGG--AAAAAAATAGAAGAAACTGAAAAATAAAAATTAGATG-CCA  195
      |||||||  |||||||||| |||||||||||||||||||||||||| |||
seq2  TCTGAGGGAAAAAAAATAGGAGAAACTGAAAAATAAAAATTAGATGCCCA  194

seq1  AGTTCTGCTAC-TTTCTGTATACCGCTCTCTTTTTTAAAAAAAAAAAAAA  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCTACTTTTCTGTATACCGCTCTCTTTTTTAAAAAAAAAAAAAA  244

seq1  GATTTATTTTGAATGTCTGAGTACATTGTCACAGTCAGATCCCATTACAG  294
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTA-TTTGAATGTCTGAGTACATTGTCACAGTCAGATCCCATTACAG  293

seq1  ATGGTTGTGAGTCACCATGTGGTTGCTAGGAATTGAACTCAAGACCCCTG  344
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGGTTGTGAGTCACCATGTGGTTGCTAGGAATTGAACTCAAGA-CCCTG  342

seq1  CAAGAGTAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCATGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCATGAA  392

seq1  CACTTACCTCTCTTAAGAGGACATTCTTCCTGCCAGTGCAATAGAAAAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCTCTCTTAAGAGGACATTCTTCCTGCCAGTGCAATAGAAAAGG  442

seq1  TACATGGCACTGTTTATTTGTATTTAAGTTCCTCTTCACAGCCATCTTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCACTGTTTATTTGTATTTAAGTTCCTCTTCACAGCCATCTTCC  492

seq1  AGCTCTTCATTTAAACTCTACCAGCTTCTTTTCAGGCCTATTTAATGGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTCATTTAAACTCTACCAGCTTCTTTTCAGGCCTATTTAATGGCA  542

seq1  CCCTAATTATCTTTTCACATTTTTTTTCTCTGAATCCTGCTATTTATTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTATCTTTTCACATTTTTTTTCTCTGAATCCTGCTATTTATTAG  592

seq1  CTGTTTAACACCGGGCAAGTAAATAGACCTTCCTGTTCCTAATGTTAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAACACCGGGCAAGTAAATAGACCTTCCTGTTCCTAATGTTAAAG  642

seq1  AATGTCTATAGAATCTTGGGGCTGGAAGATGGCTCAGCAGTTAAGACCAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTATAGAATCTTGGGGCTGGAAGATGGCTCAGCAGTTAAGACCAC  692

seq1  TTGCTACTATCATGGAGGTGCAGGGTTGAGTTCTCAGCACCCACATAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTATCATGGAGGTGCAGGGTTGAGTTCTCAGCACCCACATAATA  742

seq1  GCTCCCAATCCTCTTCAAGTCCAGTTCCAGTGGATCTAACACCTCTTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATCCTCTTCAAGTCCAGTTCCAGTGGATCTAACACCTCTTCTG  792

seq1  GCTTCCTCCAGCACAGGTACTCATGTGATGTGTGGTGATAAAAGCAGGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCAGCACAGGTACTCATGTGATGTGTGGTGATAAAAGCAGGCA  842

seq1  GAACACTTGCATACATAACATAAAAACAACAGTAGCCATCTACTTTTGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGCATACATAACATAAAAACAACAGTAGCCATCTACTTTTGGA  892

seq1  ATGTTTATGAGTAAGTGAAATAATATATAAGGCTAATAGTGTTACATGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGAGTAAGTGAAATAATATATAAGGCTAATAGTGTTACATGAA  942

seq1  TATTAATTCTGCTGAGGAAAAAATAGGAGGGACTGAAAAATGGCATGGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTCTGCTGAGGAAAAAATAGGAGGGACTGAAAAATGGCATGGGT  992

seq1  TTGAGGATGGAGTAGCTTTATGGTTGAACACATGCCTGGTATATGCATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATGGAGTAGCTTTATGGTTGAACACATGCCTGGTATATGCATAA  1042

seq1  AGACCTGGATTTCATTCCCAGCACTGCAAAGTTATAAAAAATAAACTGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGATTTCATTCCCAGCACTGCAAAGTTATAAAAAATAAACTGAT  1092

seq1  AAGACAGAGAATTC  1108
      ||||||||||||||
seq2  AAGACAGAGAATTC  1106